Skip to main contentSkip to breadcrumbsSkip to sub navSkip to doormat

Publications

IMP scientists publish 60 to 90 scientific papers in international peer-review journals every year. This evidence for the productivity and high scientific standard of the IMP is listed here in full – a directory of all scientific publications by IMP scientists since the establishment of the institute, organised by years and research groups.

Chen, S., Loubiere, V., Hollingsworth, EW., Murakami, K., Mandlburger, N., Jacinto, SH., Dizehchi, A., Schreiber, J., Kvon, EZ., Stark, A. (2026)

Predictive design of tissue-specific mammalian enhancers that function in the mouse embryo.

Nat Genet. 58(9):2129-2133
Mosca, E., Stein, E., John, J., Kinzer, M., Novatchkova, M., Scheuch, H., Agu, C., Stary, G., Penninger, JM., Meixner, A., Volz-Glaser, J. (2026)

Generation of high-quality reference control panels of human induced pluripotent stem cell clones from fibroblasts.

Stem Cell Res. 96:104096
Stein, E., Mosca, E., John, J., Kinzer, M., Novatchkova, M., Scheuch, H., Agu, C., Stary, G., Penninger, JM., Meixner, A., Volz-Glaser, J. (2026)

Generation of high-quality reference control panels of human induced pluripotent stem cell clones from PBMCs.

Stem Cell Res. 96:104097
Jonsson, G., Oliveira, T., Hofmann, M., Lemberger, U., Stejskal, K., Krššáková, G., Sakic, I., Novatchkova, M., Mereiter, S., Grabmann, G., Köcher, T., Koglgruber, R., Kikic, Z., Camano Páez, S., Luna Sanchez, B., Díez Nicolás, V., Rechberger, GN., Züllig, T., Hagelkruys, A., Englinger, B., Schmidinger, M., Penninger, JM. (2026)

Urinary multi-omics reveal non-invasive diagnostic biomarkers in clear cell renal cell carcinoma.

EMBO Mol Med.
Navalayeu, T., Beer, N., Bebjaková, M., Kalis, RW., Hohmann, U., Stejskal, K., Krššáková, G., Fasching, N., Herzog, VA., Popitsch, N., Roitinger, E., Plaschka, C., Zuber, J., Ameres, SL. (2026)

Cellular assembly and functional resilience of the mammalian RNA exosome.

EMBO J. 45(15):5423-5456
Márquez-Oller, D., Pauli, A., Fallmann, J. (2026)

BRIDGE: an interactive application for multi-omics data analysis, visualization and integration.

Bioinformatics. 42(7)
Chugunova, A., Schütz, I., Keresztes, H., Kobylinska, R., Novatchkova, M., Lendl, T., Strobl, M., Fallmann, J., Oller, DM., Schutzbier, M., Dürnberger, G., Imre, R., Roitinger, E., Kidd, P., Pasierbek, P., Cencerrado, AM., Brandstetter, M., Köcher, T., Agerer, B., Genger, JW., Bergthaler, A., Pauli, A. (2026)

ER-mitochondria contacts and mitochondrial fusion correlate with increased mitochondrial activity during vertebrate embryogenesis.

Show Preprint Cell Rep. 45(7):117615
Bugai, A., Hohmann, U., Lorenzo, A., Graf, M., Fin, L., Rouvière, JO., Tirian, L., Dou, Y., Le Rest, M., Polák, P., Johnsen, D., Jakobsen, L., Andersen, JS., Brennecke, J., Plaschka, C., Jensen, TH. (2026)

Molecular basis of polyadenylated RNA fate determination in the nucleus.

Nature. 655(8124):1070-1078
Mereiter, S., Jonsson, G., Oliveira, T., Garberis, IJ., Helm, J., Abeln, M., Jochum, AK., Jochum, W., Kellner, MJ., Feith, M., Tkalec, V., Wasilewska, K., Jiao, J., Hoffmann, D., Emsenhuber, L., Holstein, F., Obenauf, AC., Kroemer, G., Lacroix-Triki, M., Ali, OH., Flatz, L., Gerardy-Schahn, R., Münster-Kühnel, A., Stadlmann, J., Zitvogel, L., Penninger, JM. (2026)

Tumor sialylation regulates G-CSF stability and promotes neutrophil-mediated immunosuppression in breast cancer.

Nat Commun. 17(1)
Du, Q., Wang, M., Tiang, CL., Sheehan, MJ., Altendorf, P., Yu, JK., Hudecz, O., Roitinger, E., Wang, CR., Bukowski, R., Meeley, RB., Ko, C., Golubovskaya, IN., Pawlowski, WP. (2026)

PAM1 regulates meiosis by coupling RNA processing to the chromosome axis.

Proc Natl Acad Sci U S A. 123(20):e2535316123
Peychl, J., Rossi, C., Aulner, N., Salles, A., Halidi, N., Brunstein, M., Mallet, A., Aumayr, K., Verbavatz, JM., Heuser, T., Santarella-Mellwig, R., Dauphin, A., Parthoens, E., Gunkel, M., Fritsch, M., Bundschuh, ST., Chaabouni, R., Uhereczky, A., Tranfield, EM., Varas, PH., Munck, S. (2026)

Stress and conflict management in core facilities-News from an imaging survey.

J Microsc. 302(3):370-381
Hlavata, A., Neuditschko, B., Schellhaas, U., Plaschka, C., Herzog, F., Bernecky, C. (2026)

Structure of cytoplasmic RNA polymerase II.

Nat Commun.
Pre-print Deneke, VE., Suwita, JP., Wang, H., Tonai, S., Lu, Y., Panser, K., Schleiffer, A., Hollis, JA., Novatchkova, M., Dürnberger, G., Stejskal, K., Krssakova, G., Blaha, A., Andresan, AAR., Mirus, M., Marvanova, H., Chang, HY., Noda, T., Burga, A., Roitinger, E., Ikawa, M., Pauli, A. (2026)

The SPARK complex forms the molecular basis of vertebrate fertilization

bioRxiv. 10.64898/2026.05.13.724128
Robertson, KC., Amann, SJ., Liu, T., Funk, AV., Wang, X., Grishkovskaya, I., Mehmood, A., Tabor, JR., Norris-Drouin, JL., Arrowsmith, CH., Collins, JL., Miao, Y., Emanuele, MJ., Haselbach, D., James, LI., Brown, NG. (2026)

Structural basis of NSD2 degradation via targeted recruitment of SCF-FBXO22.

Nat Commun.
Wutz, G., Davidson, IF., Banigan, EJ., Stocsits, RR., Kawasumi, R., Tang, W., Nagasaka, K., Costantino, L., Jansen, R., Hirota, K., Branzei, D., Mirny, LA., Peters, JM. (2026)

PDS5 proteins control genome architecture by limiting the lifetime of cohesin-NIPBL complexes.

Mol Cell.
Heizler, K., Chugunova, A., Hofmann, M., Prochazkova, M., Procházka, J., Ho-Xuan, H., Fallmann, J., Stejskal, K., Krssakova, G., Bader, S., Kocak, E., Yasar, D., Luckner, P., Lehmann, G., Köngeter, J., Riester, M., Roitinger, E., Wetzel, C., Diederichs, S., Sedlacek, R., Bruckmann, A., Gebhardt, JCM., Pauli, A., Meister, G. (2026)

The microprotein SMIM26 connects metabolite transporters of the outer and inner mitochondrial membranes and is essential for respiratory chain function.

Genes Dev.
Hoch, DG., Belford, M., Heil, LR., Mechtler, K., Matzinger, M. (2026)

Low-resolution FAIMS for increased peptide coverage in low-load and single-cell proteomics.

Sci Rep.
Xiang, X., Gao, A., Handler, D., Falcon, F., Rodriguez-Terrones, D., Nowoshilow, S., Liu, W., Tanaka, EM., O'Carroll, D. (2026)

A mammalian-like piRNA pathway in Axolotl reveals the origins of piRNA-directed DNA methylation.

EMBO J. 45(6):1933-1956
Junker, S., Clausen, T. (2026)

BacPROTAC-induced protein degradation as a new antibiotic concept.

Trends Biochem Sci. 51(3):249-260
Chiesa, A., Poli, V., Croci, O., Biagioni, F., Fuentes, P., Marenda, M., Dondi, A., Rodighiero, S., Filipuzzi, M., Sberna, S., Marzi, M., Nicassio, F., Zuber, J., Campaner, S. (2026)

Functional genomic screens uncover FERMT2 as a critical regulator of YAP/TAZ-driven tumorigenicity.

Cell Death Differ.
Ge, J., Hirosue, S., Castillon, L., Patel, SA., Wesolowski, L., Dyas, A., Yong, C., de Haan, S., Drost, J., Stewart, GD., Obenauf, AC., Muñoz-Espín, D., Vanharanta, S. (2026)

Mechanisms of resistance to VHL loss-induced genetic and pharmacological vulnerabilities.

EMBO Mol Med. 18(2):599-619
Remick, BC., Mao, JQ., Manford, AG., Gutierrez-Jensen, AD., Wagner, A., Rape, M., McFadden, G., Rahman, MM., Gaidt, MM., Vance, RE. (2026)

Poxvirus attack of antiviral defense pathways unleashes an effector-triggered NF-κB response.

Science. 391(6786):eadw4937
Centonze, A., Roura, AJ., Novillo-Font, M., Giordano, C., Hernando-Momblona, X., Llanses, M., Prats, P., Sevillano, M., Cabot, D., Novell, M., Pabst, G., Andersch, F., Cañellas-Socias, A., Zhang, C., Giakoumakis, NN., Sparks, H., Dunsby, C., Colombelli, J., Fernández-Barral, A., Sancho, E., Stephan-Otto Attolini, C., Muñoz, A., Barbachano, A., Palmer, HG., Martínez-Quintanilla, J., Zuber, J., Blaj, C., Quintana, E., Cortina, C., Marti-Renom, MA., Batlle, E. (2026)

A Plastic EMP1+ to LGR5+ Cell State Conversion as a Bypass to KRASG12D Pharmacologic Inhibition in Metastatic Colorectal Cancer.

Cancer Discov. 16(2):320-344
Pre-print Briedis-Gert, KR., Schulze, G., Novatchkova, M., Panser, K., Cabrera Quio, LE., Koller, A., Guo, Y., Cairns, BR., Valen, E., Pauli, A (2026)

Reciprocal zebrafish-medaka hybrids reveal maternal control of zygotic genome activation timing

bioRxiv. 10.1101/2021.11.03.467109
Brunner, HL., Kalis, RW., Grundmann, L., Hodáková, Z., Koskova, Z., Grishkovskaya, I., de Almeida, M., Hinterndorfer, M., Knaudt, H., Höfflin, S., Andersch, F., Kotisch, H., Dickmanns, A., Cuylen-Haering, S., Zuber, J., Haselbach, D. (2026)

A multivalent adaptor mechanism drives the nuclear import of proteasomes.

Nat Commun.
Groslambert, J., Buch-Larsen, SC., Hendriks, IA., Kurzbauer, R., Elsborg, JD., Chatrin, C., Agnew, T., Henfrey, C., Tellier, M., Prokhorova, E., Hoang, SM., Barosso-Gonzalez, J., O'Sullivan, RJ., Clausen, T., Nielsen, ML., Ahel, I. (2026)

PARG regulates the proteasomal degradation of TARG1.

Cell Rep. 45(1):116789
Calderón, L., Schäfer, M., Rončević, M., Rauschmeier, R., Jaritz, M., Schwickert, TA., Sun, Q., Pauli, A., Zuber, J., Busslinger, M. (2026)

In vivo CRISPR/Cas9 screens identify new regulators of B cell activation and plasma cell differentiation.

J Exp Med. 223(3)
Zhang, Y., Grundmann, L., Vollmar, L., Schimpf, J., Hübscher, V., Areeb, M., Grishkovskaya, I., Moddemann, A., Werner, K., Hugel, T., Haselbach, D., Rospert, S. (2026)

The cotranslational cycle of the ribosome-bound Hsp70 homolog Ssb.

Nat Commun. 17(1):961
Gerhalter, M., Prattes, M., Grundmann, LE., Grishkovskaya, I., Semeraro, EF., Zisser, G., Kotisch, H., Merl-Pham, J., Hauck, SM., Haselbach, D., Bergler, H. (2026)

A comprehensive view on r-protein binding and rRNA domain structuring during early eukaryotic ribosome formation.

Nucleic Acids Res. 54(3)
de Araujo, MEG., J Amann, S., Stasyk, T., Schleiffer, A., Rauch, E., Flümann, P., Singer, II., Kremser, L., Dostal, V., Laopanupong, T., Obojes, N., Wallnöfer, MH., Gradl, FS., Kurzbauer, R., Krebiehl, C., Kofler, S., Grishkovskaya, I., Vogel, GF., Hess, MW., Sarg, B., Clausen, T., Haselbach, D., Huber, LA. (2026)

BORC assemblies integrate BLOC-1 subunits to diversify endosomal trafficking functions.

Proc Natl Acad Sci U S A. 123(4):e2515691123
Schwartz, I., Budroni, V., Meyenberg, M., Hodakova, Z., Hornegger, H., Hacker, K., Schwartz, S., Grabarczyk, DB., Ehrmann, JF., Scinicariello, S., Haselbach, D., Menche, J., Clausen, T., Karagöz, GE., Versteeg, GA. (2026)

Guardian ubiquitin E3 ligases target cancer-associated APOBEC3 deaminases for degradation to promote human genome integrity.

Nat Commun.
Kordic, D., Williams, TL., Deszcz, L., Ehrmann, JF., Arnese, R., Schleiffer, A., Clausen, T., Meinhart, A. (2025)

Structural basis for substrate recruitment and catalytic ubiquitin transfer by the E2/E3 hybrid enzyme UBE2O.

J Biol Chem. 302(2):111073
Chen, S., Loubiere, V., Hollingsworth, EW., Jacinto, SH., Dizehchi, A., Schreiber, J., Kvon, EZ., Stark, A. (2025)

Predictive design of tissue-specific mammalian enhancers that function in vivo in the mouse embryo.

bioRxiv.
Queralt, C., Moreta-Moraleda, C., Costa, M., Grau-Leal, F., Diesch, J., Vendrell-Ayats, C., Musulén, E., Wright, RHG., Bugés, C., Manzano, JL., Cabrero-de Las Heras, S., Zuber, J., Buschbeck, M., Forcales, SV., Martínez-Balibrea, E. (2025)

Loss-of-function genetic screen unveils synergistic efficacy of PARG inhibition with combined 5-fluorouracil and irinotecan treatment in colorectal cancer.

Clin Transl Med. 15(12):e70543
Pachano, T., Leng, H., Dugied, G., Tribble, T., Loubiere, V., Rauh, F., Lee, Y., Schleiffer, A., Young, V., Weller, B., Lyons, EA., Hass, MR., Kottayan, LC., Weirauch, MT., Fuxman Bass, JI., Newton, HJ., Ensminger, AW., Braun, PF., Schramek, D., Stark, A., Taipale, M. (2025)

Systematic Discovery of Pathogen Effector Functions across Human Pathogens and Pathways.

bioRxiv.
Pastoors, D., Havermans, M., Mulet-Lazaro, R., Smeenk, L., Ottema, S., Erpelinck-Verschueren, C., van Herk, S., Anthonissen, M., Grob, T., Subramanian, S., Thoms, JAI., Pimanda, JE., Wouters, BJ., Beverloo, B., Haferlach, T., Haferlach, C., Zuber, J., Bindels, E., Delwel, R. (2025)

MECOM is a master repressor of myeloid differentiation through dose control of CEBPA in acute myeloid leukemia.

Blood. 146(25):3098-3105
Sadiku, P., Brenes, AJ., Mayer, RL., Reyes, L., Coelho, P., van Stralen, G., Zhang, A., Sanchez-Garcia, MA., Watts, ER., Liaquat, I., Howden, AJM., Adekoya, I., Boldbaatar, A., MacRaild, A., Risbridger, S., Morrison, GM., MacPherson, H., Bruce, CM., Johnston, S., Grecian, R., Murphy, FA., Pollard, SM., Brennan, PM., Mechtler, K., Walmsley, SR. (2025)

Single cell proteomic analysis defines discrete neutrophil functional states in human glioblastoma.

Nat Commun.
Barth, R., Janissen, R., Muras, L., van der Torre, J., Litos, G., van der Sluis, E., van den Berg, A., Davidson, IF., Peters, JM., Dekker, C. (2025)

Two CTCF motifs impede cohesin-mediated DNA loop extrusion.

Mol Cell. 85(23):4304-4317.e9
Sánchez de Medina Hernández, V., Nava-García, MM., Bianchi, A., Clavel, M., Papareddy, RK., Benchalel, L., Andreev, VI., Mathur, V., Mohseni, A., García-León, M., Gao, P., de la Concepción, JC., Picchianti, L., Grujic, N., Kobylinska, R., Abdrakhmanov, A., Duvergé, H., Anand, G., Leibrock, N., Ma, J., Raffeiner, M., Crawford, TS., Argirò, L., Matuszkiewicz, M., Wun, CL., Kanne, JV., Meinhart, A., Roitinger, E., Bäurle, I., Kang, BH., Petersen, M., Üstün, S., Kulathu, Y., Clausen, T., Ramundo, S., Dagdas, Y. (2025)

Cross-species interactome analysis uncovers a conserved selective autophagy mechanism for protein quality control in plants.

Dev Cell.
Höckendorf, U., Dutta, S., Kloos, A., Runtsch, M., Zötsch, C., Vosberg, S., Wang, Y., Kienreich, S., Flasch, B., Malovan, G., Jäger, V., Stanzer, S., Prein, S., Odinius, TO., Wagner, CV., Buschhorn, L., Dill, V., Perfler, B., Haferlach, T., Döhner, K., Götze, KS., Ruland, J., Bassermann, F., Wahida, A., Heikenwälder, M., Branca, C., Schmöllerl, J., Zuber, J., Burk, AC., Zeiser, R., Sill, H., Jayavelu, AK., Zebisch, A., Heuser, M., Dengler, MA., Jost, PJ. (2025)

Lymphotoxin alpha eradicates acute myeloid leukemia and simultaneously promotes healthy hematopoiesis in mice.

Sci Transl Med. 17(826):eadu3313
De la Concepcion, JC., Duverge, H., Kim, Y., Julian, J., Xu, HD., Watt, MN., Ikene, SA., Bianchi, A., Grujic, N., Papareddy, RK., Grishkovskaya, I., Haselbach, D., Murray, DH., Clavel, M., Irwin, NAT., Dagdas, Y. (2025)

Electrostatic changes enabled the diversification of an exocyst subunit via protein complex escape.

Nat Plants. 11(11):2350-2367
Müller, F., Birklbauer, MJ., Bubis, J., Stejskal, K., Dorfer, V., Mechtler, K. (2025)

Breaking barriers in crosslinking mass spectrometry with enhanced throughput and sensitivity using Orbitrap Astral.

Nat Commun. 16(1):9877
Hohmann, U., Graf, M., Tirián, L., Pacheco-Fiallos, B., Schellhaas, U., Fin, L., Handler, D., Phillips, AW., Riabov-Bassat, D., Faraway, R., Pühringer, T., Szalay, MF., Roitinger, E., Brennecke, J., Plaschka, C. (2025)

An ATP-gated molecular switch orchestrates human mRNA export

Nature. 649(8098):1042-1050
Groessl, S., Kalis, R., Snaebjornsson, MT., Wambach, L., Haider, J., Andersch, F., Schulze, A., Palm, W., Zuber, J. (2025)

Acidosis orchestrates adaptations of energy metabolism in tumors.

Science. 390(6769):eadp7603
Pastorio, C., Richard, K., Usmani, S., Kissmann, AK., Bolotnikov, G., Gosálbez, G., Hayn, M., Koepke, L., Sauertnik, A., Preising, A., Preising, N., Ständker, L., Fair, M., Morris, J., Papasavvas, E., Liu, Q., Sun, H., Rodríguez, A., Mounzer, K., Wiese, S., Tebas, P., Du, Y., Laird, GM., Jaritz, M., Rosenau, F., Gaidt, MM., Sparrer, KMJ., Montaner, LJ., Kirchhoff, F. (2025)

Retinol Binding Protein 4 reactivates latent HIV-1 by triggering canonical NF-κB, JAK/STAT5 and JNK signalling.

Signal Transduct Target Ther. 10(1):326
Faraway, R., Costello Heaven, N., Digby, H., Kuret Hodnik, K., Rebselj, J., Wilkins, OG., Chakrabarti, AM., Iosub, IA., Vadnjal, N., Dore, R., Knez, L., Ameres, SL., Plaschka, C., Ule, J. (2025)

Collective homeostasis of condensation-prone proteins via their mRNAs.

Nature.
Faraway, R., Zenklusen, D., Plaschka, C. (2025)

Mechanisms of Messenger RNA Packaging and Export.

Annu Rev Cell Dev Biol. 41(1):479-504
Avdeeva, M., Walker, S., van der Veeken, J., Rudensky, A., Pritykin, Y. (2025)

ArchVelo: Archetypal Velocity Modeling for Single-cell Multi-omic Trajectories.

bioRxiv.
Robertson, KC., Amann, SJ., Liu, T., Funk, AV., Wang, X., Grishkovskaya, I., Tabor, JR., Norris-Drouin, JL., Arrowsmith, CH., Collins, JL., Emanuele, MJ., Haselbach, D., James, LI., Brown, NG. (2025)

Structural basis of NSD2 degradation via targeted recruitment of SCF-FBXO22.

bioRxiv.
Estivill, G., Obenauf, AC. (2025)

Trio fatale: Neutrophils, NETs, and necrosis.

Immunity. 58(9):2154-2156
Portell-Montserrat, J., Tirian, L., Yu, C., Silvestri, G., Hohmann, U., Handler, D., Duchek, P., Fin, L., Plaschka, C., Brennecke, J. (2025)

Target RNA recognition drives PIWI∗ complex assembly for transposon silencing.

Mol Cell. 85(17):3288-3305.e6
Wutz, G., Davidson, I.F., Banigan, E.J., Kawasumi, R., Stocsits, R.R., Tang, W., Nagasaka, K., Costantino, L., Jansen, R., Hirota, K., Branzei, D., Mirny, D. and Peters, J.-M. (2025)

PDS5 proteins control genome architecture by limiting the lifetime of cohesin-NIPBL complexes

bioRxiv. 673243
Grabarczyk, DB., Ehrmann, JF., Murphy, P., Yang, WS., Kurzbauer, R., Bell, LE., Deszcz, L., Neuhold, J., Schleiffer, A., Shulkina, A., Lee, J., Shin, JS., Meinhart, A., Versteeg, GA., Zavodszky, E., Song, HK., Hegde, RS., Clausen, T. (2025)

Architecture of the UBR4 complex, a giant E4 ligase central to eukaryotic protein quality control.

Science. 389(6763):909-914
Grabarczyk, DB., Aird, EJ., Reznikow, V., Kirchgatterer, PC., Ehrmann, JF., Kurzbauer, R., Bell, LE., Kellner, MJ., Aggarwal, R., Schleiffer, A., Faas, V., Deszcz, L., Meinhart, A., Versteeg, GA., Penninger, JM., Stelzl, LS., Gaidt, MM., Tessmer, I., Corn, JE., Clausen, T. (2025)

A split-site E3 ligase mechanism enables ZNFX1 to ubiquitinate and cluster single-stranded RNA into ubiquitin-coated nucleoprotein particles.

Cell.
Naas, J., Balmaña, M., Holcik, L., Novatchkova, M., Dobnikar, L., Krausgruber, T., Ladstätter, S., Bock, C., von Haeseler, A., Esk, C., Knoblich, JA. (2025)

Quantitative profiling of human brain organoid cell diversity across four protocols and multiple cell lines.

Cell Rep. 44(9):116168
Nagano, M., Hu, B., Ogata, K., Umemura, F., Ishikura, Y., Suzuki, S., Katsifis, CC., Yoshinaga, M., Litos, G., Nagasaka, K., Tang, W., Nosaka, Y., Sasada, H., Wang, H., Kondo, D., Katou, Y., Mizuta, K., Yabuta, Y., Ohta, H., de Luna Vitorino, FN., Arima, H., Ichikawa, T., Gabriele, M., Majewski, J., Garcia, BA., Takeuchi, O., Yoshida, S., Hansen, AS., Peters, JM., Ishihama, Y., Saitou, M. (2025)

The mitotic STAG3-cohesin complex shapes male germline nucleome.

Nat Struct Mol Biol.
Jonsson, G., Hofmann, M., Mereiter, S., Hartley-Tassell, L., Onji, M., Sakic, I., Oliveira, T., Hoffmann, D., Novatchkova, M., Schleiffer, A., Penninger, JM. (2025)

CLEC18A interacts with sulfated glycosaminoglycans and controls clear cell renal cell carcinoma progression.

FEBS J.
Tsai, TY., Pinheiro, D. (2025)

Coping with uncertainty: Challenges for robust pattern formation in dynamical tissues.

Semin Cell Dev Biol. 173:103629
Bräuer, P., Tirian, L., Müller, F., Mechtler, K., Matzinger, M. (2025)

In vivo crosslinking and effective 2D enrichment for proteome wide interactome studies.

Commun Chem. 8(1):245
Valeri, E., Gaidt, MM. (2025)

DIY innate immune sensing: Crafting fresh DNA to detect viruses.

Mol Cell. 85(15):2818-2820
van Wee, R., Asor, R., Li, Y., Drechsel, D., Popova, M., Litos, G., Davidson, IF., Peters, JM., Kukura, P. (2025)

NIPBL and STAG1 enable loop extrusion by providing differential DNA-cohesin affinity.

Proc Natl Acad Sci U S A. 122(32):e2514190122
Witt, KC., Dziulko, A., An, J., Pekovic, F., Cheng, AX., Liu, GY., Lee, OV., Turner, DJ., Lari, A., Gaidt, MM., Chavez, R., Fattinger, SA., Abraham, P., Dhaliwal, H., Lee, AY., Kotov, DI., Coscoy, L., Glaunsinger, BA., Valkov, E., Chuong, EB., Vance, RE. (2025)

SP140-RESIST pathway regulates interferon mRNA stability and antiviral immunity.

Show Preprint Nature. 643(8074):1372-1380
Beckwith, KS., Ødegård-Fougner, Ø., Morero, NR., Barton, C., Schueder, F., Tang, W., Alexander, S., Peters, JM., Jungmann, R., Birney, E., Ellenberg, J. (2025)

Nanoscale 3D DNA tracing in non-denatured cells resolves the Cohesin-dependent loop architecture of the genome in situ.

Nat Commun. 16(1):6673
Matl, M., Kellner, MJ., Ansah, F., Grishkovskaya, I., Handler, D., Heinen, R., Bauer, B., Menéndez-Arias, L., Auer, TO., Prieto-Godino, LL., Penninger, JM., Awandare, GA., Brennecke, J., Pauli, A. (2025)

A lyophilized open-source RT-LAMP assay for molecular diagnostics in resource-limited settings.

Life Sci Alliance. 8(10)
Nemčko, F., Stark, A. (2025)

A tighter grip on gene expression.

Science. 389(6755):31-32
Militello, G., Greig, A., Bi, C., Vasileva, A., Zavodszky, MI., Lo, SC., Guilmette, E., Clarner, P., Liu, B., Bhat, G., Suh, J., Dow, L., Zuber, J., Fellmann, C., Premsrirut, PK. (2025)

Engineered microRNA scaffolds for potent gene silencing in vivo.

Sci Rep. 15(1):21419
Soderholm, A., Vunjak, M., de Almeida, M., Popitsch, N., Podvalnaya, N., Araguas-Rodriguez, P., Scinicariello, S., Nischwitz, E., Butter, F., Ketting, RF., Ameres, SL., Müller-McNicoll, M., Zuber, J., Versteeg, GA. (2025)

ERH regulates type II interferon immune signaling through post-transcriptional regulation of JAK2 mRNA.

Nucleic Acids Res. 53(12)
Schoeberl, UE., Fitz, J., von der Linde, M., Valieris, R., Bauer, B., Malzl, D., Froussios, K., Costea, J., Schmidt, F., Pflaum, J., Bartl, B., Albrecht, J., Wiedemann, EM., Garcia, AC., Peycheva, M., Rizzi, M., Goloborodko, A., Tojal da Silva, I., Pavri, R. (2025)

Regulation of somatic hypermutation by higher-order chromatin structure.

Mol Cell.
Rappsilber, J., Bruce, J., Combe, C., Fried, S., Graziadei, A., Heck, AJR., Iacobucci, C., Leitner, A., Mechtler, K., Novak, P., O'Reilly, F., Schriemer, DC., Sinz, A., Stengel, F., Thalassinos, K. (2025)

A Roadmap for Improving Reliability and Data Sharing in Crosslinking Mass Spectrometry.

Mol Cell Proteomics. :101024
Davidson, IF., Barth, R., Nagasaka, K., Tang, W., Wutz, G., Horn, S., Janissen, R., Stocsits, RR., Chlosta, E., Bauer, BW., Dekker, C., Peters, JM. (2025)

Cohesin supercoils DNA during loop extrusion.

Cell Rep. 44(6):115856
Müller, F., Brutiu, BR., Saridakis, I., Leischner, T., Birklbauer, MJ., Matzinger, M., Madalinski, M., Lendl, T., Shaaban, S., Dorfer, V., Maulide, N., Mechtler, K. (2025)

Developing a new cleavable crosslinker reagent for in-cell crosslinking.

Commun Chem. 8(1):191
Otsuki, L., Plattner, SA., Taniguchi-Sugiura, Y., Falcon, F., Tanaka, EM. (2025)

Molecular basis of positional memory in limb regeneration.

Nature. 642(8068):730-738
Jäger, C., Dimitrova, P., Sun, Q., Tennebroek, J., Marchiori, E., Jaritz, M., Rauschmeier, R., Estivill, G., Obenauf, A., Busslinger, M., van der Veeken, J. (2025)

Inducible protein degradation reveals inflammation-dependent function of the Treg cell lineage-defining transcription factor Foxp3.

Sci Immunol. 10(108):eadr7057
Ventura, G., Pinheiro, D. (2025)

Gastrulation: Lessons from the quail embryo.

Curr Biol. 35(10):R384-R386
Troester, S., Eder, T., Wukowits, N., Piontek, M., Fernández-Pernas, P., Schmoellerl, J., Haladik, B., Manhart, G., Allram, M., Maurer-Granofszky, M., Scheidegger, N., Nebral, K., Superti-Furga, G., Meisel, R., Bornhauser, B., Valent, P., Dworzak, MN., Zuber, J., Boztug, K., Grebien, F. (2025)

Transcriptional and epigenetic rewiring by the NUP98::KDM5A fusion oncoprotein directly activates CDK12.

Nat Commun. 16(1):4656
Farhat, A., Radhouani, M., Deckert, F., Zahalka, S., Pimenov, L., Fokina, A., Hakobyan, A., Oberndorfer, F., Brösamlen, J., Hladik, A., Lakovits, K., Meng, F., Quattrone, F., Boon, L., Vesely, C., Starkl, P., Boucheron, N., Menche, J., van der Veeken, J., Ellmeier, W., Gorki, AD., Campbell, C., Gawish, R., Knapp, S. (2025)

An aging bone marrow exacerbates lung fibrosis by fueling profibrotic macrophage persistence.

Sci Immunol. 10(105):eadk5041
Husremović, T., Meier, V., Piëch, L., Siess, KM., Antonioli, S., Grishkovskaya, I., Kircheva, N., Angelova, SE., Wenzl, K., Brandstätter, A., Veis, J., Miočić-Stošić, F., Anrather, D., Hartl, M., Truebestein, L., Cerron-Alvan, LM., Leeb, M., Žagrović, B., Hann, S., Bock, C., Ogris, E., Dudev, T., Irwin, NAT., Haselbach, D., Leonard, TA. (2025)

PHLPP2 is a pseudophosphatase that lost activity in the metazoan ancestor.

Proc Natl Acad Sci U S A. 122(14):e2417218122
Umkehrer, C., Obenauf, A. (2025)

Functional Lineage Tracing Using CaTCH.

Methods Mol Biol. 2905:95-120
Ahel, J., Balci, A., Faas, V., Grabarczyk, DB., Harmo, R., Squair, DR., Zhang, J., Roitinger, E., Lamoliatte, F., Mathur, S., Deszcz, L., Bell, LE., Lehner, A., Williams, TL., Sowar, H., Meinhart, A., Wood, NT., Clausen, T., Virdee, S., Fletcher, AJ. (2025)

ATP functions as a pathogen-associated molecular pattern to activate the E3 ubiquitin ligase RNF213.

Nat Commun. 16(1):4414
Hermann, J., Borteçen, T., Kalis, R., Kowar, A., Pechincha, C., Vogt, V., Schneider, M., Helm, D., Krijgsveld, J., Loayza-Puch, F., Zuber, J., Palm, W. (2025)

mTORC1 cooperates with tRNA wobble modification to sustain the protein synthesis machinery.

Nat Commun. 16(1):4201
Blaha, A., Schleiffer, A., Pauli, A. (2025)

Conservation and divergence of the molecular regulators of the vertebrate fertilization synapse.

Curr Opin Genet Dev. 93:102352
Harar, P., Herrmann, L., Grohs, P., Haselbach, D. (2025)

FakET: Simulating cryo-electron tomograms with neural style transfer.

Structure. 33(4):820-827.e4
Elewaut, A., Estivill, G., Bayerl, F., Castillon, L., Novatchkova, M., Pottendorfer, E., Hoffmann-Haas, L., Schönlein, M., Nguyen, TV., Lauss, M., Andreatta, F., Vulin, M., Krecioch, I., Bayerl, J., Pedde, AM., Fabre, N., Holstein, F., Cronin, SM., Rieser, S., Laniti, DD., Barras, D., Coukos, G., Quek, C., Bai, X., Muñoz I Ordoño, M., Wiesner, T., Zuber, J., Jönsson, G., Böttcher, JP., Vanharanta, S., Obenauf, AC. (2025)

Cancer cells impair monocyte-mediated T cell stimulation to evade immunity.

Nature. 637(8046):716-725
Shulkina, A., Hacker, K., Ehrmann, JF., Budroni, V., Mandlbauer, A., Bock, J., Grabarczyk, DB., Edobor, G., Cochella, L., Clausen, T., Versteeg, GA. (2025)

TRIM52 maintains cellular fitness and is under tight proteolytic control by multiple giant E3 ligases.

Nat Commun. 16(1):3894
Fedl, AS., Tagoh, H., Gruenbacher, S., Sun, Q., Schenk, RL., Froussios, K., Jaritz, M., Busslinger, M., Schwickert, TA. (2025)

Author Correction: Transcriptional function of E2A, Ebf1, Pax5, Ikaros and Aiolos analyzed by in vivo acute protein degradation in early B cell development.

Nat Immunol. 26(5):805
Voichek, M., Bernhard, A., Novatchkova, M., Handler, D., Möseneder, P., Rafanel, B., Duchek, P., Senti, KA., Brennecke, J. (2025)

Direct cell-to-cell transmission of retrotransposons.

bioRxiv.
Miyara, S., Adler, M., Umansky, KB., Häußler, D., Bassat, E., Divinsky, Y., Elkahal, J., Kain, D., Lendengolts, D., Ramirez Flores, RO., Bueno-Levy, H., Golani, O., Shalit, T., Gershovits, M., Weizman, E., Genzelinakh, A., Kimchi, DM., Shakked, A., Zhang, L., Wang, J., Baehr, A., Petrover, Z., Sarig, R., Dorn, T., Moretti, A., Saez-Rodriguez, J., Kupatt, C., Tanaka, EM., Medzhitov, R., Krüger, A., Mayo, A., Alon, U., Tzahor, E. (2025)

Cold and hot fibrosis define clinically distinct cardiac pathologies.

Cell Syst. 16(3):101198
Lust, K., Tanaka, EM. (2025)

Adeno-associated viruses for efficient gene expression in the axolotl nervous system.

Proc Natl Acad Sci U S A. 122(10):e2421373122
Carrillo Roas, S., Yagita, Y., Murphy, P., Kurzbauer, R., Clausen, T., Zavodszky, E., Hegde, RS. (2025)

Convergence of orphan quality control pathways at a ubiquitin chain-elongating ligase.

Show Preprint Mol Cell. 85(4):815-828.e10
Brunner, A., Morero, NR., Zhang, W., Hossain, MJ., Lampe, M., Pflaumer, H., Halavatyi, A., Peters, JM., Beckwith, KS., Ellenberg, J. (2025)

Quantitative imaging of loop extruders rebuilding interphase genome architecture after mitosis.

Show Preprint J Cell Biol. 224(3)
Barth, R., Davidson, IF., van der Torre, J., Taschner, M., Gruber, S., Peters, JM., Dekker, C. (2025)

SMC motor proteins extrude DNA asymmetrically and can switch directions.

Cell. 188(3):749-763.e21
Rudi, O., Hodakova, Z., Farias Saad, C., Winter, N., Grishkovskaya, I., Böhm, J., Jarck, G., Schleiffer, A., Haselbach, D., Bachmair, A. (2025)

The UBR Domain of Plant Ubr1 Homolog PRT6 Accommodates Basic and Hydrophobic Amino Termini for Substrate Recognition.

J Mol Biol. 437(4):168939
Tang, W., Costantino, L., Stocsits, R., Wutz, G., Ladurner, R., Hudecz, O., Mechtler, K., Peters, JM. (2025)

Cohesin positions the epigenetic reader Phf2 within the genome.

EMBO J. 44(3):736-766
Thomas, HF., Feng, S., Haslhofer, F., Huber, M., García Gallardo, M., Loubiere, V., Vanina, D., Pitasi, M., Stark, A., Buecker, C. (2025)

Enhancer cooperativity can compensate for loss of activity over large genomic distances.

Mol Cell. 85(2):362-375.e9
Bubis, JA., Arrey, TN., Damoc, E., Delanghe, B., Slovakova, J., Sommer, TM., Kagawa, H., Pichler, P., Rivron, N., Mechtler, K., Matzinger, M. (2025)

Challenging the Astral mass analyzer to quantify up to 5,300 proteins per single cell at unseen accuracy to uncover cellular heterogeneity.

Nat Methods.
Wilding, B., Woelflingseder, L., Baum, A., Chylinski, K., Vainorius, G., Gibson, N., Waizenegger, IC., Gerlach, D., Augsten, M., Spreitzer, F., Shirai, Y., Ikegami, M., Tilandyová, S., Scharn, D., Pearson, MA., Popow, J., Obenauf, AC., Yamamoto, N., Kondo, S., Opdam, FL., Bruining, A., Kohsaka, S., Kraut, N., Heymach, JV., Solca, F., Neumüller, RA. (2025)

Zongertinib (BI 1810631), an Irreversible HER2 TKI, Spares EGFR Signaling and Improves Therapeutic Response in Preclinical Models and Patients with HER2-Driven Cancers.

Cancer Discov. 15(1):119-138
Chiva, C., Olivella, R., Staes, A., Mendes Maia, T., Panse, C., Stejskal, K., Douché, T., Lombard, B., Schuhmann, A., Loew, D., Mechtler, K., Matondo, M., Rettel, M., Helm, D., Impens, F., Devos, S., Shevchenko, A., Nanni, P., Sabidó, E. (2025)

A Multiyear Longitudinal Harmonization Study of Quality Controls in Mass Spectrometry Proteomics Core Facilities.

J Proteome Res.
Onji, M., Sigl, V., Lendl, T., Novatchkova, M., Ullate-Agote, A., Andersson-Rolf, A., Kozieradzki, I., Koglgruber, R., Pai, TP., Lichtscheidl, D., Nayak, K., Zilbauer, M., Carranza García, NA., Sievers, LK., Falk-Paulsen, M., Cronin, SJF., Hagelkruys, A., Sawa, S., Osborne, LC., Rosenstiel, P., Pasparakis, M., Ruland, J., Takayanagi, H., Clevers, H., Koo, BK., Penninger, JM. (2025)

RANK drives structured intestinal epithelial expansion during pregnancy.

Nature. 637(8044):156-166
Liu, Y., Dong, J., Augusto Maya, J., Balzarotti, F., Unser, M. (2025)

Point-spread-function engineering in MINFLUX: optimality of donut and half-moon excitation patterns.

Opt Lett. 50(1):37-40
Zuber, J., Palm, W. (2025)

Modelling and deciphering tumour metabolism in CRISPR screens.

Nat Rev Cancer. 25(1):1-2
Birklbauer, MJ., Müller, F., Geetha, SS., Matzinger, M., Mechtler, K., Dorfer, V. (2024)

Proteome-wide non-cleavable crosslink identification with MS Annika 3.0 reveals the structure of the C. elegans Box C/D complex.

Commun Chem. 7(1):300
Uijttewaal, ECH., Lee, J., Sell, AC., Botay, N., Vainorius, G., Novatchkova, M., Baar, J., Yang, J., Potzler, T., van der Leij, S., Lowden, C., Sinner, J., Elewaut, A., Gavrilovic, M., Obenauf, A., Schramek, D., Elling, U. (2024)

CRISPR-StAR enables high-resolution genetic screening in complex in vivo models.

Nat Biotechnol.
Pre-print Blaha, A., Pauli, A. (2024)

Bouncer’s receptor on sperm: Investigating sperm-egg compatibility in fish

bioRxiv. 2024.12.13.628393
Janissen, R., Barth, R., Davidson, IF., Peters, JM., Dekker, C. (2024)

All eukaryotic SMC proteins induce a twist of -0.6 at each DNA loop extrusion step.

Sci Adv. 10(50):eadt1832
Deneke, VE., Blaha, A., Lu, Y., Suwita, JP., Draper, JM., Phan, CS., Panser, K., Schleiffer, A., Jacob, L., Humer, T., Stejskal, K., Krssakova, G., Roitinger, E., Handler, D., Kamoshita, M., Vance, TDR., Wang, X., Surm, JM., Moran, Y., Lee, JE., Ikawa, M., Pauli, A. (2024)

A conserved fertilization complex bridges sperm and egg in vertebrates.

Show Preprint Cell. 187(25):7066-7078.e22
Hofbauer, L., Pleyer, LM., Reiter, F., Schleiffer, A., Vlasova, A., Serebreni, L., Huang, A., Stark, A. (2024)

A genome-wide screen identifies silencers with distinct chromatin properties and mechanisms of repression.

Mol Cell. 84(23):4503-4521.e14
Pre-print Amann SJ, Dong K, Roehsner J, Krall D, Grishkovskaya I, Kotisch H, Schleiffer A, Roitinger E, Pauli A, Martin A, Haselbach D (2024)

PITHD1: An Endogenous Inhibitor of the 26S Proteasome During Cellular Dormancy

bioRxiv. 2024.12.04.626795
Pre-print Brunner HL, Kalis RW, Grundmann L, Hodáková Z, Koskova Z, Grishkovskaya I, de Almeida M, Hinterndorfer M, Höfflin S, Andersch F, Kotisch H, Dickmanns A, Cuylen-Häring S, Zuber J, Haselbach D (2024)

A multivalent adaptor mechanism drives the nuclear import of proteasomes

625870.
Pre-print Husremović T, Siess KM, Antonioli S, Meier V, Piëch L, Grishkovskaya I, Kircheva N, Angelova SE, Brandstätter A, Veis J, Miočić-Stošić F, Anrather D, Hartl M, Truebestein L, Žagrović B, Hann S, Bock C, Ogris E, Dudev T, Irwin NAT, Haselbach D, Leonard TA (2024)

PHLPP2 is a pseudophosphatase that lost activity in the metazoan ancestor

bioRxiv. 2024.12.03.625870
Arbanas, LI., Cura Costa, E., Chara, O., Otsuki, L., Tanaka, EM. (2024)

Lineage tracing of Shh+ floor plate cells and dynamics of dorsal-ventral gene expression in the regenerating axolotl spinal cord.

Dev Growth Differ. 66(8):414-425
Schuetz, T., Dolejsi, T., Beck, E., Fugger, F., Bild, A., Duin, MT., Gavranovic-Novakovic, J., Hilbold, E., Hoffmann, T., Zuber, J., Bauer, A., Ruschitzka, F., Bär, C., Penninger, JM., Haubner, BJ. (2024)

Murine neonatal cardiac regeneration depends on Insulin-like growth factor 1 receptor signaling.

Sci Rep. 14(1):22661
Iyer, DP., Khoei, HH., van der Weijden, VA., Kagawa, H., Pradhan, SJ., Novatchkova, M., McCarthy, A., Rayon, T., Simon, CS., Dunkel, I., Wamaitha, SE., Elder, K., Snell, P., Christie, L., Schulz, EG., Niakan, KK., Rivron, N., Bulut-Karslioğlu, A. (2024)

mTOR activity paces human blastocyst stage developmental progression.

Cell.
Bosone, C., Castaldi, D., Burkard, TR., Guzman, SJ., Wyatt, T., Cheroni, C., Caporale, N., Bajaj, S., Bagley, JA., Li, C., Sorre, B., Villa, CE., Testa, G., Krenn, V., Knoblich, JA. (2024)

A polarized FGF8 source specifies frontotemporal signatures in spatially oriented cell populations of cortical assembloids.

Nat Methods.
Hornung, V., Gaidt, MM. (2024)

Friendly fire: recognition of self by the innate immune system.

Curr Opin Immunol. 90:102457
Kofler, L., Grundmann, L., Gerhalter, M., Prattes, M., Merl-Pham, J., Zisser, G., Grishkovskaya, I., Hodirnau, VV., Vareka, M., Breinbauer, R., Hauck, SM., Haselbach, D., Bergler, H. (2024)

The novel ribosome biogenesis inhibitor usnic acid blocks nucleolar pre-60S maturation.

Nat Commun. 15(1):7511
Fedl, AS., Tagoh, H., Gruenbacher, S., Sun, Q., Schenk, RL., Froussios, K., Jaritz, M., Busslinger, M., Schwickert, TA. (2024)

Transcriptional function of E2A, Ebf1, Pax5, Ikaros and Aiolos analyzed by in vivo acute protein degradation in early B cell development.

Nat Immunol. 25(9):1663-1677
Pre-print Shah, AN., Leesch, F., Lorenzo-Orts, L., Grundmann, L., Novatchkova, M., Haselbach, D., Calo, E., Pauli, A. (2024)

A dual ribosomal system in the zebrafish soma and germline

bioRxiv. doi:10.1101/2024.08.29.610041
Zhang, L., Elkahal, J., Wang, T., Rimmer, R., Genzelinakh, A., Bassat, E., Wang, J., Perez, D., Kain, D., Lendengolts, D., Winkler, R., Bueno-Levy, H., Umansky, KB., Mishaly, D., Shakked, A., Miyara, S., Sarusi-Portuguez, A., Goldfinger, N., Prior, A., Morgenstern, D., Levin, Y., Addadi, Y., Li, B., Rotter, V., Katz, U., Tanaka, EM., Krizhanovsky, V., Sarig, R., Tzahor, E. (2024)

Egr1 regulates regenerative senescence and cardiac repair.

Nat Cardiovasc Res. 3(8):915-932
Pre-print De La Concepcion JC, Duverge H, Kim Y, Julian J, Xu HD, Ikene SA, Bianchi A, Grujic N, Papareddy RK, Grishkovskaya I, Haselbach D, Murray DH, Clavel M , Irwin NAT, Dagdas Y (2024)

Electrostatic changes enabled the diversification of an exocyst subunit via protein complex escape

bioRxiv. 2024.08.26.609756
Kawaguchi, A., Wang, J., Knapp, D., Murawala, P., Nowoshilow, S., Masselink, W., Taniguchi-Sugiura, Y., Fei, JF., Tanaka, EM. (2024)

A chromatin code for limb segment identity in axolotl limb regeneration.

Dev Cell. 59(16):2239-2253.e9
Pajenda, S., Gerges, D., Wagner, L., O'Connell, D., Aiad, M., Imre, R., Mechtler, K., Zimprich, A., Schmidt, A., Sengoelge, G., Winnicki, W. (2024)

Identification of Pathogenic Pathways for Recurrence of Focal Segmental Glomerulosclerosis after Kidney Transplantation.

Diagnostics (Basel). 14(15)
Vorländer, MK., Rothe, P., Kleifeld, J., Cormack, ED., Veleti, L., Riabov-Bassat, D., Fin, L., Phillips, AW., Cochella, L., Plaschka, C. (2024)

Mechanism for the initiation of spliceosome disassembly.

Nature. 632(8024):443-450
Krammer, T., Stuart, HT., Gromberg, E., Ishihara, K., Cislo, D., Melchionda, M., Becerril Perez, F., Wang, J., Costantini, E., Lehr, S., Arbanas, L., Hörmann, A., Neumüller, RA., Elvassore, N., Siggia, E., Briscoe, J., Kicheva, A., Tanaka, EM. (2024)

Mouse neural tube organoids self-organize floorplate through BMP-mediated cluster competition.

Dev Cell. 59(15):1940-1953.e10
Vogel, A., Arnese, R., Gudino Carrillo, RM., Sehr, D., Deszcz, L., Bylicki, A., Meinhart, A., Clausen, T. (2024)

UNC-45 assisted myosin folding depends on a conserved FX3HY motif implicated in Freeman Sheldon Syndrome.

Nat Commun. 15(1):6272
Blahetek, G., Mayer, C., Zuber, J., Lenter, M., Strobel, B. (2024)

Suppression of toxic transgene expression by optimized artificial miRNAs increases AAV vector yields in HEK-293 cells.

Mol Ther Methods Clin Dev. 32(3):101280
Beaufort, N., Ingendahl, L., Merdanovic, M., Schmidt, A., Podlesainski, D., Richter, T., Neumann, T., Kuszner, M., Vetter, IR., Stege, P., Burston, SG., Filipovic, A., Ruiz-Blanco, YB., Bravo-Rodriguez, K., Mieres-Perez, J., Beuck, C., Uebel, S., Zobawa, M., Schillinger, J., Malik, R., Todorov-Völgyi, K., Rey, J., Roberti, A., Hagemeier, B., Wefers, B., Müller, SA., Wurst, W., Sanchez-Garcia, E., Zimmermann, A., Hu, XY., Clausen, T., Huber, R., Lichtenthaler, SF., Schmuck, C., Giese, M., Kaiser, M., Ehrmann, M., Dichgans, M. (2024)

Rational correction of pathogenic conformational defects in HTRA1.

Nat Commun. 15(1):5944
Baumgartner, L., Ipsaro, JJ., Hohmann, U., Handler, D., Schleiffer, A., Duchek, P., Brennecke, J. (2024)

Evolutionary adaptation of an HP1-protein chromodomain integrates chromatin and DNA sequence signals.

Elife. 13
Rappol, T., Waldl, M., Chugunova, A., Hofacker, IL., Pauli, A., Vilardo, E. (2024)

tRNA expression and modification landscapes, and their dynamics during zebrafish embryo development.

Show Preprint Nucleic Acids Res.
Nemčko, F., Himmelsbach, M., Loubiere, V., Yelagandula, R., Pagani, M., Fasching, N., Brennecke, J., Elling, U., Stark, A., Ameres, SL. (2024)

Proteome-scale tagging and functional screening in mammalian cells by ORFtag.

Nat Methods.
Kagiou, C., Cisneros, JA., Farnung, J., Liwocha, J., Offensperger, F., Dong, K., Yang, K., Tin, G., Horstmann, CS., Hinterndorfer, M., Paulo, JA., Scholes, NS., Sanchez Avila, J., Fellner, M., Andersch, F., Hannich, JT., Zuber, J., Kubicek, S., Gygi, SP., Schulman, BA., Winter, GE. (2024)

Alkylamine-tethered molecules recruit FBXO22 for targeted protein degradation.

Nat Commun. 15(1):5409
Hartlmayr, D., Ctortecka, C., Mayer, R., Mechtler, K., Seth, A. (2024)

Label-Free Sample Preparation for Single-Cell Proteomics.

Methods Mol Biol. 2817:1-7
Mandlbauer, A., Sun, Q., Popitsch, N., Schwickert, T., Spanova, M., Wang, J., Ameres, SL., Busslinger, M., Cochella, L. (2024)

Mime-seq 2.0: a method to sequence microRNAs from specific mouse cell types.

EMBO J. 43(12):2506-2525
Wu, SS., Kim, S., Lee, H., Lee, JH., Park, SY., Bakonyi, R., Teriyapirom, I., Hallay, N., Pilat-Carotta, S., Theussl, HC., Kim, J., Lee, JH., Simons, BD., Kim, JK., Colozza, G., Koo, BK. (2024)

Red2Flpe-SCON: a versatile, multicolor strategy for generating mosaic conditional knockout mice.

Nat Commun. 15(1):4963
Frank, O., Balboa, DA., Novatchkova, M., Özkan, E., Strobl, MM., Yelagandula, R., Albanese, TG., Endler, L., Amman, F., Felsenstein, V., Gavrilovic, M., Acosta, M., Patocka, T., Vogt, A., Tamir, I., Klikovits, J., Zoufaly, A., Seitz, T., Födinger, M., Bergthaler, A., Indra, A., Schmid, D., Klimek, P., Stark, A., Allerberger, F., Benka, B., Reich, K., Cochella, L., Elling, U. (2024)

Genomic surveillance of SARS-CoV-2 evolution by a centralised pipeline and weekly focused sequencing, Austria, January 2021 to March 2023.

Euro Surveill. 29(23)
Martins-Costa, C., Wiegers, A., Pham, VA., Sidhaye, J., Doleschall, B., Novatchkova, M., Lendl, T., Piber, M., Peer, A., Möseneder, P., Stuempflen, M., Chow, SYA., Seidl, R., Prayer, D., Höftberger, R., Kasprian, G., Ikeuchi, Y., Corsini, NS., Knoblich, JA. (2024)

ARID1B controls transcriptional programs of axon projection in an organoid model of the human corpus callosum.

Cell Stem Cell. 31(6):866-885.e14
Prusén Mota, I., Galova, M., Schleiffer, A., Nguyen, TT., Kovacikova, I., Farias Saad, C., Litos, G., Nishiyama, T., Gregan, J., Peters, JM., Schlögelhofer, P. (2024)

Sororin is an evolutionary conserved antagonist of WAPL.

Nat Commun. 15(1):4729
Pre-print Shulkina, A., Hacker, K., Ehrmann, J. F., Budroni, V., Mandlbauer, A., Bock, J., Grabarczyk, D. B., Cochella, L., Clausen, T., Versteeg, G.A. (2024)

TRIM52 is a primate-specific player in the DNA repair process under tight proteolytic control by a triad of giant E3 ligases

bioRxiv. 10.1101/2024.05.16.594269
Pre-print Schwartz I, Budroni V, Meyenberg M, Hornegger H, Hacker K, Schwartz S, Hodakova Z, Grabarczyk DB, Ehrmann JF , Scinicariello S, Haselbach D, Menche J, Clausen T, Karagöz E, Versteeg GA (2024)

Guardian ubiquitin E3 ligases target cancer-associated APOBEC3 deaminases for degradation to promote human genome integrity

bioRxiv. 2024.04.23.590688
Pre-print Schwartz, I. Budroni, V., Meyenberg, M., Hornegger H., Hacker, K., Schwartz, S., Hodakova, Z., Grabarczyk, D. B., Ehrmann, J. F., Scinicariello, S., Haselbach, D., Menche, J., Clausen, T., Karagöz, G. E., Versteeg, G. A. (2024)

Multiple ubiquitin ligases protect human genome integrity by targeting cancer-associated APOBEC3 deaminases for degradation

bioRxiv. 10.1101/2024.04.23.590688
Riabov Bassat, D., Visanpattanasin, S., Vorländer, MK., Fin, L., Phillips, AW., Plaschka, C. (2024)

Structural basis of human U5 snRNP late biogenesis and recycling.

Nat Struct Mol Biol.
Pre-print Hohmann, U., Graf, M., Schellhaas, U., Pacheco-Fiallos, B., Fin, L., Riabov-Bassat, D., Pühringer, T., Szalay, MF., Tirián, L., Handler, D., Brennecke, J., Plaschka, C. (2024)

A molecular switch orchestrates the nuclear export of human messenger RNA

BioRxiv.
Greiner, G., Witzeneder, N., Klein, K., Tangermann, S., Kodajova, P., Jaeger, E., Ratzinger, F., Gerner, MC., Jawhar, M., Baumgartner, S., Fruehwirth, K., Schmetterer, KG., Zuber, J., Gleixner, KV., Mayerhofer, M., Schwarzinger, I., Simonitsch-Klupp, I., Esterbauer, H., Baer, C., Walter, W., Meggendorfer, M., Strassl, R., Haferlach, T., Hartmann, K., Kenner, L., Sperr, WR., Reiter, A., Sexl, V., Arock, M., Valent, P., Hoermann, G. (2024)

Tumor necrosis factor α promotes clonal dominance of KIT D816V+ cells in mastocytosis: role of survivin and impact on prognosis.

Blood. 143(11):1006-1017
Lorenzo-Orts, L., Pauli, A. (2024)

The molecular mechanisms underpinning maternal mRNA dormancy.

Biochem Soc Trans.
Junk, L., Schmiedel, VM., Guha, S., Fischel, K., Greb, P., Vill, K., Krisilia, V., van Geelen, L., Rumpel, K., Kaur, P., Krishnamurthy, RV., Narayanan, S., Shandil, RK., Singh, M., Kofink, C., Mantoulidis, A., Biber, P., Gmaschitz, G., Kazmaier, U., Meinhart, A., Leodolter, J., Hoi, D., Junker, S., Morreale, FE., Clausen, T., Kalscheuer, R., Weinstabl, H., Boehmelt, G. (2024)

Homo-BacPROTAC-induced degradation of ClpC1 as a strategy against drug-resistant mycobacteria.

Nat Commun. 15(1):2005
Pre-print Lambrecht F, Kröpelin A, Lüttich M, Habeck M, Haselbach D, Stark H (2024)

CowScape: Quantitative reconstruction of the conformational landscape of biological macromolecules from cryo-EM data

arXiv. 2402.11589
Pinheiro, D., Mitchel, J. (2024)

Pulling the strings on solid-to-liquid phase transitions in cell collectives.

Curr Opin Cell Biol. 86:102310
Cikes, D., Leutner, M., Cronin, SJF., Novatchkova, M., Pfleger, L., Klepochová, R., Lair, B., Lac, M., Bergoglio, C., Viguerie, N., Dürnberger, G., Roitinger, E., Grivej, M., Rullman, E., Gustafsson, T., Hagelkruys, A., Tavernier, G., Bourlier, V., Knauf, C., Krebs, M., Kautzky-Willer, A., Moro, C., Krssak, M., Orthofer, M., Penninger, JM. (2024)

Gpcpd1-GPC metabolic pathway is dysfunctional in aging and its deficiency severely perturbs glucose metabolism.

Nat Aging. 4(1):80-94
de Almeida, BP., Schaub, C., Pagani, M., Secchia, S., Furlong, EEM., Stark, A. (2024)

Targeted design of synthetic enhancers for selected tissues in the Drosophila embryo.

Nature. 626(7997):207-211
Matzinger, M., Schmücker, A., Yelagandula, R., Stejskal, K., Krššáková, G., Berger, F., Mechtler, K., Mayer, RL. (2024)

Micropillar arrays, wide window acquisition and AI-based data analysis improve comprehensiveness in multiple proteomic applications.

Nat Commun. 15(1):1019
Lorenzo-Orts, L., Strobl, M., Steinmetz, B., Leesch, F., Pribitzer, C., Roehsner, J., Schutzbier, M., Dürnberger, G., Pauli, A. (2024)

eIF4E1b is a non-canonical eIF4E protecting maternal dormant mRNAs.

Show Preprint EMBO Rep. 25(1):404-427
Ciriello, G., Magnani, L., Aitken, SJ., Akkari, L., Behjati, S., Hanahan, D., Landau, DA., Lopez-Bigas, N., Lupiáñez, DG., Marine, JC., Martin-Villalba, A., Natoli, G., Obenauf, AC., Oricchio, E., Scaffidi, P., Sottoriva, A., Swarbrick, A., Tonon, G., Vanharanta, S., Zuber, J. (2024)

Cancer Evolution: A Multifaceted Affair.

Cancer Discov. 14(1):36-48
Martins-Costa, C., Pham, VA., Sidhaye, J., Novatchkova, M., Wiegers, A., Peer, A., Möseneder, P., Corsini, NS., Knoblich, JA. (2023)

Morphogenesis and development of human telencephalic organoids in the absence and presence of exogenous extracellular matrix.

EMBO J. 42(22):e113213
Jessberger, G., Várnai, C., Stocsits, RR., Tang, W., Stary, G., Peters, JM. (2023)

Cohesin and CTCF do not assemble TADs in Xenopus sperm and male pronuclei.

Genome Res. 33(12):2094-107
Zheng, R., Matzinger, M., Mayer, RL., Valenta, A., Sun, X., Mechtler, K. (2023)

A High-Sensitivity Low-Nanoflow LC-MS Configuration for High-Throughput Sample-Limited Proteomics.

Anal Chem. 95(51):18673-18678
Mayer, RL., Mechtler, K. (2023)

Immunopeptidomics in the Era of Single-Cell Proteomics.

Biology (Basel). 12(12)
Reumann, D., Krauditsch, C., Novatchkova, M., Sozzi, E., Wong, SN., Zabolocki, M., Priouret, M., Doleschall, B., Ritzau-Reid, KI., Piber, M., Morassut, I., Fieseler, C., Fiorenzano, A., Stevens, MM., Zimmer, M., Bardy, C., Parmar, M., Knoblich, JA. (2023)

In vitro modeling of the human dopaminergic system using spatially arranged ventral midbrain-striatum-cortex assembloids.

Nat Methods. 20(12):2034-2047
Schmidt, C., Deyett, A., Ilmer, T., Haendeler, S., Torres Caballero, A., Novatchkova, M., Netzer, MA., Ceci Ginistrelli, L., Mancheno Juncosa, E., Bhattacharya, T., Mujadzic, A., Pimpale, L., Jahnel, SM., Cirigliano, M., Reumann, D., Tavernini, K., Papai, N., Hering, S., Hofbauer, P., Mendjan, S. (2023)

Multi-chamber cardioids unravel human heart development and cardiac defects.

Cell. 186(25):5587-5605.e27
Bodrug, T., Welsh, KA., Bolhuis, DL., Paulаkonis, E., Martinez-Chacin, RC., Liu, B., Pinkin, N., Bonacci, T., Cui, L., Xu, P., Roscow, O., Amann, SJ., Grishkovskaya, I., Emanuele, MJ., Harrison, JS., Steimel, JP., Hahn, KM., Zhang, W., Zhong, ED., Haselbach, D., Brown, NG. (2023)

Time-resolved cryo-EM (TR-EM) analysis of substrate polyubiquitination by the RING E3 anaphase-promoting complex/cyclosome (APC/C).

Nat Struct Mol Biol. 30(11):1663-1674
Dekker, C., Haering, CH., Peters, JM., Rowland, BD. (2023)

How do molecular motors fold the genome?

Science. 382(6671):646-648
Pinheiro, D. (2023)

How embryos sort themselves out.

Nat Rev Mol Cell Biol. 24(12):856
Ctortecka, C., Hartlmayr, D., Seth, A., Mendjan, S., Tourniaire, G., Udeshi, ND., Carr, SA., Mechtler, K. (2023)

An automated nanowell-array workflow for quantitative multiplexed single-cell proteomics sample preparation at high sensitivity.

Mol Cell Proteomics. :100665
Neault, M., Lebert-Ghali, CÉ., Fournier, M., Capdevielle, C., Garfinkle, EAR., Obermayer, A., Cotton, A., Boulay, K., Sawchyn, C., St-Amand, S., Nguyen, KH., Assaf, B., Mercier, FE., Delisle, JS., Drobetsky, EA., Hulea, L., Shaw, TI., Zuber, J., Gruber, TA., Melichar, HJ., Mallette, FA. (2023)

CBFA2T3-GLIS2-dependent pediatric acute megakaryoblastic leukemia is driven by GLIS2 and sensitive to navitoclax.

Cell Rep. 42(9):113084
Bhat, P., Cabrera-Quio, LE., Herzog, VA., Fasching, N., Pauli, A., Ameres, SL. (2023)

SLAMseq resolves the kinetics of maternal and zygotic gene expression during early zebrafish embryogenesis.

Show Preprint Cell Rep. 42(2):112070
Kugler, E., Madiwale, S., Yong, D., Thoms, JAI., Birger, Y., Sykes, DB., Schmoellerl, J., Drakul, A., Priebe, V., Yassin, M., Aqaqe, N., Rein, A., Fishman, H., Geron, I., Chen, CW., Raught, B., Liu, Q., Ogana, H., Liedke, E., Bourquin, JP., Zuber, J., Milyavsky, M., Pimanda, J., Privé, GG., Izraeli, S. (2023)

The NCOR-HDAC3 co-repressive complex modulates the leukemogenic potential of the transcription factor ERG.

Nat Commun. 14(1):5871
Ebner, J., Schmoellerl, J., Piontek, M., Manhart, G., Troester, S., Carter, BZ., Neubauer, H., Moriggl, R., Szakács, G., Zuber, J., Köcher, T., Andreeff, M., Sperr, WR., Valent, P., Grebien, F. (2023)

ABCC1 and glutathione metabolism limit the efficacy of BCL-2 inhibitors in acute myeloid leukemia.

Nat Commun. 14(1):5709
Gruenbacher, S., Jaritz, M., Hill, L., Schäfer, M., Busslinger, M. (2023)

Essential role of the Pax5 C-terminal domain in controlling B cell commitment and development.

J Exp Med. 220(12)
Li, C., Fleck, JS., Martins-Costa, C., Burkard, TR., Themann, J., Stuempflen, M., Peer, AM., Vertesy, Á., Littleboy, JB., Esk, C., Elling, U., Kasprian, G., Corsini, NS., Treutlein, B., Knoblich, JA. (2023)

Single-cell brain organoid screening identifies developmental defects in autism.

Nature. 621(7978):373-380
Schwartz, I., Vunjak, M., Budroni, V., Cantoran García, A., Mastrovito, M., Soderholm, A., Hinterndorfer, M., de Almeida, M., Hacker, K., Wang, J., Froussios, K., Jude, J., Decker, T., Zuber, J., Versteeg, GA. (2023)

SPOP targets the immune transcription factor IRF1 for proteasomal degradation.

Elife. 12
Vainorius, G., Novatchkova, M., Michlits, G., Baar, JC., Raupach, C., Lee, J., Yelagandula, R., Wernig, M., Elling, U. (2023)

Ascl1 and Ngn2 convert mouse embryonic stem cells to neurons via functionally distinct paths.

Nat Commun. 14(1):5341
Ross, SE., Vázquez-Marín, J., Gert, KRB., González-Rajal, Á., Dinger, ME., Pauli, A., Martínez-Morales, JR., Bogdanovic, O. (2023)

Evolutionary conservation of embryonic DNA methylome remodelling in distantly related teleost species.

Show Preprint Nucleic Acids Res.
Nagasaka, K., Davidson, IF., Stocsits, RR., Tang, W., Wutz, G., Batty, P., Panarotto, M., Litos, G., Schleiffer, A., Gerlich, DW., Peters, JM. (2023)

Cohesin mediates DNA loop extrusion and sister chromatid cohesion by distinct mechanisms.

Mol Cell.
Falcon, F., Tanaka, EM., Rodriguez-Terrones, D. (2023)

Transposon waves at the water-to-land transition.

Curr Opin Genet Dev. 81:102059
Hodáková, Z., Grishkovskaya, I., Brunner, HL., Bolhuis, DL., Belačić, K., Schleiffer, A., Kotisch, H., Brown, NG., Haselbach, D. (2023)

Cryo-EM structure of the chain-elongating E3 ubiquitin ligase UBR5.

EMBO J. 42(16):e113348
Birklbauer, MJ., Matzinger, M., Müller, F., Mechtler, K., Dorfer, V. (2023)

MS Annika 2.0 Identifies Cross-Linked Peptides in MS2-MS3-Based Workflows at High Sensitivity and Specificity.

J Proteome Res.
Hoffmann, T., Hörmann, A., Corcokovic, M., Zmajkovic, J., Hinterndorfer, M., Salkanovic, J., Spreitzer, F., Köferle, A., Gitschtaler, K., Popa, A., Oberndorfer, S., Andersch, F., Schaefer, M., Fellner, M., Budano, N., Ruppert, JG., Chetta, P., Wurm, M., Zuber, J., Neumüller, RA. (2023)

Precision RNAi using synthetic shRNAmir target sites.

Elife. 12
Hill, L., Jaritz, M., Tagoh, H., Schindler, K., Kostanova-Poliakova, D., Sun, Q., Schwickert, TA., Leeb, M., Busslinger, M. (2023)

Enhancers of the PAIR4 regulatory module promote distal VH gene recombination at the Igh locus.

EMBO J. 42(15):e112741
Michael, AK., Stoos, L., Crosby, P., Eggers, N., Nie, XY., Makasheva, K., Minnich, M., Healy, KL., Weiss, J., Kempf, G., Cavadini, S., Kater, L., Seebacher, J., Vecchia, L., Chakraborty, D., Isbel, L., Grand, RS., Andersch, F., Fribourgh, JL., Schübeler, D., Zuber, J., Liu, AC., Becker, PB., Fierz, B., Partch, CL., Menet, JS., Thomä, NH. (2023)

Cooperation between bHLH transcription factors and histones for DNA access.

Nature. 619(7969):385-393
Jacobs, J., Pagani, M., Wenzl, C., Stark, A. (2023)

Widespread regulatory specificities between transcriptional co-repressors and enhancers in Drosophila.

Science. 381(6654):198-204
Batty, P., Langer, CC., Takács, Z., Tang, W., Blaukopf, C., Peters, JM., Gerlich, DW. (2023)

Cohesin-mediated DNA loop extrusion resolves sister chromatids in G2 phase.

EMBO J. :e113475
Bayerl, F., Meiser, P., Donakonda, S., Hirschberger, A., Lacher, SB., Pedde, AM., Hermann, CD., Elewaut, A., Knolle, M., Ramsauer, L., Rudolph, TJ., Grassmann, S., Öllinger, R., Kirchhammer, N., Trefny, M., Anton, M., Wohlleber, D., Höchst, B., Zaremba, A., Krüger, A., Rad, R., Obenauf, AC., Schadendorf, D., Zippelius, A., Buchholz, VR., Schraml, BU., Böttcher, JP. (2023)

Tumor-derived prostaglandin E2 programs cDC1 dysfunction to impair intratumoral orchestration of anti-cancer T cell responses.

Immunity. 56(6):1341-1358.e11
Dobbelaere, J., Su, TY., Erdi, B., Schleiffer, A., Dammermann, A. (2023)

A phylogenetic profiling approach identifies novel ciliogenesis genes in Drosophila and C. elegans.

EMBO J. :e113616
Gert, KRB., Panser, K., Surm, J., Steinmetz, BS., Schleiffer, A., Jovine, L., Moran, Y., Kondrashov, F., Pauli, A. (2023)

Divergent molecular signatures in fish Bouncer proteins define cross-fertilization boundaries.

Show Preprint Nat Commun. 14(1):3506
Barth, R., Pradhan, B., Kim, E., Davidson, IF., van der Torre, J., Peters, JM., Dekker, C. (2023)

Testing pseudotopological and nontopological models for SMC-driven DNA loop extrusion against roadblock-traversal experiments.

Sci Rep. 13(1):8100
Chan, YC., Kienle, E., Oti, M., Di Liddo, A., Mendez-Lago, M., Aschauer, DF., Peter, M., Pagani, M., Arnold, C., Vonderheit, A., Schön, C., Kreuz, S., Stark, A., Rumpel, S. (2023)

An unbiased AAV-STARR-seq screen revealing the enhancer activity map of genomic regions in the mouse brain in vivo.

Sci Rep. 13(1):6745
Hoi, DM., Junker, S., Junk, L., Schwechel, K., Fischel, K., Podlesainski, D., Hawkins, PME., van Geelen, L., Kaschani, F., Leodolter, J., Morreale, FE., Kleine, S., Guha, S., Rumpel, K., Schmiedel, VM., Weinstabl, H., Meinhart, A., Payne, RJ., Kaiser, M., Hartl, M., Boehmelt, G., Kazmaier, U., Kalscheuer, R., Clausen, T. (2023)

Clp-targeting BacPROTACs impair mycobacterial proteostasis and survival.

Cell. 186(10):2176-2192.e22
Davidson, IF., Barth, R., Zaczek, M., van der Torre, J., Tang, W., Nagasaka, K., Janissen, R., Kerssemakers, J., Wutz, G., Dekker, C., Peters, JM. (2023)

CTCF is a DNA-tension-dependent barrier to cohesin-mediated loop extrusion.

Show Preprint Nature. 616(7958):822-827
Hill, L., Wutz, G., Jaritz, M., Tagoh, H., Calderón, L., Peters, JM., Goloborodko, A., Busslinger, M. (2023)

Igh and Igk loci use different folding principles for V gene recombination due to distinct chromosomal architectures of pro-B and pre-B cells.

Nat Commun. 14(1):2316
Devignot, S., Sha, TW., Burkard, TR., Schmerer, P., Hagelkruys, A., Mirazimi, A., Elling, U., Penninger, JM., Weber, F. (2023)

Low-density lipoprotein receptor-related protein 1 (LRP1) as an auxiliary host factor for RNA viruses.

Life Sci Alliance. 6(7)
Cikes, D., Elsayad, K., Sezgin, E., Koitai, E., Torma, F., Orthofer, M., Yarwood, R., Heinz, LX., Sedlyarov, V., Miranda, ND., Taylor, A., Grapentine, S., Al-Murshedi, F., Abot, A., Weidinger, A., Kutchukian, C., Sanchez, C., Cronin, SJF., Novatchkova, M., Kavirayani, A., Schuetz, T., Haubner, B., Haas, L., Hagelkruys, A., Jackowski, S., Kozlov, AV., Jacquemond, V., Knauf, C., Superti-Furga, G., Rullman, E., Gustafsson, T., McDermot, J., Lowe, M., Radak, Z., Chamberlain, JS., Bakovic, M., Banka, S., Penninger, JM. (2023)

Author Correction: PCYT2-regulated lipid biosynthesis is critical to muscle health and ageing.

Nat Metab.
Pacheco-Fiallos, B., Vorländer, MK., Riabov-Bassat, D., Fin, L., O'Reilly, FJ., Ayala, FI., Schellhaas, U., Rappsilber, J., Plaschka, C. (2023)

mRNA recognition and packaging by the human transcription-export complex.

Nature.
Serebreni, L., Pleyer, LM., Haberle, V., Hendy, O., Vlasova, A., Loubiere, V., Nemčko, F., Bergauer, K., Roitinger, E., Mechtler, K., Stark, A. (2023)

Functionally distinct promoter classes initiate transcription via different mechanisms reflected in focused versus dispersed initiation patterns.

EMBO J. :e113519
Appel, LM., Benedum, J., Engl, M., Platzer, S., Schleiffer, A., Strobl, X., Slade, D. (2023)

SPOC domain proteins in health and disease.

Genes Dev. 37(5-6):140-170
Sidhaye, J., Trepte, P., Sepke, N., Novatchkova, M., Schutzbier, M., Dürnberger, G., Mechtler, K., Knoblich, JA. (2023)

Integrated transcriptome and proteome analysis reveals posttranscriptional regulation of ribosomal genes in human brain organoids.

Elife. 12
Cikes, D., Elsayad, K., Sezgin, E., Koitai, E., Torma, F., Orthofer, M., Yarwood, R., Heinz, LX., Sedlyarov, V., Miranda, ND., Taylor, A., Grapentine, S., Al-Murshedi, F., Abot, A., Weidinger, A., Kutchukian, C., Sanchez, C., Cronin, SJF., Novatchkova, M., Kavirayani, A., Schuetz, T., Haubner, B., Haas, L., Hagelkruys, A., Jackowski, S., Kozlov, AV., Jacquemond, V., Knauf, C., Superti-Furga, G., Rullman, E., Gustafsson, T., McDermot, J., Lowe, M., Radak, Z., Chamberlain, JS., Bakovic, M., Banka, S., Penninger, JM. (2023)

PCYT2-regulated lipid biosynthesis is critical to muscle health and ageing.

Nat Metab. 5(3):495-515
Scinicariello, S., Soderholm, A., Schäfer, M., Shulkina, A., Schwartz, I., Hacker, K., Gogova, R., Kalis, R., Froussios, K., Budroni, V., Bestehorn, A., Clausen, T., Kovarik, P., Zuber, J., Versteeg, GA. (2023)

HUWE1 controls tristetraprolin proteasomal degradation by regulating its phosphorylation.

Show Preprint Elife. 12
Ehrmann, JF., Grabarczyk, DB., Heinke, M., Deszcz, L., Kurzbauer, R., Hudecz, O., Shulkina, A., Gogova, R., Meinhart, A., Versteeg, GA., Clausen, T. (2023)

Structural basis for regulation of apoptosis and autophagy by the BIRC6/SMAC complex.

Science. 379(6637):1117-1123
Huljev, K., Shamipour, S., Pinheiro, D., Preusser, F., Steccari, I., Sommer, CM., Naik, S., Heisenberg, CP. (2023)

A hydraulic feedback loop between mesendoderm cell migration and interstitial fluid relocalization promotes embryonic axis formation in zebrafish.

Dev Cell.
Feng, C., Roitinger, E., Hudecz, O., Cuacos, M., Lorenz, J., Schubert, V., Wang, B., Wang, R., Mechtler, K., Heckmann, S. (2023)

TurboID-based proteomic profiling of meiotic chromosome axes in Arabidopsis thaliana.

Nat Plants.
Banigan, EJ., Tang, W., van den Berg, AA., Stocsits, RR., Wutz, G., Brandão, HB., Busslinger, GA., Peters, JM., Mirny, LA. (2023)

Transcription shapes 3D chromatin organization by interacting with loop extrusion.

Show Preprint Proc Natl Acad Sci U S A. 120(11):e2210480120
D'Artista, L., Moschopoulou, AA., Barozzi, I., Craig, AJ., Seehawer, M., Herrmann, L., Minnich, M., Kang, TW., Rist, E., Henning, M., Klotz, S., Heinzmann, F., Harbig, J., Sipos, B., Longerich, T., Eilers, M., Dauch, D., Zuber, J., Wang, XW., Zender, L. (2023)

MYC determines lineage commitment in kras driven primary liver cancer development.

J Hepatol.
Remick, BC., Gaidt, MM., Vance, RE. (2023)

Effector-Triggered Immunity.

Annu Rev Immunol.
Matzinger, M., Müller, E., Dürnberger, G., Pichler, P., Mechtler, K. (2023)

Robust and Easy-to-Use One-Pot Workflow for Label-Free Single-Cell Proteomics.

Anal Chem. 95(9):4435-4445
Costea, J., Schoeberl, UE., Malzl, D., von der Linde, M., Fitz, J., Gupta, A., Makharova, M., Goloborodko, A., Pavri, R. (2023)

A de novo transcription-dependent TAD boundary underpins critical multiway interactions during antibody class switch recombination.

Show Preprint Mol Cell. 83(5):681-697.e7
Ishihara, K., Mukherjee, A., Gromberg, E., Brugués, J., Tanaka, EM., Jülicher, F. (2023)

Topological morphogenesis of neuroepithelial organoids.

Nat Phys. 19(2):177-183
Heidari Khoei, H., Javali, A., Kagawa, H., Sommer, TM., Sestini, G., David, L., Slovakova, J., Novatchkova, M., Scholte Op Reimer, Y., Rivron, N. (2023)

Generating human blastoids modeling blastocyst-stage embryos and implantation.

Nat Protoc.
Picchianti, L., Sánchez de Medina Hernández, V., Zhan, N., Irwin, NA., Groh, R., Stephani, M., Hornegger, H., Beveridge, R., Sawa-Makarska, J., Lendl, T., Grujic, N., Naumann, C., Martens, S., Richards, TA., Clausen, T., Ramundo, S., Karagöz, GE., Dagdas, Y. (2023)

Shuffled ATG8 interacting motifs form an ancestral bridge between UFMylation and autophagy.

EMBO J. :e112053
Brandstoetter, T., Schmoellerl, J., Grausenburger, R., Kollmann, S., Doma, E., Huuhtanen, J., Klampfl, T., Eder, T., Grebien, F., Hoermann, G., Zuber, J., Mustjoki, S., Maurer, B., Sexl, V. (2023)

SBNO2 is a critical mediator of STAT3-driven hematological malignancies.

Blood.
Schmoellerl, J., Barbosa, IAM., Minnich, M., Andersch, F., Smeenk, L., Havermans, M., Eder, T., Neumann, T., Jude, J., Fellner, M., Ebert, A., Steininger, M., Delwel, R., Grebien, F., Zuber, J. (2023)

EVI1 drives leukemogenesis through aberrant ERG activation.

Blood. 141(5):453-466
Dorl, S., Winkler, S., Mechtler, K., Dorfer, V. (2023)

MS Ana: Improving Sensitivity in Peptide Identification with Spectral Library Search.

J Proteome Res. 22(2):462-470
Klaus, L., de Almeida, BP., Vlasova, A., Nemčko, F., Schleiffer, A., Bergauer, K., Hofbauer, L., Rath, M., Stark, A. (2023)

Systematic identification and characterization of repressive domains in Drosophila transcription factors.

EMBO J. 42(3):e112100
Carlet, M., Schmelz, K., Vergalli, J., Herold, T., Senft, D., Jurinovic, V., Hoffmann, T., Proba, J., Weichert, N., Junghanß, C., Roth, M., Eschenburg, G., Barz, M., Henze, G., Eckert, C., Eggert, A., Zuber, J., Hundsdoerfer, P., Jeremias, I. (2023)

X-linked inhibitor of apoptosis protein represents a promising therapeutic target for relapsed/refractory ALL.

EMBO Mol Med. 15(1):e14557
Leesch, F., Lorenzo-Orts, L., Pribitzer, C., Grishkovskaya, I., Roehsner, J., Chugunova, A., Matzinger, M., Roitinger, E., Belačić, K., Kandolf, S., Lin, TY., Mechtler, K., Meinhart, A., Haselbach, D., Pauli, A. (2023)

A molecular network of conserved factors keeps ribosomes dormant in the egg.

Show Preprint Nature.
Gwosch, KC., Balzarotti, F., Pape, JK., Hoess, P., Ellenberg, J., Ries, J., Matti, U., Schmidt, R., Sahl, SJ., Hell, SW. (2023)

Reply to: Assessment of 3D MINFLUX data for quantitative structural biology in cells.

Nat Methods. 20(1):52-54
Lugmayr, W., Kotov, V., Goessweiner-Mohr, N., Wald, J., DiMaio, F., Marlovits, TC. (2023)

StarMap: a user-friendly workflow for Rosetta-driven molecular structure refinement.

Nat Protoc. 18(1):239-264
Delás, MJ., Kalaitzis, CM., Fawzi, T., Demuth, M., Zhang, I., Stuart, HT., Costantini, E., Ivanovitch, K., Tanaka, EM., Briscoe, J. (2023)

Developmental cell fate choice in neural tube progenitors employs two distinct cis-regulatory strategies.

Dev Cell. 58(1):3-17.e8
Amann, SJ., Keihsler, D., Bodrug, T., Brown, NG., Haselbach, D. (2023)

Frozen in time: analyzing molecular dynamics with time-resolved cryo-EM.

Structure. 31(1):4-19
Leiendecker, L., Neumann, T., Jung, PS., Cronin, SM., Steinacker, TL., Schleiffer, A., Schutzbier, M., Mechtler, K., Kervarrec, T., Laurent, E., Bachiri, K., Coyaud, E., Murali, R., Busam, KJ., Itzinger-Monshi, B., Kirnbauer, R., Cerroni, L., Calonje, E., Rütten, A., Stubenrauch, F., Griewank, KG., Wiesner, T., Obenauf, AC. (2023)

Human Papillomavirus 42 Drives Digital Papillary Adenocarcinoma and Elicits a Germ Cell-like Program Conserved in HPV-Positive Cancers.

Cancer Discov. 13(1):70-84
Yelagandula, R., Stecher, K., Novatchkova, M., Michetti, L., Michlits, G., Wang, J., Hofbauer, P., Vainorius, G., Pribitzer, C., Isbel, L., Mendjan, S., Schübeler, D., Elling, U., Brennecke, J., Bell, O. (2023)

ZFP462 safeguards neural lineage specification by targeting G9A/GLP-mediated heterochromatin to silence enhancers.

Nat Cell Biol.
Kaiser, FMP., Gruenbacher, S., Oyaga, MR., Nio, E., Jaritz, M., Sun, Q., van der Zwaag, W., Kreidl, E., Zopf, LM., Dalm, VASH., Pel, J., Gaiser, C., van der Vliet, R., Wahl, L., Rietman, A., Hill, L., Leca, I., Driessen, G., Laffeber, C., Brooks, A., Katsikis, PD., Lebbink, JHG., Tachibana, K., van der Burg, M., De Zeeuw, CI., Badura, A., Busslinger, M. (2023)

Correction: Biallelic PAX5 mutations cause hypogammaglobulinemia, sensorimotor deficits, and autism spectrum disorder.

J Exp Med. 220(1)
Kawaguchi, A., Tanaka, EM. (2023)

Chromosome Conformation Capture for Large Genomes.

Methods Mol Biol. 2562:291-318
Taniguchi-Sugiura, Y., Tanaka, EM. (2023)

Artificial Insemination in Axolotl.

Methods Mol Biol. 2562:417-423
Masselink, W., Tanaka, EM. (2023)

Ethyl Cinnamate-Based Tissue Clearing Strategies.

Methods Mol Biol. 2562:123-133
Nowoshilow, S., Tanaka, EM. (2023)

Navigation and Use of Custom Tracks within the Axolotl Genome Browser.

Methods Mol Biol. 2562:273-289
Murawala, P., Oliveira, CR., Okulski, H., Yun, MH., Tanaka, EM. (2023)

Baculovirus Production and Infection in Axolotls.

Methods Mol Biol. 2562:369-387
Tanaka, EM. (2023)

Now that We Got There, What Next?

Methods Mol Biol. 2562:471-479
Wöhner, M., Pinter, T., Bönelt, P., Hagelkruys, A., Kostanova-Poliakova, D., Stadlmann, J., Konieczny, SF., Fischer, M., Jaritz, M., Busslinger, M. (2022)

The Xbp1-regulated transcription factor Mist1 restricts antibody secretion by restraining Blimp1 expression in plasma cells.

Front Immunol. 13:859598
Wu, SS., Lee, H., Szép-Bakonyi, R., Colozza, G., Boese, A., Gert, KR., Hallay, N., Lee, JH., Kim, J., Zhu, Y., Linssen, MM., Pilat-Carotta, S., Hohenstein, P., Theussl, HC., Pauli, A., Koo, BK. (2022)

SCON-a Short Conditional intrON for conditional knockout with one-step zygote injection.

Show Preprint Exp Mol Med.
Kaucka, M., Joven Araus, A., Tesarova, M., Currie, JD., Boström, J., Kavkova, M., Petersen, J., Yao, Z., Bouchnita, A., Hellander, A., Zikmund, T., Elewa, A., Newton, PT., Fei, JF., Chagin, AS., Fried, K., Tanaka, EM., Kaiser, J., Simon, A., Adameyko, I. (2022)

Altered developmental programs and oriented cell divisions lead to bulky bones during salamander limb regeneration.

Nat Commun. 13(1):6949
Stejskal, K., Jeff, OB., Matzinger, M., Dürnberger, G., Boychenko, A., Jacobs, P., Mechtler, K. (2022)

Deep Proteome Profiling with Reduced Carryover Using Superficially Porous Microfabricated nanoLC Columns.

Anal Chem.
Hagelkruys, A., Horrer, M., Taubenschmid-Stowers, J., Kavirayani, A., Novatchkova, M., Orthofer, M., Pai, TP., Cikes, D., Zhuk, S., Balmaña, M., Esk, C., Koglgruber, R., Moeseneder, P., Lazovic, J., Zopf, LM., Cronin, SJF., Elling, U., Knoblich, JA., Penninger, JM. (2022)

The HUSH complex controls brain architecture and protocadherin fidelity.

Sci Adv. 8(44):eabo7247
Butz, S., Schmolka, N., Karemaker, ID., Villaseñor, R., Schwarz, I., Domcke, S., Uijttewaal, ECH., Jude, J., Lienert, F., Krebs, AR., de Wagenaar, NP., Bao, X., Zuber, J., Elling, U., Schübeler, D., Baubec, T. (2022)

DNA sequence and chromatin modifiers cooperate to confer epigenetic bistability at imprinting control regions.

Nat Genet.
Le Pannérer, MM., Diesch, J., Casquero, R., Maher, M., Garcia, O., Haferlach, T., Zuber, J., Kündgen, A., Götze, KS., Buschbeck, M. (2022)

Different Gene Sets Are Associated With Azacitidine Response In Vitro Versus in Myelodysplastic Syndrome Patients.

Hemasphere. 6(11):e792
Hu, Y., Pan, X., Shi, Y., Qiu, Y., Wang, L., Murawala, P., Liu, Y., Xing, W., Tanaka, EM., Fei, JF. (2022)

Muscles are barely required for the patterning and cell dynamics in axolotl limb regeneration.

Front Genet. 13:1036641
Pre-print Prusen Mota, I., Galova, M., Schleiffer, A., Nguyen, T.-T., Kovacikova, I., Nishiyama, T., Gregan, J., Peters, J.-M., Schlögelhofer, P. (2022)

Sororin is an evolutionary conserved antagonist of WAPL

bioRxiv. 2022.10.24.513534
Pradhan, B., Barth, R., Kim, E., Davidson, IF., Bauer, B., van Laar, T., Yang, W., Ryu, JK., van der Torre, J., Peters, JM., Dekker, C. (2022)

SMC complexes can traverse physical roadblocks bigger than their ring size.

Show Preprint Cell Rep. 41(3):111491
Hendy, O., Serebreni, L., Bergauer, K., Muerdter, F., Huber, L., Nemčko, F., Stark, A. (2022)

Developmental and housekeeping transcriptional programs in Drosophila require distinct chromatin remodelers.

Mol Cell. 82(19):3598-3612.e7
Zheng, R., Stejskal, K., Pynn, C., Mechtler, K., Boychenko, A. (2022)

Deep Single-Shot NanoLC-MS Proteome Profiling with a 1500 Bar UHPLC System, Long Fully Porous Columns, and HRAM MS.

J Proteome Res. 21(10):2545-2551
Pechincha, C., Groessl, S., Kalis, R., de Almeida, M., Zanotti, A., Wittmann, M., Schneider, M., de Campos, RP., Rieser, S., Brandstetter, M., Schleiffer, A., Müller-Decker, K., Helm, D., Jabs, S., Haselbach, D., Lemberg, MK., Zuber, J., Palm, W. (2022)

Lysosomal enzyme trafficking factor LYSET enables nutritional usage of extracellular proteins.

Science. 378(6615):eabn5637
Pinter, T., Fischer, M., Schäfer, M., Fellner, M., Jude, J., Zuber, J., Busslinger, M., Wöhner, M. (2022)

Comprehensive CRISPR-Cas9 screen identifies factors which are important for plasmablast development.

Front Immunol. 13:979606
Stock, J., Kazmar, T., Schlumm, F., Hannezo, E., Pauli, A. (2022)

A self-generated Toddler gradient guides mesodermal cell migration.

Show Preprint Sci Adv. 8(37):eadd2488
Prattes, M., Grishkovskaya, I., Hodirnau, VV., Hetzmannseder, C., Zisser, G., Sailer, C., Kargas, V., Loibl, M., Gerhalter, M., Kofler, L., Warren, AJ., Stengel, F., Haselbach, D., Bergler, H. (2022)

Visualizing maturation factor extraction from the nascent ribosome by the AAA-ATPase Drg1.

Nat Struct Mol Biol. 29(9):942-953
Pajenda, S., Wagner, L., Gerges, D., Herkner, H., Tevdoradze, T., Mechtler, K., Schmidt, A., Winnicki, W. (2022)

Urinary Collectrin (TMEM27) as Novel Marker for Acute Kidney Injury.

Life (Basel). 12(9)
Nagasaka, K., Davidson, I.F., Stocsits, R., Tang, W., Wutz, G., Betty, P., Panarotto, M., Litos, G., Schleiffer, A., Gerlich, D. and Peters, J.-M. (2022)

Cohesin mediates DNA loop extrusion and sister chromatid cohesion by distinct mechanisms

bioRxiv. 2022.09.23.509019
Peycheva, M., Neumann, T., Malzl, D., Nazarova, M., Schoeberl, UE., Pavri, R. (2022)

DNA replication timing directly regulates the frequency of oncogenic chromosomal translocations.

Science. 377(6612):eabj5502
Lust, K., Maynard, A., Gomes, T., Fleck, JS., Camp, JG., Tanaka, EM., Treutlein, B. (2022)

Single-cell analyses of axolotl telencephalon organization, neurogenesis, and regeneration.

Science. 377(6610):eabp9262
Kagawa, H., Javali, A., Heidari Khoei, H., Sommer, TM., Sestini, G., Novatchkova, M., Scholte Op Reimer, Y., Rivron, N. (2022)

Protocol for Human Blastoids Modeling Blastocyst Development and Implantation.

J Vis Exp. (186)
Vorländer, MK., Pacheco-Fiallos, B., Plaschka, C. (2022)

Structural basis of mRNA maturation: Time to put it together.

Curr Opin Struct Biol. 75:102431
Peter, B., Eisenwort, G., Sadovnik, I., Bauer, K., Willmann, M., Rülicke, T., Berger, D., Stefanzl, G., Greiner, G., Hoermann, G., Keller, A., Wolf, D., Čulen, M., Winter, GE., Hoffmann, T., Schiefer, AI., Sperr, WR., Zuber, J., Mayer, J., Valent, P. (2022)

BRD4 degradation blocks expression of MYC and multiple forms of stem cell resistance in Ph+ chronic myeloid leukemia.

Am J Hematol. 97(9):1215-1225
Kaiser, FMP., Gruenbacher, S., Oyaga, MR., Nio, E., Jaritz, M., Sun, Q., van der Zwaag, W., Kreidl, E., Zopf, LM., Dalm, VASH., Pel, J., Gaiser, C., van der Vliet, R., Wahl, L., Rietman, A., Hill, L., Leca, I., Driessen, G., Laffeber, C., Brooks, A., Katsikis, PD., Lebbink, JHG., Tachibana, K., van der Burg, M., De Zeeuw, CI., Badura, A., Busslinger, M. (2022)

Biallelic PAX5 mutations cause hypogammaglobulinemia, sensorimotor deficits, and autism spectrum disorder.

J Exp Med. 219(9)
Vértesy, Á., Eichmüller, OL., Naas, J., Novatchkova, M., Esk, C., Balmaña, M., Ladstaetter, S., Bock, C., von Haeseler, A., Knoblich, JA. (2022)

Gruffi: an algorithm for computational removal of stressed cells from brain organoid transcriptomic datasets.

EMBO J. :e111118
Obenauf, AC. (2022)

Mechanism-based combination therapies for metastatic cancer.

Sci Transl Med. 14(655):eadd0887
Wilding, B., Scharn, D., Böse, D., Baum, A., Santoro, V., Chetta, P., Schnitzer, R., Botesteanu, DA., Reiser, C., Kornigg, S., Knesl, P., Hörmann, A., Köferle, A., Corcokovic, M., Lieb, S., Scholz, G., Bruchhaus, J., Spina, M., Balla, J., Peric-Simov, B., Zimmer, J., Mitzner, S., Fett, TN., Beran, A., Lamarre, L., Gerstberger, T., Gerlach, D., Bauer, M., Bergner, A., Schlattl, A., Bader, G., Treu, M., Engelhardt, H., Zahn, S., Fuchs, JE., Zuber, J., Ettmayer, P., Pearson, M., Petronczki, M., Kraut, N., McConnell, DB., Solca, F., Neumüller, RA. (2022)

Discovery of potent and selective HER2 inhibitors with efficacy against HER2 exon 20 insertion-driven tumors, which preserve wild-type EGFR signaling.

Nat Cancer. 3(7):821-836
Polikarpova, A., Ellinghaus, A., Schmidt-Bleek, O., Grosser, L., Bucher, CH., Duda, GN., Tanaka, EM., Schmidt-Bleek, K. (2022)

The specialist in regeneration-the Axolotl-a suitable model to study bone healing?

NPJ Regen Med. 7(1):35
Matzinger, M., Vasiu, A., Madalinski, M., Müller, F., Stanek, F., Mechtler, K. (2022)

Mimicked synthetic ribosomal protein complex for benchmarking crosslinking mass spectrometry workflows.

Nat Commun. 13(1):3975
Lin, TY., Taniguchi-Sugiura, Y., Murawala, P., Hermann, S., Tanaka, EM. (2022)

Inducible and tissue-specific cell labeling in Cre-ERT2 transgenic Xenopus lines.

Dev Growth Differ. 64(5):243-253
Morreale, FE., Kleine, S., Leodolter, J., Junker, S., Hoi, DM., Ovchinnikov, S., Okun, A., Kley, J., Kurzbauer, R., Junk, L., Guha, S., Podlesainski, D., Kazmaier, U., Boehmelt, G., Weinstabl, H., Rumpel, K., Schmiedel, VM., Hartl, M., Haselbach, D., Meinhart, A., Kaiser, M., Clausen, T. (2022)

BacPROTACs mediate targeted protein degradation in bacteria.

Show Preprint Cell. 185(13):2338-2353.e18
Otsuki, L., Tanaka, EM. (2022)

Positional Memory in Vertebrate Regeneration: A Century's Insights from the Salamander Limb.

Cold Spring Harb Perspect Biol. 14(6)
Nagano, M., Hu, B., Yokobayashi, S., Yamamura, A., Umemura, F., Coradin, M., Ohta, H., Yabuta, Y., Ishikura, Y., Okamoto, I., Ikeda, H., Kawahira, N., Nosaka, Y., Shimizu, S., Kojima, Y., Mizuta, K., Kasahara, T., Imoto, Y., Meehan, K., Stocsits, R., Wutz, G., Hiraoka, Y., Murakawa, Y., Yamamoto, T., Tachibana, K., Peters, JM., Mirny, LA., Garcia, BA., Majewski, J., Saitou, M. (2022)

Nucleome programming is required for the foundation of totipotency in mammalian germline development.

EMBO J. :e110600
Neumayr, C., Haberle, V., Serebreni, L., Karner, K., Hendy, O., Boija, A., Henninger, JE., Li, CH., Stejskal, K., Lin, G., Bergauer, K., Pagani, M., Rath, M., Mechtler, K., Arnold, CD., Stark, A. (2022)

Differential cofactor dependencies define distinct types of human enhancers.

Nature. 606(7913):406-413
Nowoshilow, S., Fei, JF., Voss, SR., Tanaka, EM., Murawala, P. (2022)

Gene and transgenics nomenclature for the laboratory axolotl-Ambystoma mexicanum.

Dev Dyn. 251(6):913-921
Ihara, M., Yamamoto, Y., Hattori, Y., Liu, W., Kobayashi, H., Ishiyama, H., Yoshimoto, T., Miyawaki, S., Clausen, T., Bang, OY., Steinberg, GK., Tournier-Lasserve, E., Koizumi, A. (2022)

Moyamoya disease: diagnosis and interventions.

Lancet Neurol.
Kandolf, S., Grishkovskaya, I., Belačić, K., Bolhuis, DL., Amann, S., Foster, B., Imre, R., Mechtler, K., Schleiffer, A., Tagare, HD., Zhong, ED., Meinhart, A., Brown, NG., Haselbach, D. (2022)

Cryo-EM structure of the plant 26S proteasome.

Plant Commun. 3(3):100310
de Almeida, BP., Reiter, F., Pagani, M., Stark, A. (2022)

DeepSTARR predicts enhancer activity from DNA sequence and enables the de novo design of synthetic enhancers.

Nat Genet. 54(5):613-624
Dequeker, BJH., Scherr, MJ., Brandão, HB., Gassler, J., Powell, S., Gaspar, I., Flyamer, IM., Lalic, A., Tang, W., Stocsits, R., Davidson, IF., Peters, JM., Duderstadt, KE., Mirny, LA., Tachibana, K. (2022)

MCM complexes are barriers that restrict cohesin-mediated loop extrusion.

Nature.
Cable, J., Weber-Ban, E., Clausen, T., Walters, KJ., Sharon, M., Finley, DJ., Gu, Y., Hanna, J., Feng, Y., Martens, S., Simonsen, A., Hansen, M., Zhang, H., Goodwin, JM., Reggio, A., Chang, C., Ge, L., Schulman, BA., Deshaies, RJ., Dikic, I., Harper, JW., Wertz, IE., Thomä, NH., Słabicki, M., Frydman, J., Jakob, U., David, DC., Bennett, EJ., Bertozzi, CR., Sardana, R., Eapen, VV., Carra, S. (2022)

Targeted protein degradation: from small molecules to complex organelles-a Keystone Symposia report.

Ann N Y Acad Sci. 1510(1):79-99
Hawkins, PME., Hoi, DM., Cheung, CY., Wang, T., Quan, D., Sasi, VM., Liu, DY., Linington, RG., Jackson, CJ., Oehlers, SH., Cook, GM., Britton, WJ., Clausen, T., Payne, RJ. (2022)

Potent Bactericidal Antimycobacterials Targeting the Chaperone ClpC1 Based on the Depsipeptide Natural Products Ecumicin and Ohmyungsamycin A.

J Med Chem. 65(6):4893-4908
Rey, J., Breiden, M., Lux, V., Bluemke, A., Steindel, M., Ripkens, K., Möllers, B., Bravo Rodriguez, K., Boisguerin, P., Volkmer, R., Mieres-Perez, J., Clausen, T., Sanchez-Garcia, E., Ehrmann, M. (2022)

An allosteric HTRA1-calpain 2 complex with restricted activation profile.

Proc Natl Acad Sci U S A. 119(14):e2113520119
Panarotto, M., Davidson, IF., Litos, G., Schleiffer, A., Peters, JM. (2022)

Cornelia de Lange syndrome mutations in NIPBL can impair cohesin-mediated DNA loop extrusion.

Proc Natl Acad Sci U S A. 119(18):e2201029119
Echeverri, K., Fei, J., Tanaka, EM. (2022)

The Axolotl's journey to the modern molecular era.

Curr Top Dev Biol. 147:631-658
Huth, M., Santini, L., Galimberti, E., Ramesmayer, J., Titz-Teixeira, F., Sehlke, R., Oberhuemer, M., Stummer, S., Herzog, V., Garmhausen, M., Romeike, M., Chugunova, A., Leesch, F., Holcik, L., Weipoltshammer, K., Lackner, A., Schoefer, C., von Haeseler, A., Buecker, C., Pauli, A., Ameres, SL., Smith, A., Beyer, A., Leeb, M. (2022)

NMD is required for timely cell fate transitions by fine-tuning gene expression and regulating translation.

Show Preprint Genes Dev. 36(5-6):348-367
Kellner, MJ., Ross, JJ., Schnabl, J., Dekens, MPS., Matl, M., Heinen, R., Grishkovskaya, I., Bauer, B., Stadlmann, J., Menéndez-Arias, L., Straw, AD., Fritsche-Polanz, R., Traugott, M., Seitz, T., Zoufaly, A., Födinger, M., Wenisch, C., Zuber, J., Pauli, A., Brennecke, J. (2022)

A Rapid, Highly Sensitive and Open-Access SARS-CoV-2 Detection Assay for Laboratory and Home Testing.

Show Preprint Front Mol Biosci. 9:801309
Jobbins, AM., Haberman, N., Artigas, N., Amourda, C., Paterson, HAB., Yu, S., Blackford, SJI., Montoya, A., Dore, M., Wang, YF., Sardini, A., Cebola, I., Zuber, J., Rashid, ST., Lenhard, B., Vernia, S. (2022)

Dysregulated RNA polyadenylation contributes to metabolic impairment in non-alcoholic fatty liver disease.

Nucleic Acids Res. 50(6):3379-3393
Oliveira, CR., Knapp, D., Elewa, A., Gerber, T., Gonzalez Malagon, SG., Gates, PB., Walters, HE., Petzold, A., Arce, H., Cordoba, RC., Subramanian, E., Chara, O., Tanaka, EM., Simon, A., Yun, MH. (2022)

Tig1 regulates proximo-distal identity during salamander limb regeneration.

Nat Commun. 13(1):1141
Noda, T., Blaha, A., Fujihara, Y., Gert, KR., Emori, C., Deneke, VE., Oura, S., Panser, K., Lu, Y., Berent, S., Kodani, M., Cabrera-Quio, LE., Pauli, A., Ikawa, M. (2022)

Sperm membrane proteins DCST1 and DCST2 are required for sperm-egg interaction in mice and fish.

Show Preprint Commun Biol. 5(1):332
Jurado, S., Fedl, AS., Jaritz, M., Kostanova-Poliakova, D., Malin, SG., Mullighan, CG., Strehl, S., Fischer, M., Busslinger, M. (2022)

The PAX5-JAK2 translocation acts as dual-hit mutation that promotes aggressive B-cell leukemia via nuclear STAT5 activation.

EMBO J. 41(7):e108397
Platanitis, E., Gruener, S., Ravi Sundar Jose Geetha, A., Boccuni, L., Vogt, A., Novatchkova, M., Sommer, A., Barozzi, I., Müller, M., Decker, T. (2022)

Interferons reshape the 3D conformation and accessibility of macrophage chromatin.

iScience. 25(3):103840
Andreev, VI., Yu, C., Wang, J., Schnabl, J., Tirian, L., Gehre, M., Handler, D., Duchek, P., Novatchkova, M., Baumgartner, L., Meixner, K., Sienski, G., Patel, DJ., Brennecke, J. (2022)

Panoramix SUMOylation on chromatin connects the piRNA pathway to the cellular heterochromatin machinery.

Nat Struct Mol Biol. 29(2):130-142
Nemčko, F., Stark, A. (2022)

Proteome-scale identification of transcriptional activators in human cells.

Mol Cell. 82(3):497-499
Zhong, Y., Walker, SK., Pritykin, Y., Leslie, CS., Rudensky, AY., van der Veeken, J. (2022)

Hierarchical regulation of the resting and activated T cell epigenome by major transcription factor families.

Nat Immunol. 23(1):122-134
Rauschmeier, R., Reinhardt, A., Gustafsson, C., Glaros, V., Artemov, AV., Dunst, J., Taneja, R., Adameyko, I., Månsson, R., Busslinger, M., Kreslavsky, T. (2022)

Bhlhe40 function in activated B and TFH cells restrains the GC reaction and prevents lymphomagenesis.

J Exp Med. 219(2)
Eichmüller, OL., Corsini, NS., Vértesy, Á., Morassut, I., Scholl, T., Gruber, VE., Peer, AM., Chu, J., Novatchkova, M., Hainfellner, JA., Paredes, MF., Feucht, M., Knoblich, JA. (2022)

Amplification of human interneuron progenitors promotes brain tumors and neurological defects.

Science. 375(6579):eabf5546
Binner, MI., Kogan, A., Panser, K., Schleiffer, A., Deneke, VE., Pauli, A. (2022)

The Sperm Protein Spaca6 is Essential for Fertilization in Zebrafish.

Show Preprint Front Cell Dev Biol. 9:806982
Pre-print Schoeberl, U. E., Fitz, J., Froussios, K., Valieris, R., Makharova, M., Ourailidis, I., Bauer, B., Neumann, T., Wiedemann, E., Steininger, M., Garcia, A. C., Mastrovito, M., Mouquet, H., Tojal Da Silva, I., Pavri, R. (2022)

Somatic hypermutation spectra are independent of the local transcriptional and epigenetic landscape

bioRxiv. 2022.05.21.492925
Zopf, LM., Heimel, P., Geyer, SH., Kavirayani, A., Reier, S., Fröhlich, V., Stiglbauer-Tscholakoff, A., Chen, Z., Nics, L., Zinnanti, J., Drexler, W., Mitterhauser, M., Helbich, T., Weninger, WJ., Slezak, P., Obenauf, A., Bühler, K., Walter, A. (2021)

Cross-Modality Imaging of Murine Tumor Vasculature-a Feasibility Study.

Mol Imaging Biol. 23(6):874-893
Haas, L., Elewaut, A., Gerard, CL., Umkehrer, C., Leiendecker, L., Pedersen, M., Krecioch, I., Hoffmann, D., Novatchkova, M., Kuttke, M., Neumann, T., da Silva, IP., Witthock, H., Cuendet, MA., Carotta, S., Harrington, KJ., Zuber, J., Scolyer, RA., Long, GV., Wilmott, JS., Michielin, O., Vanharanta, S., Wiesner, T., Obenauf, AC. (2021)

Acquired resistance to anti-MAPK targeted therapy confers an immune-evasive tumor microenvironment and cross-resistance to immunotherapy in melanoma.

Nat Cancer. 2(7):693-708
Ctortecka, C., Stejskal, K., Krššáková, G., Mendjan, S., Mechtler, K. (2021)

Quantitative Accuracy and Precision in Multiplexed Single-Cell Proteomics.

Anal Chem.
Kagawa, H., Javali, A., Khoei, HH., Sommer, TM., Sestini, G., Novatchkova, M., Scholte Op Reimer, Y., Castel, G., Bruneau, A., Maenhoudt, N., Lammers, J., Loubersac, S., Freour, T., Vankelecom, H., David, L., Rivron, N. (2021)

Human blastoids model blastocyst development and implantation.

Nature.
Appel, LM., Franke, V., Bruno, M., Grishkovskaya, I., Kasiliauskaite, A., Kaufmann, T., Schoeberl, UE., Puchinger, MG., Kostrhon, S., Ebenwaldner, C., Sebesta, M., Beltzung, E., Mechtler, K., Lin, G., Vlasova, A., Leeb, M., Pavri, R., Stark, A., Akalin, A., Stefl, R., Bernecky, C., Djinovic-Carugo, K., Slade, D. (2021)

PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC.

Nat Commun. 12(1):6078
Dorfer, V., Strobl, M., Winkler, S., Mechtler, K. (2021)

MS Amanda 2.0: Advancements in the standalone implementation.

Rapid Commun Mass Spectrom. 35(11):e9088
Leiendecker, L., Jung, PS., Obenauf, AC. (2021)

Targeting CD56 with an antibody-drug conjugate in Merkel cell carcinoma.

Br J Dermatol.
de Almeida, M., Hinterndorfer, M., Brunner, H., Grishkovskaya, I., Singh, K., Schleiffer, A., Jude, J., Deswal, S., Kalis, R., Vunjak, M., Lendl, T., Imre, R., Roitinger, E., Neumann, T., Kandolf, S., Schutzbier, M., Mechtler, K., Versteeg, GA., Haselbach, D., Zuber, J. (2021)

AKIRIN2 controls the nuclear import of proteasomes in vertebrates.

Nature. 599(7885):491-496
Ctortecka, C., Krššáková, G., Stejskal, K., Penninger, JM., Mendjan, S., Mechtler, K., Stadlmann, J. (2021)

Comparative proteome signatures of trace samples by multiplexed Data-Independent Acquisition.

Mol Cell Proteomics. :100177
Diesch, J., Le Pannérer, MM., Winkler, R., Casquero, R., Muhar, M., van der Garde, M., Maher, M., Herráez, CM., Bech-Serra, JJ., Fellner, M., Rathert, P., Brooks, N., Zamora, L., Gentilella, A., de la Torre, C., Zuber, J., Götze, KS., Buschbeck, M. (2021)

Inhibition of CBP synergizes with the RNA-dependent mechanisms of Azacitidine by limiting protein synthesis.

Nat Commun. 12(1):6060
Kheiroddin, P., Schöberl, P., Althammer, M., Cibali, E., Würfel, T., Wein, H., Kulawik, B., Buntrock-Döpke, H., Weigl, E., Gran, S., Gründl, M., Langguth, J., Lampl, B., Judex, G., Niggel, J., Pagel, P., Schratzenstaller, T., Schneider-Brachert, W., Gastiger, S., Bodenschatz, M., Konrad, M., Levchuk, A., Roth, C., Schöner, D., Schneebauer, F., Rohrmanstorfer, R., Dekens, MP., Brandstetter, S., Zuber, J., Wallerstorfer, D., Burkovski, A., Ambrosch, A., Wagner, T., Kabesch, M. (2021)

Results of WICOVIR Gargle Pool PCR Testing in German Schools Based on the First 100,000 Tests.

Front Pediatr. 9:721518
Bassat, E., Tanaka, EM. (2021)

The cellular and signaling dynamics of salamander limb regeneration.

Curr Opin Cell Biol. 73:117-123
Bauer, BW., Davidson, IF., Canena, D., Wutz, G., Tang, W., Litos, G., Horn, S., Hinterdorfer, P., Peters, JM. (2021)

Cohesin mediates DNA loop extrusion by a "swing and clamp" mechanism.

Cell. 184(21):5448-5464.e22
Smeenk, L., Ottema, S., Mulet-Lazaro, R., Ebert, A., Havermans, M., Varea, AA., Fellner, M., Pastoors, D., van Herk, S., Erpelinck-Verschueren, C., Grob, T., Hoogenboezem, RM., Kavelaars, FG., Matson, DR., Bresnick, EH., Bindels, EM., Kentsis, A., Zuber, J., Delwel, R. (2021)

Selective Requirement of MYB for Oncogenic Hyperactivation of a Translocated Enhancer in Leukemia.

Cancer Discov. 11(11):2868-2883
Pre-print Guo,Y., Gert,KR., Lebedeva,S., Potok,ME., Wike,CL., Grow,EJ., Ketting,RF., Pauli,A., Cairns,B. (2021)

Maternally-inherited anti-sense piRNAs antagonize transposon expression in teleost embryos

bioRxiv. 2021.11.03.467172
Pre-print Gert,KR., Cabrera Quio,LE., Novatchkova,M., Guo,Y., Cairns,BR., Pauli,A. (2021)

Reciprocal zebrafish-medaka hybrids reveal maternal control of zygotic genome activation timing

bioRxiv. 2021.11.03.467109
Zopf, LM., Heimel, P., Geyer, SH., Kavirayani, A., Reier, S., Fröhlich, V., Stiglbauer-Tscholakoff, A., Chen, Z., Nics, L., Zinnanti, J., Drexler, W., Mitterhauser, M., Helbich, T., Weninger, WJ., Slezak, P., Obenauf, A., Bühler, K., Walter, A. (2021)

Correction to: Cross-Modality Imaging of Murine Tumor Vasculature-a Feasibility Study.

Mol Imaging Biol. 23(6):894
Rodriguez Carvajal, A., Grishkovskaya, I., Gomez Diaz, C., Vogel, A., Sonn-Segev, A., Kushwah, MS., Schodl, K., Deszcz, L., Orban-Nemeth, Z., Sakamoto, S., Mechtler, K., Kukura, P., Clausen, T., Haselbach, D., Ikeda, F. (2021)

The linear ubiquitin chain assembly complex (LUBAC) generates heterotypic ubiquitin chains.

Show Preprint Elife. 10
Gutiérrez-Pérez, P., Santillán, EM., Lendl, T., Wang, J., Schrempf, A., Steinacker, TL., Asparuhova, M., Brandstetter, M., Haselbach, D., Cochella, L. (2021)

miR-1 sustains muscle physiology by controlling V-ATPase complex assembly.

Sci Adv. 7(42):eabh1434
Böhm, M., Killinger, K., Dudziak, A., Pant, P., Jänen, K., Hohoff, S., Mechtler, K., Örd, M., Loog, M., Sanchez-Garcia, E., Westermann, S. (2021)

Cdc4 phospho-degrons allow differential regulation of Ame1CENP-U protein stability across the cell cycle.

Elife. 10
van der Kouwe, E., Heller, G., Czibere, A., Pulikkan, JA., Agreiter, C., Castilla, LH., Delwel, R., Di Ruscio, A., Ebralidze, AK., Forte, M., Grebien, F., Heyes, E., Kazianka, L., Klinger, J., Kornauth, C., Le, T., Lind, K., Barbosa, IAM., Pemovska, T., Pichler, A., Schmolke, AS., Schweicker, CM., Sill, H., Sperr, WR., Spittler, A., Surapally, S., Trinh, BQ., Valent, P., Vanura, K., Welner, RS., Zuber, J., Tenen, DG., Staber, PB. (2021)

Core-binding factor leukemia hijacks the T-cell-prone PU.1 antisense promoter.

Blood. 138(15):1345-1358
Balay, SD., Hochstoeger, T., Vilceanu, A., Malkemper, EP., Snider, W., Dürnberger, G., Mechtler, K., Schuechner, S., Ogris, E., Nordmann, GC., Ushakova, L., Nimpf, S., Keays, DA. (2021)

The expression, localisation and interactome of pigeon CRY2.

Sci Rep. 11(1):20293
Fujihara, Y., Herberg, S., Blaha, A., Panser, K., Kobayashi, K., Larasati, T., Novatchkova, M., Theussl, HC., Olszanska, O., Ikawa, M., Pauli, A. (2021)

The conserved fertility factor SPACA4/Bouncer has divergent modes of action in vertebrate fertilization.

Show Preprint Proc Natl Acad Sci U S A. 118(39)
Schimpf, J., Oppermann, S., Gerasimova, T., Santos Seica, AF., Hellwig, P., Grishkovskaya, I., Wohlwend, D., Haselbach, D., Friedrich, T. (2021)

Structure of the peripheral arm of a minimalistic respiratory complex I.

Structure.
Willeit, P., Krause, R., Lamprecht, B., Berghold, A., Hanson, B., Stelzl, E., Stoiber, H., Zuber, J., Heinen, R., Köhler, A., Bernhard, D., Borena, W., Doppler, C., von Laer, D., Schmidt, H., Pröll, J., Steinmetz, I., Wagner, M. (2021)

Prevalence of RT-qPCR-detected SARS-CoV-2 infection at schools: First results from the Austrian School-SARS-CoV-2 prospective cohort study.

Lancet Reg Health Eur. 5:100086
Waidmann, S., Petutschnig, E., Rozhon, W., Molnár, G., Popova, O., Mechtler, K., Jonak, C. (2021)

GSK3-mediated phosphorylation of DEK3 regulates chromatin accessibility and stress tolerance in Arabidopsis.

FEBS J.
Hajdusits, B., Suskiewicz, MJ., Hundt, N., Meinhart, A., Kurzbauer, R., Leodolter, J., Kukura, P., Clausen, T. (2021)

McsB forms a gated kinase chamber to mark aberrant bacterial proteins for degradation.

Show Preprint Elife. 10
Willeit, P., Bernar, B., Zurl, C., Al-Rawi, M., Berghold, A., Bernhard, D., Borena, W., Doppler, C., Kerbl, R., Köhler, A., Krause, R., Lamprecht, B., Pröll, J., Schmidt, H., Steinmetz, I., Stelzl, E., Stoiber, H., von Laer, D., Zuber, J., Müller, T., Strenger, V., Wagner, M. (2021)

Sensitivity and specificity of the antigen-based anterior nasal self-testing programme for detecting SARS-CoV-2 infection in schools, Austria, March 2021.

Euro Surveill. 26(34)
Alexander, RG., Mintz, RJ., Custodio, PJ., Macknik, SL., Vaziri, A., Venkatakrishnan, A., Gindina, S., Martinez-Conde, S. (2021)

Gaze mechanisms enabling the detection of faint stars in the night sky.

Eur J Neurosci. 54(4):5357-5367
Peters, JM. (2021)

How DNA loop extrusion mediated by cohesin enables V(D)J recombination.

Curr Opin Cell Biol. 70:75-83
Glaros, V., Rauschmeier, R., Artemov, AV., Reinhardt, A., Ols, S., Emmanouilidi, A., Gustafsson, C., You, Y., Mirabello, C., Björklund, ÅK., Perez, L., King, NP., Månsson, R., Angeletti, D., Loré, K., Adameyko, I., Busslinger, M., Kreslavsky, T. (2021)

Limited access to antigen drives generation of early B cell memory while restraining the plasmablast response.

Immunity. 54(9):2005-2023.e10
Hornbachner, R., Lackner, A., Papuchova, H., Haider, S., Knöfler, M., Mechtler, K., Latos, PA. (2021)

MSX2 safeguards syncytiotrophoblast fate of human trophoblast stem cells.

Proc Natl Acad Sci U S A. 118(37)
Ketting, RF., Cochella, L. (2021)

Concepts and functions of small RNA pathways in C. elegans.

Curr Top Dev Biol. 144:45-89
Hoffmann, D., Mereiter, S., Jin Oh, Y., Monteil, V., Elder, E., Zhu, R., Canena, D., Hain, L., Laurent, E., Grünwald-Gruber, C., Klausberger, M., Jonsson, G., Kellner, MJ., Novatchkova, M., Ticevic, M., Chabloz, A., Wirnsberger, G., Hagelkruys, A., Altmann, F., Mach, L., Stadlmann, J., Oostenbrink, C., Mirazimi, A., Hinterdorfer, P., Penninger, JM. (2021)

Identification of lectin receptors for conserved SARS-CoV-2 glycosylation sites.

EMBO J. :e108375
Wank, I., Pliota, P., Badurek, S., Kraitsy, K., Kaczanowska, J., Griessner, J., Kreitz, S., Hess, A., Haubensak, W. (2021)

Central amygdala circuitry modulates nociceptive processing through differential hierarchical interaction with affective network dynamics.

Commun Biol. 4(1):732
Krenn, V., Bosone, C., Burkard, TR., Spanier, J., Kalinke, U., Calistri, A., Salata, C., Rilo Christoff, R., Pestana Garcez, P., Mirazimi, A., Knoblich, JA. (2021)

Organoid modeling of Zika and herpes simplex virus 1 infections reveals virus-specific responses leading to microcephaly.

Cell Stem Cell. 28(8):1362-1379.e7
Bauer, TL., Collmar, K., Kaltofen, T., Loeffler, AK., Decker, L., Mueller, J., Pinter, S., Eisler, SA., Mahner, S., Fraungruber, P., Kommoss, S., Staebler, A., Francis, L., Conlan, RS., Zuber, J., Jeschke, U., Trillsch, F., Rathert, P. (2021)

Functional Analysis of Non-Genetic Resistance to Platinum in Epithelial Ovarian Cancer Reveals a Role for the MBD3-NuRD Complex in Resistance Development.

Cancers (Basel). 13(15)
Grabarczyk, DB., Petrova, OA., Deszcz, L., Kurzbauer, R., Murphy, P., Ahel, J., Vogel, A., Gogova, R., Faas, V., Kordic, D., Schleiffer, A., Meinhart, A., Imre, R., Lehner, A., Neuhold, J., Bader, G., Stolt-Bergner, P., Böttcher, J., Wolkerstorfer, B., Fischer, G., Grishkovskaya, I., Haselbach, D., Kessler, D., Clausen, T. (2021)

HUWE1 employs a giant substrate-binding ring to feed and regulate its HECT E3 domain.

Nat Chem Biol.
Poss, KD., Tanaka, EM. (2021)

A new society for regenerative biologists.

Development. 148(3)
Velkova, M., Silva, N., Dello Stritto, MR., Schleiffer, A., Barraud, P., Hartl, M., Jantsch, V. (2021)

Caenorhabditis elegans RMI2 functional homolog-2 (RMIF-2) and RMI1 (RMH-1) have both overlapping and distinct meiotic functions within the BTR complex.

PLoS Genet. 17(7):e1009663
Deneke, VE., Pauli, A. (2021)

The Fertilization Enigma: How Sperm and Egg Fuse.

Annu Rev Cell Dev Biol.
Stejskal, K., Op de Beeck, J., Dürnberger, G., Jacobs, P., Mechtler, K. (2021)

Ultrasensitive NanoLC-MS of Subnanogram Protein Samples Using Second Generation Micropillar Array LC Technology with Orbitrap Exploris 480 and FAIMS PRO.

Anal Chem. 93(25):8704-8710
Asanović, I., Strandback, E., Kroupova, A., Pasajlic, D., Meinhart, A., Tsung-Pin, P., Djokovic, N., Anrather, D., Schuetz, T., Suskiewicz, MJ., Sillamaa, S., Köcher, T., Beveridge, R., Nikolic, K., Schleiffer, A., Jinek, M., Hartl, M., Clausen, T., Penninger, J., Macheroux, P., Weitzer, S., Martinez, J. (2021)

The oxidoreductase PYROXD1 uses NAD(P)+ as an antioxidant to sustain tRNA ligase activity in pre-tRNA splicing and unfolded protein response.

Mol Cell. 81(12):2520-2532.e16
Haas L, Elewaut A, Gerard CL, Umkehrer C, Pedersen M, Leiendecker L, Krecioch I, Hoffmann D, Novatchkova M, Kuttke M, Neumann T, Pires de Silva I, Witthock H, Cuendet MA, Carotta S, Harrington KJ, Zuber J, Scolyer RA, Long GV, Wilmott JS, Michielin O, Vanharanta S, Wiesner T, Obenauf AC. (2021)

Acquired resistance to anti-MAPK targeted therapy confers an immune-evasive tumor microenvironment and cross-resistance to immunotherapy in melanoma

Nature Cancer. 2:693–708
Breitenecker, K., Homolya, M., Luca, AC., Lang, V., Trenk, C., Petroczi, G., Mohrherr, J., Horvath, J., Moritsch, S., Haas, L., Kurnaeva, M., Eferl, R., Stoiber, D., Moriggl, R., Bilban, M., Obenauf, AC., Ferran, C., Dome, B., Laszlo, V., Győrffy, B., Dezso, K., Moldvay, J., Casanova, E., Moll, HP. (2021)

Down-regulation of A20 promotes immune escape of lung adenocarcinomas.

Sci Transl Med. 13(601)
Masselink, W., Tanaka, EM. (2021)

Toward whole tissue imaging of axolotl regeneration.

Dev Dyn. 250(6):800-806
Bhat, P., Burkard, TR., Herzog, VA., Pauli, A., Ameres, SL. (2021)

Systematic refinement of gene annotations by parsing mRNA 3' end sequencing datasets.

Methods Enzymol. 655:205-223
Chiva, C., Mendes Maia, T., Panse, C., Stejskal, K., Douché, T., Matondo, M., Loew, D., Helm, D., Rettel, M., Mechtler, K., Impens, F., Nanni, P., Shevchenko, A., Sabidó, E. (2021)

Quality standards in proteomics research facilities: Common standards and quality procedures are essential for proteomics facilities and their users.

EMBO Rep. 22(6):e52626
Lindner, B., Martin, E., Steininger, M., Bundalo, A., Lenter, M., Zuber, J., Schuler, M. (2021)

A genome-wide CRISPR/Cas9 screen to identify phagocytosis modulators in monocytic THP-1 cells.

Sci Rep. 11(1):12973
Davidson, IF., Peters, JM. (2021)

Genome folding through loop extrusion by SMC complexes.

Nat Rev Mol Cell Biol. 22(7):445-464
Calderón, L., Schindler, K., Malin, SG., Schebesta, A., Sun, Q., Schwickert, T., Alberti, C., Fischer, M., Jaritz, M., Tagoh, H., Ebert, A., Minnich, M., Liston, A., Cochella, L., Busslinger, M. (2021)

Pax5 regulates B cell immunity by promoting PI3K signaling via PTEN down-regulation.

Sci Immunol. 6(61)
Prattes, M., Grishkovskaya, I., Hodirnau, VV., Rössler, I., Klein, I., Hetzmannseder, C., Zisser, G., Gruber, CC., Gruber, K., Haselbach, D., Bergler, H. (2021)

Structural basis for inhibition of the AAA-ATPase Drg1 by diazaborine.

Nat Commun. 12(1):3483
Cabrera-Quio, LE., Schleiffer, A., Mechtler, K., Pauli, A. (2021)

Zebrafish Ski7 tunes RNA levels during the oocyte-to-embryo transition.

PLoS Genet. 17(2):e1009390
Cura Costa, E., Otsuki, L., Rodrigo Albors, A., Tanaka, EM., Chara, O. (2021)

Spatiotemporal control of cell cycle acceleration during axolotl spinal cord regeneration.

Elife. 10
Pirklbauer, GJ., Stieger, CE., Matzinger, M., Winkler, S., Mechtler, K., Dorfer, V. (2021)

MS Annika: A New Cross-Linking Search Engine.

J Proteome Res. 20(5):2560-2569
Hofbauer, P., Jahnel, SM., Papai, N., Giesshammer, M., Deyett, A., Schmidt, C., Penc, M., Tavernini, K., Grdseloff, N., Meledeth, C., Ginistrelli, LC., Ctortecka, C., Šalic, Š., Novatchkova, M., Mendjan, S. (2021)

Cardioids reveal self-organizing principles of human cardiogenesis.

Cell. 184(12):3299-3317.e22
Yelagandula, R., Bykov, A., Vogt, A., Heinen, R., Özkan, E., Strobl, MM., Baar, JC., Uzunova, K., Hajdusits, B., Kordic, D., Suljic, E., Kurtovic-Kozaric, A., Izetbegovic, S., Schaeffer, J., Hufnagl, P., Zoufaly, A., Seitz, T., Födinger, M., Allerberger, F., Stark, A., Cochella, L., Elling, U. (2021)

Multiplexed detection of SARS-CoV-2 and other respiratory infections in high throughput by SARSeq.

Nat Commun. 12(1):3132
Winter, N., Novatchkova, M., Bachmair, A. (2021)

Cellular Control of Protein Turnover via the Modification of the Amino Terminus.

Int J Mol Sci. 22(7)
Pre-print Peycheva,M., Neumann, T., Malzl, D., Nazarova, M., Schoeberl, U., and Pavri, R. (2021)

DNA replication timing directly regulates the frequency of oncogenic chromosomal translocations

bioRxiv. 2021.05.29.446276
Pinter, S., Knodel, F., Choudalakis, M., Schnee, P., Kroll, C., Fuchs, M., Broehm, A., Weirich, S., Roth, M., Eisler, SA., Zuber, J., Jeltsch, A., Rathert, P. (2021)

A functional LSD1 coregulator screen reveals a novel transcriptional regulatory cascade connecting R-loop homeostasis with epigenetic regulation.

Nucleic Acids Res. 49(8):4350-4370
Fali, T., Aychek, T., Ferhat, M., Jouzeau, JY., Busslinger, M., Moulin, D., Eberl, G. (2021)

Metabolic regulation by PPARγ is required for IL-33-mediated activation of ILC2s in lung and adipose tissue.

Mucosal Immunol. 14(3):585-593
Peter, M., Aschauer, DF., Rose, R., Sinning, A., Grössl, F., Kargl, D., Kraitsy, K., Burkard, TR., Luhmann, HJ., Haubensak, W., Rumpel, S. (2021)

Rapid nucleus-scale reorganization of chromatin in neurons enables transcriptional adaptation for memory consolidation.

PLoS One. 16(5):e0244038
Griessner, J., Pasieka, M., Böhm, V., Grössl, F., Kaczanowska, J., Pliota, P., Kargl, D., Werner, B., Kaouane, N., Strobelt, S., Kreitz, S., Hess, A., Haubensak, W. (2021)

Central amygdala circuit dynamics underlying the benzodiazepine anxiolytic effect.

Mol Psychiatry. 26(2):534-544
Pre-print Ahel J, Fletcher A, Grabarczyk DB, Roitinger E, Deszcz L, Lehner A, Virdee S, Clausen T. (2021)

E3 ubiquitin ligase RNF213 employs a non-canonical zinc finger active site and is allosterically regulated by ATP

bioRxiv. 2021.05.10.443411
Lin, TY., Gerber, T., Taniguchi-Sugiura, Y., Murawala, P., Hermann, S., Grosser, L., Shibata, E., Treutlein, B., Tanaka, EM. (2021)

Fibroblast dedifferentiation as a determinant of successful regeneration.

Dev Cell. 56(10):1541-1551.e6
Pre-print Beckwith, K.S., Ødegård-Fougner, Ø., Morero, N.R., Barton, C., Schueder, F., Tang, W., Alexander, S., Peters, J.-M., Jungmann, R., Birney, E., Ellenberg J. (2021)

Visualization of loop extrusion by DNA nanoscale tracing in single human cells

bioRxiv. 2021.04.12.439407
Miletic, S., Fahrenkamp, D., Goessweiner-Mohr, N., Wald, J., Pantel, M., Vesper, O., Kotov, V., Marlovits, TC. (2021)

Substrate-engaged type III secretion system structures reveal gating mechanism for unfolded protein translocation.

Nat Commun. 12(1):1546
Schnabl, J., Wang, J., Hohmann, U., Gehre, M., Batki, J., Andreev, VI., Purkhauser, K., Fasching, N., Duchek, P., Novatchkova, M., Mechtler, K., Plaschka, C., Patel, DJ., Brennecke, J. (2021)

Molecular principles of Piwi-mediated cotranscriptional silencing through the dimeric SFiNX complex.

Genes Dev. 35(5-6):392-409
Schloissnig, S., Kawaguchi, A., Nowoshilow, S., Falcon, F., Otsuki, L., Tardivo, P., Timoshevskaya, N., Keinath, MC., Smith, JJ., Voss, SR., Tanaka, EM. (2021)

The giant axolotl genome uncovers the evolution, scaling, and transcriptional control of complex gene loci.

Proc Natl Acad Sci U S A. 118(15)
Meyer, A., Schloissnig, S., Franchini, P., Du, K., Woltering, JM., Irisarri, I., Wong, WY., Nowoshilow, S., Kneitz, S., Kawaguchi, A., Fabrizius, A., Xiong, P., Dechaud, C., Spaink, HP., Volff, JN., Simakov, O., Burmester, T., Tanaka, EM., Schartl, M. (2021)

Giant lungfish genome elucidates the conquest of land by vertebrates.

Nature. 590(7845):284-289
Umkehrer, C., Holstein, F., Formenti, L., Jude, J., Froussios, K., Neumann, T., Cronin, SM., Haas, L., Lipp, JJ., Burkard, TR., Fellner, M., Wiesner, T., Zuber, J., Obenauf, AC. (2021)

Isolating live cell clones from barcoded populations using CRISPRa-inducible reporters.

Nat Biotechnol. 39(2):174-178
Valent, P., Orfao, A., Kubicek, S., Staber, P., Haferlach, T., Deininger, M., Kollmann, K., Lion, T., Virgolini, I., Winter, G., Hantschel, O., Kenner, L., Zuber, J., Grebien, F., Moriggl, R., Hoermann, G., Hermine, O., Andreeff, M., Bock, C., Mughal, T., Constantinescu, SN., Kralovics, R., Sexl, V., Skoda, R., Superti-Furga, G., Jäger, U. (2021)

Precision Medicine in Hematology 2021: Definitions, Tools, Perspectives, and Open Questions.

Hemasphere. 5(3):e536
Endres, T., Solvie, D., Heidelberger, JB., Andrioletti, V., Baluapuri, A., Ade, CP., Muhar, M., Eilers, U., Vos, SM., Cramer, P., Zuber, J., Beli, P., Popov, N., Wolf, E., Gallant, P., Eilers, M. (2021)

Ubiquitylation of MYC couples transcription elongation with double-strand break repair at active promoters.

Mol Cell. 81(4):830-844.e13
Paolino, M., Koglgruber, R., Cronin, SJF., Uribesalgo, I., Rauscher, E., Harreiter, J., Schuster, M., Bancher-Todesca, D., Pranjic, B., Novatchkova, M., Fededa, JP., White, AJ., Sigl, V., Dekan, S., Penz, T., Bock, C., Kenner, L., Holländer, GA., Anderson, G., Kautzky-Willer, A., Penninger, JM. (2021)

RANK links thymic regulatory T cells to fetal loss and gestational diabetes in pregnancy.

Nature. 589(7842):442-447
Pre-print Kellner MJ, Matl M, Ross JJ, Schnabl J, Handler D, Heinen R, Schaeffer J, Hufnagl P, Indra A, Dekens MPS, Fritsche-Polanz R, Födinger M, Zuber J, Vienna Covid-19 Detection Initiative (VCDI), Allerberger F, Pauli A, Brennecke J (2021)

Head-to-head comparison of direct-input RT-PCR and RT-LAMP against RT-qPCR on extracted RNA for rapid SARS-CoV-2 diagnostics.

medRxiv. 2021.01.19.21250079
Lehmann, R., Peters, JM. (2021)

Angelika Amon (1967-2020).

Cell. 184(1):10-14
Hagelkruys, A., Wirnsberger, G., Stadlmann, J., Wöhner, M., Horrer, M., Vilagos, B., Jonsson, G., Kogler, M., Tortola, L., Novatchkova, M., Bönelt, P., Hoffmann, D., Koglgruber, R., Steffen, U., Schett, G., Busslinger, M., Bergthaler, A., Klein, C., Penninger, JM. (2021)

A crucial role for Jagunal homolog 1 in humoral immunity and antibody glycosylation in mice and humans.

J Exp Med. 218(1)
Leiendecker, L., Jung, PS., Krecioch, I., Neumann, T., Schleiffer, A., Mechtler, K., Wiesner, T., Obenauf, AC. (2020)

LSD1 inhibition induces differentiation and cell death in Merkel cell carcinoma.

EMBO Mol Med. 12(11):e12525
Cai, SF., Chu, SH., Goldberg, AD., Parvin, S., Koche, RP., Glass, JL., Stein, EM., Tallman, MS., Sen, F., Famulare, CA., Cusan, M., Huang, CH., Chen, CW., Zou, L., Cordner, KB., DelGaudio, NL., Durani, V., Kini, M., Rex, M., Tian, HS., Zuber, J., Baslan, T., Lowe, SW., Rienhoff, HY., Letai, A., Levine, RL., Armstrong, SA. (2020)

Leukemia Cell of Origin Influences Apoptotic Priming and Sensitivity to LSD1 Inhibition.

Cancer Discov. 10(10):1500-1513
van der Lelij, P., Newman, JA., Lieb, S., Jude, J., Katis, V., Hoffmann, T., Hinterndorfer, M., Bader, G., Kraut, N., Pearson, MA., Peters, JM., Zuber, J., Gileadi, O., Petronczki, M. (2020)

STAG1 vulnerabilities for exploiting cohesin synthetic lethality in STAG2-deficient cancers.

Life Sci Alliance. 3(7)
Pende, M., Vadiwala, K., Schmidbaur, H., Stockinger, AW., Murawala, P., Saghafi, S., Dekens, MPS., Becker, K., Revilla-I-Domingo, R., Papadopoulos, SC., Zurl, M., Pasierbek, P., Simakov, O., Tanaka, EM., Raible, F., Dodt, HU. (2020)

A versatile depigmentation, clearing, and labeling method for exploring nervous system diversity.

Sci Adv. 6(22):eaba0365
Fieseler, C., Zimmer, M., Kutz, JN. (2020)

Unsupervised learning of control signals and their encodings in Caenorhabditis elegans whole-brain recordings.

J R Soc Interface. 17(173):20200459
Malkemper, EP., Nimpf, S., Nordmann, GC., Keays, DA. (2020)

Neuronal circuits and the magnetic sense: central questions.

J Exp Biol. 223(Pt 21)
Matzinger, M., Fischhuber, K., Pölöske, D., Mechtler, K., Heiss, EH. (2020)

AMPK leads to phosphorylation of the transcription factor Nrf2, tuning transactivation of selected target genes.

Redox Biol. 29:101393
Matzinger, M., Kandioller, W., Doppler, P., Heiss, EH., Mechtler, K. (2020)

Fast and Highly Efficient Affinity Enrichment of Azide-A-DSBSO Cross-Linked Peptides.

J Proteome Res. 19(5):2071-2079
Dexheimer, PJ., Wang, J., Cochella, L. (2020)

Two MicroRNAs Are Sufficient for Embryonic Patterning in C. elegans.

Curr Biol. 30(24):5058-5065.e5
Klotz-Noack, K., Klinger, B., Rivera, M., Bublitz, N., Uhlitz, F., Riemer, P., Lüthen, M., Sell, T., Kasack, K., Gastl, B., Ispasanie, SSS., Simon, T., Janssen, N., Schwab, M., Zuber, J., Horst, D., Blüthgen, N., Schäfer, R., Morkel, M., Sers, C. (2020)

SFPQ Depletion Is Synthetically Lethal with BRAFV600E in Colorectal Cancer Cells.

Cell Rep. 32(12):108184
Thiecke, MJ., Wutz, G., Muhar, M., Tang, W., Bevan, S., Malysheva, V., Stocsits, R., Neumann, T., Zuber, J., Fraser, P., Schoenfelder, S., Peters, JM., Spivakov, M. (2020)

Cohesin-Dependent and -Independent Mechanisms Mediate Chromosomal Contacts between Promoters and Enhancers.

Cell Rep. 32(3):107929
Nimpf, S., Keays, DA. (2020)

Why (and how) we should publish negative data.

EMBO Rep. 21(1):e49775
Wutz, G., Ladurner, R., St Hilaire, BG., Stocsits, RR., Nagasaka, K., Pignard, B., Sanborn, A., Tang, W., Várnai, C., Ivanov, MP., Schoenfelder, S., van der Lelij, P., Huang, X., Dürnberger, G., Roitinger, E., Mechtler, K., Davidson, IF., Fraser, P., Lieberman-Aiden, E., Peters, JM. (2020)

ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL.

Elife. 9
Fennell, LM., Gomez Diaz, C., Deszcz, L., Kavirayani, A., Hoffmann, D., Yanagitani, K., Schleiffer, A., Mechtler, K., Hagelkruys, A., Penninger, J., Ikeda, F. (2020)

Site-specific ubiquitination of the E3 ligase HOIP regulates apoptosis and immune signaling.

EMBO J. 39(24):e103303
Pühringer, T., Hohmann, U., Fin, L., Pacheco-Fiallos, B., Schellhaas, U., Brennecke, J., Plaschka, C. (2020)

Structure of the human core transcription-export complex reveals a hub for multivalent interactions.

Elife. 9
Gastl, B., Klotz-Noack, K., Klinger, B., Ispasanie, S., Salib, KHF., Zuber, J., Mamlouk, S., Bublitz, N., Blüthgen, N., Horst, D., Morkel, M., Schäfer, R., Sers, C. (2020)

Reduced replication origin licensing selectively kills KRAS-mutant colorectal cancer cells via mitotic catastrophe.

Cell Death Dis. 11(7):499
Kargl, D., Kaczanowska, J., Ulonska, S., Groessl, F., Piszczek, L., Lazovic, J., Buehler, K., Haubensak, W. (2020)

The amygdala instructs insular feedback for affective learning.

Elife. 9
Stephani, M., Picchianti, L., Gajic, A., Beveridge, R., Skarwan, E., Sanchez de Medina Hernandez, V., Mohseni, A., Clavel, M., Zeng, Y., Naumann, C., Matuszkiewicz, M., Turco, E., Loefke, C., Li, B., Dürnberger, G., Schutzbier, M., Chen, HT., Abdrakhmanov, A., Savova, A., Chia, KS., Djamei, A., Schaffner, I., Abel, S., Jiang, L., Mechtler, K., Ikeda, F., Martens, S., Clausen, T., Dagdas, Y. (2020)

A cross-kingdom conserved ER-phagy receptor maintains endoplasmic reticulum homeostasis during stress.

Elife. 9
Carmichael, CL., Wang, J., Nguyen, T., Kolawole, O., Benyoucef, A., De Mazière, C., Milne, AR., Samuel, S., Gillinder, K., Hediyeh-Zadeh, S., Vo, ANQ., Huang, Y., Knezevic, K., McInnes, WRL., Shields, BJ., Mitchell, H., Ritchie, ME., Lammens, T., Lintermans, B., Van Vlierberghe, P., Wong, NC., Haigh, K., Thoms, JAI., Toulmin, E., Curtis, DJ., Oxley, EP., Dickins, RA., Beck, D., Perkins, A., McCormack, MP., Davis, MJ., Berx, G., Zuber, J., Pimanda, JE., Kile, BT., Goossens, S., Haigh, JJ. (2020)

The EMT modulator SNAI1 contributes to AML pathogenesis via its interaction with LSD1.

Blood. 136(8):957-973
Charest, J., Daniele, T., Wang, J., Bykov, A., Mandlbauer, A., Asparuhova, M., Röhsner, J., Gutiérrez-Pérez, P., Cochella, L. (2020)

Combinatorial Action of Temporally Segregated Transcription Factors.

Dev Cell. 55(4):483-499.e7
Liu, GJ., Jaritz, M., Wöhner, M., Agerer, B., Bergthaler, A., Malin, SG., Busslinger, M. (2020)

Repression of the B cell identity factor Pax5 is not required for plasma cell development.

J Exp Med. 217(11)
Landskron, L., Bonnay, F., Burkard, TR., Knoblich, JA. (2020)

DigiTAG-a RNA Sequencing Approach to Analyze Transcriptomes of Rare Cell Populations in Drosophila melanogaster.

Bio Protoc. 10(21):e3809
Schmoellerl, J., Barbosa, IAM., Eder, T., Brandstoetter, T., Schmidt, L., Maurer, B., Troester, S., Pham, HTT., Sagarajit, M., Ebner, J., Manhart, G., Aslan, E., Terlecki-Zaniewicz, S., Van der Veen, C., Hoermann, G., Duployez, N., Petit, A., Lapillonne, H., Puissant, A., Itzykson, R., Moriggl, R., Heuser, M., Meisel, R., Valent, P., Sexl, V., Zuber, J., Grebien, F. (2020)

CDK6 is an essential direct target of NUP98 fusion proteins in acute myeloid leukemia.

Blood. 136(4):387-400
Ahel, J., Lehner, A., Vogel, A., Schleiffer, A., Meinhart, A., Haselbach, D., Clausen, T. (2020)

Moyamoya disease factor RNF213 is a giant E3 ligase with a dynein-like core and a distinct ubiquitin-transfer mechanism.

Elife. 9
Almedawar, S., Vafia, K., Schreiter, S., Neumann, K., Khattak, S., Kurth, T., Ader, M., Karl, MO., Tsang, SH., Tanaka, EM. (2020)

MERTK-Dependent Ensheathment of Photoreceptor Outer Segments by Human Pluripotent Stem Cell-Derived Retinal Pigment Epithelium.

Stem Cell Reports. 14(3):374-389
Meyer, K., Morales-Navarrete, H., Seifert, S., Wilsch-Braeuninger, M., Dahmen, U., Tanaka, EM., Brusch, L., Kalaidzidis, Y., Zerial, M. (2020)

Bile canaliculi remodeling activates YAP via the actin cytoskeleton during liver regeneration.

Mol Syst Biol. 16(2):e8985
Schreiter, S., Vafia, K., Barsacchi, R., Tsang, SH., Bickle, M., Ader, M., Karl, MO., Tanaka, EM., Almedawar, S. (2020)

A Human Retinal Pigment Epithelium-Based Screening Platform Reveals Inducers of Photoreceptor Outer Segments Phagocytosis.

Stem Cell Reports. 15(6):1347-1361
Soukup, V., Tazaki, A., Yamazaki, Y., Pospisilova, A., Epperlein, HH., Tanaka, EM., Cerny, R. (2020)

Oral and Palatal Dentition of Axolotl Arises From a Common Tooth-Competent Zone Along the Ecto-Endodermal Boundary.

Front Cell Dev Biol. 8:622308
Kaplan, HS., Zimmer, M. (2020)

Brain-wide representations of ongoing behavior: a universal principle?

Curr Opin Neurobiol. 64:60-69
Xie, W., Sowemimo, I., Hayashi, R., Wang, J., Burkard, TR., Brennecke, J., Ameres, SL., Patel, DJ. (2020)

Structure-function analysis of microRNA 3'-end trimming by Nibbler.

Proc Natl Acad Sci U S A. 117(48):30370-30379
Esk, C., Lindenhofer, D., Haendeler, S., Wester, RA., Pflug, F., Schroeder, B., Bagley, JA., Elling, U., Zuber, J., von Haeseler, A., Knoblich, JA. (2020)

A human tissue screen identifies a regulator of ER secretion as a brain-size determinant.

Science. 370(6519):935-941
Mitter, M., Gasser, C., Takacs, Z., Langer, CCH., Tang, W., Jessberger, G., Beales, CT., Neuner, E., Ameres, SL., Peters, JM., Goloborodko, A., Micura, R., Gerlich, DW. (2020)

Conformation of sister chromatids in the replicated human genome.

Nature. 586(7827):139-144
Leca, I., Phillips, AW., Hofer, I., Landler, L., Ushakova, L., Cushion, TD., Dürnberger, G., Stejskal, K., Mechtler, K., Keays, DA. (2020)

A proteomic survey of microtubule-associated proteins in a R402H TUBA1A mutant mouse.

PLoS Genet. 16(11):e1009104
Orthofer, M., Valsesia, A., Mägi, R., Wang, QP., Kaczanowska, J., Kozieradzki, I., Leopoldi, A., Cikes, D., Zopf, LM., Tretiakov, EO., Demetz, E., Hilbe, R., Boehm, A., Ticevic, M., Nõukas, M., Jais, A., Spirk, K., Clark, T., Amann, S., Lepamets, M., Neumayr, C., Arnold, C., Dou, Z., Kuhn, V., Novatchkova, M., Cronin, SJF., Tietge, UJF., Müller, S., Pospisilik, JA., Nagy, V., Hui, CC., Lazovic, J., Esterbauer, H., Hagelkruys, A., Tancevski, I., Kiefer, FW., Harkany, T., Haubensak, W., Neely, GG., Metspalu, A., Hager, J., Gheldof, N., Penninger, JM. (2020)

Identification of ALK in Thinness.

Cell. 181(6):1246-1262.e22
Silva, MCC., Powell, S., Ladstätter, S., Gassler, J., Stocsits, R., Tedeschi, A., Peters, JM., Tachibana, K. (2020)

Wapl releases Scc1-cohesin and regulates chromosome structure and segregation in mouse oocytes.

J Cell Biol. 219(4)
Zepeda-Martinez, JA., Pribitzer, C., Wang, J., Bsteh, D., Golumbeanu, S., Zhao, Q., Burkard, TR., Reichholf, B., Rhie, SK., Jude, J., Moussa, HF., Zuber, J., Bell, O. (2020)

Parallel PRC2/cPRC1 and vPRC1 pathways silence lineage-specific genes and maintain self-renewal in mouse embryonic stem cells.

Sci Adv. 6(14):eaax5692
Pliota, P., Böhm, V., Grössl, F., Griessner, J., Valenti, O., Kraitsy, K., Kaczanowska, J., Pasieka, M., Lendl, T., Deussing, JM., Haubensak, W. (2020)

Stress peptides sensitize fear circuitry to promote passive coping.

Mol Psychiatry. 25(2):428-441
Nordmann, GC., Malkemper, EP., Landler, L., Ushakova, L., Nimpf, S., Heinen, R., Schuechner, S., Ogris, E., Keays, DA. (2020)

A high sensitivity ZENK monoclonal antibody to map neuronal activity in Aves.

Sci Rep. 10(1):915
Kogler, M., Tortola, L., Negri, GL., Leopoldi, A., El-Naggar, AM., Mereiter, S., Gomez-Diaz, C., Nitsch, R., Tortora, D., Kavirayani, AM., Gapp, BV., Rao, S., Uribesalgo, I., Hoffmann, D., Cikes, D., Novatchkova, M., Williams, DA., Trent, JM., Ikeda, F., Daugaard, M., Hagelkruys, A., Sorensen, PH., Penninger, JM. (2020)

HACE1 Prevents Lung Carcinogenesis via Inhibition of RAC-Family GTPases.

Cancer Res. 80(14):3009-3022
Le Goff, S., Keçeli, BN., Jeřábková, H., Heckmann, S., Rutten, T., Cotterell, S., Schubert, V., Roitinger, E., Mechtler, K., Franklin, FCH., Tatout, C., Houben, A., Geelen, D., Probst, AV., Lermontova, I. (2020)

The H3 histone chaperone NASPSIM3 escorts CenH3 in Arabidopsis.

Plant J. 101(1):71-86
Gert, KR., Pauli, A. (2020)

Species-specific mechanisms during fertilization.

Curr Top Dev Biol. 140:121-144
Martinez-Chacin, RC., Bodrug, T., Bolhuis, DL., Kedziora, KM., Bonacci, T., Ordureau, A., Gibbs, ME., Weissmann, F., Qiao, R., Grant, GD., Cook, JG., Peters, JM., Wade Harper, J., Emanuele, MJ., Brown, NG. (2020)

Ubiquitin chain-elongating enzyme UBE2S activates the RING E3 ligase APC/C for substrate priming.

Nat Struct Mol Biol. 27(6):550-560
Andergassen, D., Muckenhuber, M., Bammer, PC., Kulinski, TM., Theussl, HC., Shimizu, T., Penninger, JM., Pauler, FM., Hudson, QJ. (2020)

Correction: The Airn lncRNA does not require any DNA elements within its locus to silence distant imprinted genes.

PLoS Genet. 16(10):e1009151
Pinotsis, N., Zielinska, K., Babuta, M., Arolas, JL., Kostan, J., Khan, MB., Schreiner, C., Salmazo, A., Ciccarelli, L., Puchinger, M., Gkougkoulia, EA., Ribeiro, EA., Marlovits, TC., Bhattacharya, A., Djinovic-Carugo, K. (2020)

Calcium modulates the domain flexibility and function of an α-actinin similar to the ancestral α-actinin.

Proc Natl Acad Sci U S A. 117(36):22101-22112
Ganglberger, FJ., Kaczanowska, J., Haubensak, W., Bühler, K. (2020)

A Data Structure for Real-Time Aggregation Queries of Big Brain Networks.

Neuroinformatics. 18(1):131-149
Michlits, G., Jude, J., Hinterndorfer, M., de Almeida, M., Vainorius, G., Hubmann, M., Neumann, T., Schleiffer, A., Burkard, TR., Fellner, M., Gijsbertsen, M., Traunbauer, A., Zuber, J., Elling, U. (2020)

Multilayered VBC score predicts sgRNAs that efficiently generate loss-of-function alleles.

Nat Methods. 17(7):708-716
Beveridge, R., Kessler, D., Rumpel, K., Ettmayer, P., Meinhart, A., Clausen, T. (2020)

Native Mass Spectrometry Can Effectively Predict PROTAC Efficacy.

ACS Cent Sci. 6(7):1223-1230
Dexheimer, PJ., Cochella, L. (2020)

MicroRNAs: From Mechanism to Organism.

Front Cell Dev Biol. 8:409
Pinto, PH., Kroupova, A., Schleiffer, A., Mechtler, K., Jinek, M., Weitzer, S., Martinez, J. (2020)

ANGEL2 is a member of the CCR4 family of deadenylases with 2',3'-cyclic phosphatase activity.

Science. 369(6503):524-530
Morales, C., Ruiz-Torres, M., Rodríguez-Acebes, S., Lafarga, V., Rodríguez-Corsino, M., Megías, D., Cisneros, DA., Peters, JM., Méndez, J., Losada, A. (2020)

PDS5 proteins are required for proper cohesin dynamics and participate in replication fork protection.

J Biol Chem. 295(1):146-157
Hill, L., Ebert, A., Jaritz, M., Wutz, G., Nagasaka, K., Tagoh, H., Kostanova-Poliakova, D., Schindler, K., Sun, Q., Bönelt, P., Fischer, M., Peters, JM., Busslinger, M. (2020)

Wapl repression by Pax5 promotes V gene recombination by Igh loop extrusion.

Nature. 584(7819):142-147
Hochstoeger, T., Al Said, T., Maestre, D., Walter, F., Vilceanu, A., Pedron, M., Cushion, TD., Snider, W., Nimpf, S., Nordmann, GC., Landler, L., Edelman, N., Kruppa, L., Dürnberger, G., Mechtler, K., Schuechner, S., Ogris, E., Malkemper, EP., Weber, S., Schleicher, E., Keays, DA. (2020)

The biophysical, molecular, and anatomical landscape of pigeon CRY4: A candidate light-based quantal magnetosensor.

Sci Adv. 6(33):eabb9110
Bondarieva, A., Raveendran, K., Telychko, V., Rao, HBDP., Ravindranathan, R., Zorzompokou, C., Finsterbusch, F., Dereli, I., Papanikos, F., Tränkner, D., Schleiffer, A., Fei, JF., Klimova, A., Ito, M., Kulkarni, DS., Roeder, I., Hunter, N., Tóth, A. (2020)

Proline-rich protein PRR19 functions with cyclin-like CNTD1 to promote meiotic crossing over in mouse.

Nat Commun. 11(1):3101
Lin, Q., Manley, J., Helmreich, M., Schlumm, F., Li, JM., Robson, DN., Engert, F., Schier, A., Nöbauer, T., Vaziri, A. (2020)

Cerebellar Neurodynamics Predict Decision Timing and Outcome on the Single-Trial Level.

Cell. 180(3):536-551.e17
Fitz, J., Neumann, T., Steininger, M., Wiedemann, EM., Garcia, AC., Athanasiadis, A., Schoeberl, UE., Pavri, R. (2020)

Spt5-mediated enhancer transcription directly couples enhancer activation with physical promoter interaction.

Nat Genet. 52(5):505-515
Sonn-Segev, A., Belacic, K., Bodrug, T., Young, G., VanderLinden, RT., Schulman, BA., Schimpf, J., Friedrich, T., Dip, PV., Schwartz, TU., Bauer, B., Peters, JM., Struwe, WB., Benesch, JLP., Brown, NG., Haselbach, D., Kukura, P. (2020)

Quantifying the heterogeneity of macromolecular machines by mass photometry.

Nat Commun. 11(1):1772
Beveridge, R., Stadlmann, J., Penninger, JM., Mechtler, K. (2020)

A synthetic peptide library for benchmarking crosslinking-mass spectrometry search engines for proteins and protein complexes.

Nat Commun. 11(1):742
Merdanovic, M., Burston, SG., Schmitz, AL., Köcher, S., Knapp, S., Clausen, T., Kaiser, M., Huber, R., Ehrmann, M. (2020)

Activation by substoichiometric inhibition.

Proc Natl Acad Sci U S A. 117(3):1414-1418
Kaplan, HS., Salazar Thula, O., Khoss, N., Zimmer, M. (2020)

Nested Neuronal Dynamics Orchestrate a Behavioral Hierarchy across Timescales.

Neuron. 105(3):562-576.e9
Schlager, S., Salomon, C., Olt, S., Albrecht, C., Ebert, A., Bergner, O., Wachter, J., Trapani, F., Gerlach, D., Voss, T., Traunbauer, A., Jude, J., Hinterndorfer, M., Minnich, M., Schweifer, N., Blake, SM., Zinzalla, V., Drobits, B., McConnell, DB., Kraut, N., Pearson, M., Zuber, J., Koegl, M. (2020)

Inducible knock-out of BCL6 in lymphoma cells results in tumor stasis.

Oncotarget. 11(9):875-890
Finger, F., Ottens, F., Springhorn, A., Drexel, T., Proksch, L., Metz, S., Cochella, L., Hoppe, T. (2020)

Author Correction: Olfaction regulates organismal proteostasis and longevity via microRNA-dependent signalling.

Nat Metab. 2(1):126
Stadlmann, J., Hudecz, O., Krššáková, G., Ctortecka, C., Van Raemdonck, G., Op De Beeck, J., Desmet, G., Penninger, JM., Jacobs, P., Mechtler, K. (2019)

Improved Sensitivity in Low-Input Proteomics Using Micropillar Array-Based Chromatography.

Anal Chem. 91(22):14203-14207
Winnicki, W., Pichler, P., Mechtler, K., Imre, R., Steinmacher, I., Sengölge, G., Knafl, D., Beilhack, G., Wagner, L. (2019)

A novel approach to immunoapheresis of C3a/C3 and proteomic identification of associates.

PeerJ. 7:e8218
Reiter, T., Knafl, D., Agis, H., Mechtler, K., Wagner, L., Winnicki, W. (2019)

Structural analysis of urinary light chains and proteomic analysis of hyaline tubular casts in light chain associated kidney disorders.

PeerJ. 7:e7819
Iacobucci, C., Piotrowski, C., Aebersold, R., Amaral, BC., Andrews, P., Bernfur, K., Borchers, C., Brodie, NI., Bruce, JE., Cao, Y., Chaignepain, S., Chavez, JD., Claverol, S., Cox, J., Davis, T., Degliesposti, G., Dong, MQ., Edinger, N., Emanuelsson, C., Gay, M., Götze, M., Gomes-Neto, F., Gozzo, FC., Gutierrez, C., Haupt, C., Heck, AJR., Herzog, F., Huang, L., Hoopmann, MR., Kalisman, N., Klykov, O., Kukačka, Z., Liu, F., MacCoss, MJ., Mechtler, K., Mesika, R., Moritz, RL., Nagaraj, N., Nesati, V., Neves-Ferreira, AGC., Ninnis, R., Novák, P., O'Reilly, FJ., Pelzing, M., Petrotchenko, E., Piersimoni, L., Plasencia, M., Pukala, T., Rand, KD., Rappsilber, J., Reichmann, D., Sailer, C., Sarnowski, CP., Scheltema, RA., Schmidt, C., Schriemer, DC., Shi, Y., Skehel, JM., Slavin, M., Sobott, F., Solis-Mezarino, V., Stephanowitz, H., Stengel, F., Stieger, CE., Trabjerg, E., Trnka, M., Vilaseca, M., Viner, R., Xiang, Y., Yilmaz, S., Zelter, A., Ziemianowicz, D., Leitner, A., Sinz, A. (2019)

First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study.

Anal Chem. 91(11):6953-6961
Nguyen, CH., Bauer, K., Hackl, H., Schlerka, A., Koller, E., Hladik, A., Stoiber, D., Zuber, J., Staber, PB., Hoelbl-Kovacic, A., Purton, LE., Grebien, F., Wieser, R. (2019)

All-trans retinoic acid enhances, and a pan-RAR antagonist counteracts, the stem cell promoting activity of EVI1 in acute myeloid leukemia.

Cell Death Dis. 10(12):944
Nimpf, S., Nordmann, GC., Kagerbauer, D., Malkemper, EP., Landler, L., Papadaki-Anastasopoulou, A., Ushakova, L., Wenninger-Weinzierl, A., Novatchkova, M., Vincent, P., Lendl, T., Colombini, M., Mason, MJ., Keays, DA. (2019)

A Putative Mechanism for Magnetoreception by Electromagnetic Induction in the Pigeon Inner Ear.

Curr Biol. 29(23):4052-4059.e4
Plaschka, C., Newman, AJ., Nagai, K. (2019)

Structural Basis of Nuclear pre-mRNA Splicing: Lessons from Yeast.

Cold Spring Harb Perspect Biol. 11(5)
McKenzie, MD., Ghisi, M., Oxley, EP., Ngo, S., Cimmino, L., Esnault, C., Liu, R., Salmon, JM., Bell, CC., Ahmed, N., Erlichster, M., Witkowski, MT., Liu, GJ., Chopin, M., Dakic, A., Simankowicz, E., Pomilio, G., Vu, T., Krsmanovic, P., Su, S., Tian, L., Baldwin, TM., Zalcenstein, DA., DiRago, L., Wang, S., Metcalf, D., Johnstone, RW., Croker, BA., Lancaster, GI., Murphy, AJ., Naik, SH., Nutt, SL., Pospisil, V., Schroeder, T., Wall, M., Dawson, MA., Wei, AH., de Thé, H., Ritchie, ME., Zuber, J., Dickins, RA. (2019)

Interconversion between Tumorigenic and Differentiated States in Acute Myeloid Leukemia.

Cell Stem Cell. 25(2):258-272.e9
Ronovsky, M., Zambon, A., Cicvaric, A., Boehm, V., Hoesel, B., Moser, BA., Yang, J., Schmid, JA., Haubensak, WE., Monje, FJ., Pollak, DD. (2019)

A role for miR-132 in learned safety.

Sci Rep. 9(1):528
Tröscher, AR., Werner, B., Kaouane, N., Haubensak, W. (2019)

Spectral recording of gene expression history by fluorescent timer protein.

Biotechniques. 67(4):154-164
Hnia, K., Clausen, T., Moog-Lutz, C. (2019)

Shaping Striated Muscles with Ubiquitin Proteasome System in Health and Disease.

Trends Mol Med. 25(9):760-774
Neumayr, C., Pagani, M., Stark, A., Arnold, CD. (2019)

STARR-seq and UMI-STARR-seq: Assessing Enhancer Activities for Genome-Wide-, High-, and Low-Complexity Candidate Libraries.

Curr Protoc Mol Biol. 128(1):e105
Griss, J., Stanek, F., Hudecz, O., Dürnberger, G., Perez-Riverol, Y., Vizcaíno, JA., Mechtler, K. (2019)

Spectral Clustering Improves Label-Free Quantification of Low-Abundant Proteins.

J Proteome Res. 18(4):1477-1485
Uzel, K., Zimmer, M. (2019)

Imaging the Emergence of Behavior.

Cell. 179(2):285-286
Stieger, CE., Doppler, P., Mechtler, K. (2019)

Optimized Fragmentation Improves the Identification of Peptides Cross-Linked by MS-Cleavable Reagents.

J Proteome Res. 18(3):1363-1370
Uribesalgo, I., Hoffmann, D., Zhang, Y., Kavirayani, A., Lazovic, J., Berta, J., Novatchkova, M., Pai, TP., Wimmer, RA., László, V., Schramek, D., Karim, R., Tortola, L., Deswal, S., Haas, L., Zuber, J., Szűcs, M., Kuba, K., Dome, B., Cao, Y., Haubner, BJ., Penninger, JM. (2019)

Apelin inhibition prevents resistance and metastasis associated with anti-angiogenic therapy.

EMBO Mol Med. 11(8):e9266
Prajapati, S., Haselbach, D., Wittig, S., Patel, MS., Chari, A., Schmidt, C., Stark, H., Tittmann, K. (2019)

Structural and Functional Analyses of the Human PDH Complex Suggest a "Division-of-Labor" Mechanism by Local E1 and E3 Clusters.

Structure. 27(7):1124-1136.e4
Soh, YM., Davidson, IF., Zamuner, S., Basquin, J., Bock, FP., Taschner, M., Veening, JW., De Los Rios, P., Peters, JM., Gruber, S. (2019)

Self-organization of parS centromeres by the ParB CTP hydrolase.

Science. 366(6469):1129-1133
Schwickert, TA., Tagoh, H., Schindler, K., Fischer, M., Jaritz, M., Busslinger, M. (2019)

Ikaros prevents autoimmunity by controlling anergy and Toll-like receptor signaling in B cells.

Nat Immunol. 20(11):1517-1529
Davidson, IF., Bauer, B., Goetz, D., Tang, W., Wutz, G., Peters, JM. (2019)

DNA loop extrusion by human cohesin.

Science. 366(6471):1338-1345
Pfaff, D., Tabansky, I., Haubensak, W. (2019)

Tinbergen's challenge for the neuroscience of behavior.

Proc Natl Acad Sci U S A. 116(20):9704-9710
Watson, ER., Grace, CRR., Zhang, W., Miller, DJ., Davidson, IF., Prabu, JR., Yu, S., Bolhuis, DL., Kulko, ET., Vollrath, R., Haselbach, D., Stark, H., Peters, JM., Brown, NG., Sidhu, SS., Schulman, BA. (2019)

Protein engineering of a ubiquitin-variant inhibitor of APC/C identifies a cryptic K48 ubiquitin chain binding site.

Proc Natl Acad Sci U S A. 116(35):17280-17289
Lieb, S., Blaha-Ostermann, S., Kamper, E., Rippka, J., Schwarz, C., Ehrenhöfer-Wölfer, K., Schlattl, A., Wernitznig, A., Lipp, JJ., Nagasaka, K., van der Lelij, P., Bader, G., Koi, M., Goel, A., Neumüller, RA., Peters, JM., Kraut, N., Pearson, MA., Petronczki, M., Wöhrle, S. (2019)

Werner syndrome helicase is a selective vulnerability of microsatellite instability-high tumor cells.

Elife. 8
Currie, JD., Grosser, L., Murawala, P., Schuez, M., Michel, M., Tanaka, EM., Sandoval-Guzmán, T. (2019)

The Prrx1 limb enhancer marks an adult subpopulation of injury-responsive dermal fibroblasts.

Biol Open. 8(7)
Doblmann, J., Dusberger, F., Imre, R., Hudecz, O., Stanek, F., Mechtler, K., Dürnberger, G. (2019)

apQuant: Accurate Label-Free Quantification by Quality Filtering.

J Proteome Res. 18(1):535-541
Weisenburger, S., Tejera, F., Demas, J., Chen, B., Manley, J., Sparks, FT., Martínez Traub, F., Daigle, T., Zeng, H., Losonczy, A., Vaziri, A. (2019)

Volumetric Ca2+ Imaging in the Mouse Brain Using Hybrid Multiplexed Sculpted Light Microscopy.

Cell. 177(4):1050-1066.e14
Holzmann, J., Politi, AZ., Nagasaka, K., Hantsche-Grininger, M., Walther, N., Koch, B., Fuchs, J., Dürnberger, G., Tang, W., Ladurner, R., Stocsits, RR., Busslinger, GA., Novák, B., Mechtler, K., Davidson, IF., Ellenberg, J., Peters, JM. (2019)

Absolute quantification of cohesin, CTCF and their regulators in human cells.

Elife. 8
Lust, K., Tanaka, EM. (2019)

A Comparative Perspective on Brain Regeneration in Amphibians and Teleost Fish.

Dev Neurobiol. 79(5):424-436
Batki, J., Schnabl, J., Wang, J., Handler, D., Andreev, VI., Stieger, CE., Novatchkova, M., Lampersberger, L., Kauneckaite, K., Xie, W., Mechtler, K., Patel, DJ., Brennecke, J. (2019)

The nascent RNA binding complex SFiNX licenses piRNA-guided heterochromatin formation.

Nat Struct Mol Biol. 26(8):720-731
Hong, RL., Riebesell, M., Bumbarger, DJ., Cook, SJ., Carstensen, HR., Sarpolaki, T., Cochella, L., Castrejon, J., Moreno, E., Sieriebriennikov, B., Hobert, O., Sommer, RJ. (2019)

Evolution of neuronal anatomy and circuitry in two highly divergent nematode species.

Elife. 8
Hinterndorfer, M., Zuber, J. (2019)

Functional-genetic approaches to understanding drug response and resistance.

Curr Opin Genet Dev. 54:41-47
Menzl, I., Zhang, T., Berger-Becvar, A., Grausenburger, R., Heller, G., Prchal-Murphy, M., Edlinger, L., Knab, VM., Uras, IZ., Grundschober, E., Bauer, K., Roth, M., Skucha, A., Liu, Y., Hatcher, JM., Liang, Y., Kwiatkowski, NP., Fux, D., Hoelbl-Kovacic, A., Kubicek, S., Melo, JV., Valent, P., Weichhart, T., Grebien, F., Zuber, J., Gray, NS., Sexl, V. (2019)

A kinase-independent role for CDK8 in BCR-ABL1+ leukemia.

Nat Commun. 10(1):4741
Canela, A., Maman, Y., Huang, SN., Wutz, G., Tang, W., Zagnoli-Vieira, G., Callen, E., Wong, N., Day, A., Peters, JM., Caldecott, KW., Pommier, Y., Nussenzweig, A. (2019)

Topoisomerase II-Induced Chromosome Breakage and Translocation Is Determined by Chromosome Architecture and Transcriptional Activity.

Mol Cell. 75(2):252-266.e8
Zess, EK., Jensen, C., Cruz-Mireles, N., De la Concepcion, JC., Sklenar, J., Stephani, M., Imre, R., Roitinger, E., Hughes, R., Belhaj, K., Mechtler, K., Menke, FLH., Bozkurt, T., Banfield, MJ., Kamoun, S., Maqbool, A., Dagdas, YF. (2019)

N-terminal β-strand underpins biochemical specialization of an ATG8 isoform.

PLoS Biol. 17(7):e3000373
Malkemper, EP., Kagerbauer, D., Ushakova, L., Nimpf, S., Pichler, P., Treiber, CD., de Jonge, M., Shaw, J., Keays, DA. (2019)

No evidence for a magnetite-based magnetoreceptor in the lagena of pigeons.

Curr Biol. 29(1):R14-R15
Hellerschmied, D., Lehner, A., Franicevic, N., Arnese, R., Johnson, C., Vogel, A., Meinhart, A., Kurzbauer, R., Deszcz, L., Gazda, L., Geeves, M., Clausen, T. (2019)

Molecular features of the UNC-45 chaperone critical for binding and folding muscle myosin.

Nat Commun. 10(1):4781
Rauschmeier, R., Gustafsson, C., Reinhardt, A., A-Gonzalez, N., Tortola, L., Cansever, D., Subramanian, S., Taneja, R., Rossner, MJ., Sieweke, MH., Greter, M., Månsson, R., Busslinger, M., Kreslavsky, T. (2019)

Bhlhe40 and Bhlhe41 transcription factors regulate alveolar macrophage self-renewal and identity.

EMBO J. 38(19):e101233
Watson, ER., Brown, NG., Peters, JM., Stark, H., Schulman, BA. (2019)

Posing the APC/C E3 Ubiquitin Ligase to Orchestrate Cell Division.

Trends Cell Biol. 29(2):117-134
Bönelt, P., Wöhner, M., Minnich, M., Tagoh, H., Fischer, M., Jaritz, M., Kavirayani, A., Garimella, M., Karlsson, MC., Busslinger, M. (2019)

Precocious expression of Blimp1 in B cells causes autoimmune disease with increased self-reactive plasma cells.

EMBO J. 38(2)
Schmidt, O., Weyer, Y., Baumann, V., Widerin, MA., Eising, S., Angelova, M., Schleiffer, A., Kremser, L., Lindner, H., Peter, M., Fröhlich, F., Teis, D. (2019)

Endosome and Golgi-associated degradation (EGAD) of membrane proteins regulates sphingolipid metabolism.

EMBO J. 38(15):e101433
Andergassen, D., Muckenhuber, M., Bammer, PC., Kulinski, TM., Theussl, HC., Shimizu, T., Penninger, JM., Pauler, FM., Hudson, QJ. (2019)

The Airn lncRNA does not require any DNA elements within its locus to silence distant imprinted genes.

PLoS Genet. 15(7):e1008268
Haider, S., Gamperl, M., Burkard, TR., Kunihs, V., Kaindl, U., Junttila, S., Fiala, C., Schmidt, K., Mendjan, S., Knöfler, M., Latos, PA. (2019)

Estrogen Signaling Drives Ciliogenesis in Human Endometrial Organoids.

Endocrinology. 160(10):2282-2297
Matsushima, W., Herzog, VA., Neumann, T., Gapp, K., Zuber, J., Ameres, SL., Miska, EA. (2019)

Sequencing cell-type-specific transcriptomes with SLAM-ITseq.

Nat Protoc. 14(8):2261-2278
Novikov, A., Fu, Y., Huang, W., Freeman, B., Patel, R., van Ginkel, C., Koepsell, H., Busslinger, M., Onishi, A., Nespoux, J., Vallon, V. (2019)

SGLT2 inhibition and renal urate excretion: role of luminal glucose, GLUT9, and URAT1.

Am J Physiol Renal Physiol. 316(1):F173-F185
Durai, V., Bagadia, P., Granja, JM., Satpathy, AT., Kulkarni, DH., Davidson, JT., Wu, R., Patel, SJ., Iwata, A., Liu, TT., Huang, X., Briseño, CG., Grajales-Reyes, GE., Wöhner, M., Tagoh, H., Kee, BL., Newberry, RD., Busslinger, M., Chang, HY., Murphy, TL., Murphy, KM. (2019)

Cryptic activation of an Irf8 enhancer governs cDC1 fate specification.

Nat Immunol. 20(9):1161-1173
Masselink, W., Reumann, D., Murawala, P., Pasierbek, P., Taniguchi, Y., Bonnay, F., Meixner, K., Knoblich, JA., Tanaka, EM. (2019)

Broad applicability of a streamlined ethyl cinnamate-based clearing procedure.

Development. 146(3)
Papanikos, F., Clément, JAJ., Testa, E., Ravindranathan, R., Grey, C., Dereli, I., Bondarieva, A., Valerio-Cabrera, S., Stanzione, M., Schleiffer, A., Jansa, P., Lustyk, D., Fei, JF., Adams, IR., Forejt, J., Barchi, M., de Massy, B., Toth, A. (2019)

Mouse ANKRD31 Regulates Spatiotemporal Patterning of Meiotic Recombination Initiation and Ensures Recombination between X and Y Sex Chromosomes.

Mol Cell. 74(5):1069-1085.e11
Haberle, V., Arnold, CD., Pagani, M., Rath, M., Schernhuber, K., Stark, A. (2019)

Transcriptional cofactors display specificity for distinct types of core promoters.

Nature. 570(7759):122-126
Platanitis, E., Demiroz, D., Schneller, A., Fischer, K., Capelle, C., Hartl, M., Gossenreiter, T., Müller, M., Novatchkova, M., Decker, T. (2019)

A molecular switch from STAT2-IRF9 to ISGF3 underlies interferon-induced gene transcription.

Nat Commun. 10(1):2921
Ng, C., Aichinger, M., Nguyen, T., Au, C., Najar, T., Wu, L., Mesa, KR., Liao, W., Quivy, JP., Hubert, B., Almouzni, G., Zuber, J., Littman, DR. (2019)

The histone chaperone CAF-1 cooperates with the DNA methyltransferases to maintain Cd4 silencing in cytotoxic T cells.

Genes Dev. 33(11-12):669-683
Suskiewicz, MJ., Hajdusits, B., Beveridge, R., Heuck, A., Vu, LD., Kurzbauer, R., Hauer, K., Thoeny, V., Rumpel, K., Mechtler, K., Meinhart, A., Clausen, T. (2019)

Structure of McsB, a protein kinase for regulated arginine phosphorylation.

Nat Chem Biol. 15(5):510-518
Kamieniarz-Gdula, K., Gdula, MR., Panser, K., Nojima, T., Monks, J., Wiśniewski, JR., Riepsaame, J., Brockdorff, N., Pauli, A., Proudfoot, NJ. (2019)

Selective Roles of Vertebrate PCF11 in Premature and Full-Length Transcript Termination.

Mol Cell. 74(1):158-172.e9
Sdelci, S., Rendeiro, AF., Rathert, P., You, W., Lin, JG., Ringler, A., Hofstätter, G., Moll, HP., Gürtl, B., Farlik, M., Schick, S., Klepsch, F., Oldach, M., Buphamalai, P., Schischlik, F., Májek, P., Parapatics, K., Schmidl, C., Schuster, M., Penz, T., Buckley, DL., Hudecz, O., Imre, R., Wang, SY., Maric, HM., Kralovics, R., Bennett, KL., Müller, AC., Mechtler, K., Menche, J., Bradner, JE., Winter, GE., Klavins, K., Casanova, E., Bock, C., Zuber, J., Kubicek, S. (2019)

MTHFD1 interaction with BRD4 links folate metabolism to transcriptional regulation.

Nat Genet. 51(6):990-998
Neumann, T., Herzog, VA., Muhar, M., von Haeseler, A., Zuber, J., Ameres, SL., Rescheneder, P. (2019)

Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets.

BMC Bioinformatics. 20(1):258
Fei, JF., Lou, WP., Knapp, D., Murawala, P., Gerber, T., Taniguchi, Y., Nowoshilow, S., Khattak, S., Tanaka, EM. (2019)

Publisher Correction: Application and optimization of CRISPR-Cas9-mediated genome engineering in axolotl (Ambystoma mexicanum).

Nat Protoc. 14(8):2597
Wimmer, RA., Leopoldi, A., Aichinger, M., Wick, N., Hantusch, B., Novatchkova, M., Taubenschmid, J., Hämmerle, M., Esk, C., Bagley, JA., Lindenhofer, D., Chen, G., Boehm, M., Agu, CA., Yang, F., Fu, B., Zuber, J., Knoblich, JA., Kerjaschki, D., Penninger, JM. (2019)

Human blood vessel organoids as a model of diabetic vasculopathy.

Nature. 565(7740):505-510
Wang, B., Wang, M., Zhang, W., Xiao, T., Chen, CH., Wu, A., Wu, F., Traugh, N., Wang, X., Li, Z., Mei, S., Cui, Y., Shi, S., Lipp, JJ., Hinterndorfer, M., Zuber, J., Brown, M., Li, W., Liu, XS. (2019)

Integrative analysis of pooled CRISPR genetic screens using MAGeCKFlute.

Nat Protoc. 14(3):756-780
Ganglberger, F., Swoboda, N., Frauenstein, L., Kaczanowska, J., Haubensak, W., Buehle,r K. (2019)

BrainTrawler: A visual analytics framework for iterative exploration of heterogeneous big brain data

Computer & Graphics. 82:304-320
Finger, F., Ottens, F., Springhorn, A., Drexel, T., Proksch, L., Metz, S., Cochella, L., Hoppe, T. (2019)

Olfaction regulates organismal proteostasis and longevity via microRNA-dependent signalling

Nature Metabolism. 1:350–359
Cronin, SJF., Seehus, C., Weidinger, A., Talbot, S., Reissig, S., Seifert, M., Pierson, Y., McNeill, E., Longhi, MS., Turnes, BL., Kreslavsky, T., Kogler, M., Hoffmann, D., Ticevic, M., da Luz Scheffer, D., Tortola, L., Cikes, D., Jais, A., Rangachari, M., Rao, S., Paolino, M., Novatchkova, M., Aichinger, M., Barrett, L., Latremoliere, A., Wirnsberger, G., Lametschwandtner, G., Busslinger, M., Zicha, S., Latini, A., Robson, SC., Waisman, A., Andrews, N., Costigan, M., Channon, KM., Weiss, G., Kozlov, AV., Tebbe, M., Johnsson, K., Woolf, CJ., Penninger, JM. (2019)

Publisher Correction: The metabolite BH4 controls T cell proliferation in autoimmunity and cancer.

Nature. 572(7769):E18
Matsushima, W., Herzog, VA., Neumann, T., Gapp, K., Zuber, J., Ameres, SL., Miska, EA. (2019)

Publisher Correction: Sequencing cell-type-specific transcriptomes with SLAM-ITseq.

Nat Protoc. 14(8):2597
Benke, S., Agerer, B., Haas, L., Stöger, M., Lercher, A., Gabler, L., Kiss, I., Scinicariello, S., Berger, W., Bergthaler, A., Obenauf, AC., Versteeg, GA. (2018)

Human tripartite motif protein 52 is required for cell context-dependent proliferation.

Oncotarget. 9(17):13565-13581
Bellutti, F., Tigan, AS., Nebenfuehr, S., Dolezal, M., Zojer, M., Grausenburger, R., Hartenberger, S., Kollmann, S., Doma, E., Prchal-Murphy, M., Uras, IZ., Höllein, A., Neuberg, DS., Ebert, BL., Ringler, A., Mueller, AC., Loizou, JI., Hinds, PW., Vogl, C., Heller, G., Kubicek, S., Zuber, J., Malumbres, M., Farlik, M., Villunger, A., Kollmann, K., Sexl, V. (2018)

CDK6 Antagonizes p53-Induced Responses during Tumorigenesis.

Cancer Discov. 8(7):884-897
Malkemper, EP., Mason, MJ., Kagerbauer, D., Nimpf, S., Keays, DA. (2018)

Ectopic otoconial formation in the lagena of the pigeon inner ear.

Biol Open. 7(8)
Sanyal, S., Molnarova, L., Richterova, J., Huraiova, B., Benko, Z., Polakova, S., Cipakova, I., Sevcovicova, A., Gaplovska-Kysela, K., Mechtler, K., Cipak, L., Gregan, J. (2018)

Mutations that prevent methylation of cohesin render sensitivity to DNA damage in S. pombe.

J Cell Sci. 131(13)
Engels, S., Treiber, CD., Salzer, MC., Michalik, A., Ushakova, L., Keays, DA., Mouritsen, H., Heyers, D. (2018)

Lidocaine is a nocebo treatment for trigeminally mediated magnetic orientation in birds.

J R Soc Interface. 15(145)
Yang, T., Cui, H., Wen, M., Zuber, J., Kogan, SC., Wei, G. (2018)

TCEA1 regulates the proliferative potential of mouse myeloid cells.

Exp Cell Res. 370(2):551-560
Medelnik, JP., Roensch, K., Okawa, S., Del Sol, A., Chara, O., Mchedlishvili, L., Tanaka, EM. (2018)

Signaling-Dependent Control of Apical Membrane Size and Self-Renewal in Rosette-Stage Human Neuroepithelial Stem Cells.

Stem Cell Reports. 10(6):1751-1765
Haider, S., Meinhardt, G., Saleh, L., Kunihs, V., Gamperl, M., Kaindl, U., Ellinger, A., Burkard, TR., Fiala, C., Pollheimer, J., Mendjan, S., Latos, PA., Knöfler, M. (2018)

Self-Renewing Trophoblast Organoids Recapitulate the Developmental Program of the Early Human Placenta.

Stem Cell Reports. 11(2):537-551
Wissel, S., Harzer, H., Bonnay, F., Burkard, TR., Neumüller, RA., Knoblich, JA. (2018)

Time-resolved transcriptomics in neural stem cells identifies a v-ATPase/Notch regulatory loop.

J Cell Biol. 217(9):3285-3300
Kaplan, HS., Nichols, ALA., Zimmer, M. (2018)

Sensorimotor integration in Caenorhabditis elegans: a reappraisal towards dynamic and distributed computations.

Philos Trans R Soc Lond B Biol Sci. 373(1758)
Haberle, V., Stark, A. (2018)

Eukaryotic core promoters and the functional basis of transcription initiation.

Nat Rev Mol Cell Biol. 19(10):621-637
Dorfer, V., Maltsev, S., Winkler, S., Mechtler, K. (2018)

CharmeRT: Boosting Peptide Identifications by Chimeric Spectra Identification and Retention Time Prediction.

J Proteome Res. 17(8):2581-2589
Mueller, N., Wicklein, D., Eisenwort, G., Jawhar, M., Berger, D., Stefanzl, G., Greiner, G., Boehm, A., Kornauth, C., Muellauer, L., Sehner, S., Hoermann, G., Sperr, WR., Staber, PB., Jaeger, U., Zuber, J., Arock, M., Schumacher, U., Reiter, A., Valent, P. (2018)

CD44 is a RAS/STAT5-regulated invasion receptor that triggers disease expansion in advanced mastocytosis.

Blood. 132(18):1936-1950
Corsini, NS., Peer, AM., Moeseneder, P., Roiuk, M., Burkard, TR., Theussl, HC., Moll, I., Knoblich, JA. (2018)

Coordinated Control of mRNA and rRNA Processing Controls Embryonic Stem Cell Pluripotency and Differentiation.

Cell Stem Cell. 22(4):543-558.e12
Tripathy, R., Leca, I., van Dijk, T., Weiss, J., van Bon, BW., Sergaki, MC., Gstrein, T., Breuss, M., Tian, G., Bahi-Buisson, N., Paciorkowski, AR., Pagnamenta, AT., Wenninger-Weinzierl, A., Martinez-Reza, MF., Landler, L., Lise, S., Taylor, JC., Terrone, G., Vitiello, G., Del Giudice, E., Brunetti-Pierri, N., D'Amico, A., Reymond, A., Voisin, N., Bernstein, JA., Farrelly, E., Kini, U., Leonard, TA., Valence, S., Burglen, L., Armstrong, L., Hiatt, SM., Cooper, GM., Aldinger, KA., Dobyns, WB., Mirzaa, G., Pierson, TM., Baas, F., Chelly, J., Cowan, NJ., Keays, DA. (2018)

Mutations in MAST1 Cause Mega-Corpus-Callosum Syndrome with Cerebellar Hypoplasia and Cortical Malformations.

Neuron. 100(6):1354-1368.e5
Stadlmann, J., Hoi, DM., Taubenschmid, J., Mechtler, K., Penninger, JM. (2018)

Analysis of PNGase F-Resistant N-Glycopeptides Using SugarQb for Proteome Discoverer 2.1 Reveals Cryptic Substrate Specificities.

Proteomics. 18(13):e1700436
Skora, S., Mende, F., Zimmer, M. (2018)

Energy Scarcity Promotes a Brain-wide Sleep State Modulated by Insulin Signaling in C. elegans.

Cell Rep. 22(4):953-966
Kaplan, HS., Zimmer, M. (2018)

Sensorimotor Integration for Decision Making: How the Worm Steers.

Neuron. 97(2):258-260
Weisenburger, S., Vaziri, A. (2018)

A Guide to Emerging Technologies for Large-Scale and Whole-Brain Optical Imaging of Neuronal Activity.

Annu Rev Neurosci. 41:431-452
Cronin, SJF., Seehus, C., Weidinger, A., Talbot, S., Reissig, S., Seifert, M., Pierson, Y., McNeill, E., Longhi, MS., Turnes, BL., Kreslavsky, T., Kogler, M., Hoffmann, D., Ticevic, M., da Luz Scheffer, D., Tortola, L., Cikes, D., Jais, A., Rangachari, M., Rao, S., Paolino, M., Novatchkova, M., Aichinger, M., Barrett, L., Latremoliere, A., Wirnsberger, G., Lametschwandtner, G., Busslinger, M., Zicha, S., Latini, A., Robson, SC., Waisman, A., Andrews, N., Costigan, M., Channon, KM., Weiss, G., Kozlov, AV., Tebbe, M., Johnsson, K., Woolf, CJ., Penninger, JM. (2018)

The metabolite BH4 controls T cell proliferation in autoimmunity and cancer.

Nature. 563(7732):564-568
Groessl, F., Munsch, T., Meis, S., Griessner, J., Kaczanowska, J., Pliota, P., Kargl, D., Badurek, S., Kraitsy, K., Rassoulpour, A., Zuber, J., Lessmann, V., Haubensak, W. (2018)

Dorsal tegmental dopamine neurons gate associative learning of fear.

Nat Neurosci. 21(7):952-962
Gstrein, T., Edwards, A., Přistoupilová, A., Leca, I., Breuss, M., Pilat-Carotta, S., Hansen, AH., Tripathy, R., Traunbauer, AK., Hochstoeger, T., Rosoklija, G., Repic, M., Landler, L., Stránecký, V., Dürnberger, G., Keane, TM., Zuber, J., Adams, DJ., Flint, J., Honzik, T., Gut, M., Beltran, S., Mechtler, K., Sherr, E., Kmoch, S., Gut, I., Keays, DA. (2018)

Mutations in Vps15 perturb neuronal migration in mice and are associated with neurodevelopmental disease in humans.

Nat Neurosci. 21(2):207-217
Skocek, O., Nöbauer, T., Weilguny, L., Martínez Traub, F., Xia, CN., Molodtsov, MI., Grama, A., Yamagata, M., Aharoni, D., Cox, DD., Golshani, P., Vaziri, A. (2018)

High-speed volumetric imaging of neuronal activity in freely moving rodents.

Nat Methods. 15(6):429-432
Stanyte, R., Nuebler, J., Blaukopf, C., Hoefler, R., Stocsits, R., Peters, JM., Gerlich, DW. (2018)

Dynamics of sister chromatid resolution during cell cycle progression.

J Cell Biol. 217(6):1985-2004
Muerdter, F., Boryń, ŁM., Woodfin, AR., Neumayr, C., Rath, M., Zabidi, MA., Pagani, M., Haberle, V., Kazmar, T., Catarino, RR., Schernhuber, K., Arnold, CD., Stark, A. (2018)

Resolving systematic errors in widely used enhancer activity assays in human cells.

Nat Methods. 15(2):141-149
Ayata, P., Badimon, A., Strasburger, HJ., Duff, MK., Montgomery, SE., Loh, YE., Ebert, A., Pimenova, AA., Ramirez, BR., Chan, AT., Sullivan, JM., Purushothaman, I., Scarpa, JR., Goate, AM., Busslinger, M., Shen, L., Losic, B., Schaefer, A. (2018)

Epigenetic regulation of brain region-specific microglia clearance activity.

Nat Neurosci. 21(8):1049-1060
Alberti, C., Manzenreither, RA., Sowemimo, I., Burkard, TR., Wang, J., Mahofsky, K., Ameres, SL., Cochella, L. (2018)

Cell-type specific sequencing of microRNAs from complex animal tissues.

Nat Methods. 15(4):283-289
Landler, L., Keays, DA. (2018)

Cryptochrome: The magnetosensor with a sinister side?

PLoS Biol. 16(10):e3000018
Arnold, CD., Nemčko, F., Woodfin, AR., Wienerroither, S., Vlasova, A., Schleiffer, A., Pagani, M., Rath, M., Stark, A. (2018)

A high-throughput method to identify trans-activation domains within transcription factor sequences.

EMBO J. 37(16)
Fei, JF., Lou, WP., Knapp, D., Murawala, P., Gerber, T., Taniguchi, Y., Nowoshilow, S., Khattak, S., Tanaka, EM. (2018)

Application and optimization of CRISPR-Cas9-mediated genome engineering in axolotl (Ambystoma mexicanum).

Nat Protoc. 13(12):2908-2943
Orbán-Németh, Z., Beveridge, R., Hollenstein, DM., Rampler, E., Stranzl, T., Hudecz, O., Doblmann, J., Schlögelhofer, P., Mechtler, K. (2018)

Structural prediction of protein models using distance restraints derived from cross-linking mass spectrometry data.

Nat Protoc. 13(3):478-494
Haas, L., Wiesner, T., Obenauf, AC. (2018)

A new era of proactive melanoma therapy: hit hard, hit early.

Br J Dermatol. 178(4):817-820
Ivanov, MP., Ladurner, R., Poser, I., Beveridge, R., Rampler, E., Hudecz, O., Novatchkova, M., Hériché, JK., Wutz, G., van der Lelij, P., Kreidl, E., Hutchins, JR., Axelsson-Ekker, H., Ellenberg, J., Hyman, AA., Mechtler, K., Peters, JM. (2018)

The replicative helicase MCM recruits cohesin acetyltransferase ESCO2 to mediate centromeric sister chromatid cohesion.

EMBO J. 37(15)
Orbán-Németh, Z., Beveridge, R., Hollenstein, DM., Rampler, E., Stranzl, T., Hudecz, O., Doblmann, J., Schlögelhofer, P., Mechtler, K. (2018)

Reply to 'Defining distance restraints in HADDOCK'.

Nat Protoc. 13(7):1503-1505
Seehawer, M., Heinzmann, F., D'Artista, L., Harbig, J., Roux, PF., Hoenicke, L., Dang, H., Klotz, S., Robinson, L., Doré, G., Rozenblum, N., Kang, TW., Chawla, R., Buch, T., Vucur, M., Roth, M., Zuber, J., Luedde, T., Sipos, B., Longerich, T., Heikenwälder, M., Wang, XW., Bischof, O., Zender, L. (2018)

Necroptosis microenvironment directs lineage commitment in liver cancer.

Nature. 562(7725):69-75
Kreslavsky, T., Wong, JB., Fischer, M., Skok, JA., Busslinger, M. (2018)

Control of B-1a cell development by instructive BCR signaling.

Curr Opin Immunol. 51:24-31
Cai, Y., Hossain, MJ., Hériché, JK., Politi, AZ., Walther, N., Koch, B., Wachsmuth, M., Nijmeijer, B., Kueblbeck, M., Martinic-Kavur, M., Ladurner, R., Alexander, S., Peters, JM., Ellenberg, J. (2018)

Experimental and computational framework for a dynamic protein atlas of human cell division.

Nature. 561(7723):411-415
Gerlach, D., Tontsch-Grunt, U., Baum, A., Popow, J., Scharn, D., Hofmann, MH., Engelhardt, H., Kaya, O., Beck, J., Schweifer, N., Gerstberger, T., Zuber, J., Savarese, F., Kraut, N. (2018)

The novel BET bromodomain inhibitor BI 894999 represses super-enhancer-associated transcription and synergizes with CDK9 inhibition in AML.

Oncogene. 37(20):2687-2701
Weissmann, F., Peters, JM. (2018)

Expressing Multi-subunit Complexes Using biGBac.

Methods Mol Biol. 1764:329-343
Landler, L., Nimpf, S., Hochstoeger, T., Nordmann, GC., Papadaki-Anastasopoulou, A., Keays, DA. (2018)

Comment on "Magnetosensitive neurons mediate geomagnetic orientation in Caenorhabditis elegans".

Elife. 7
Szappanos, D., Tschismarov, R., Perlot, T., Westermayer, S., Fischer, K., Platanitis, E., Kallinger, F., Novatchkova, M., Lassnig, C., Müller, M., Sexl, V., Bennett, KL., Foong-Sobis, M., Penninger, JM., Decker, T. (2018)

The RNA helicase DDX3X is an essential mediator of innate antimicrobial immunity.

PLoS Pathog. 14(11):e1007397
Peter, B., Bibi, S., Eisenwort, G., Wingelhofer, B., Berger, D., Stefanzl, G., Blatt, K., Herrmann, H., Hadzijusufovic, E., Hoermann, G., Hoffmann, T., Schwaab, J., Jawhar, M., Willmann, M., Sperr, WR., Zuber, J., Sotlar, K., Horny, HP., Moriggl, R., Reiter, A., Arock, M., Valent, P. (2018)

Drug-induced inhibition of phosphorylation of STAT5 overrides drug resistance in neoplastic mast cells.

Leukemia. 32(4):1016-1022
Plaschka, C., Lin, PC., Charenton, C., Nagai, K. (2018)

Prespliceosome structure provides insights into spliceosome assembly and regulation.

Nature. 559(7714):419-422
Adams, FF., Hoffmann, T., Zuber, J., Heckl, D., Schambach, A., Schwarzer, A. (2018)

Pooled Generation of Lentiviral Tetracycline-Regulated microRNA Embedded Short Hairpin RNA Libraries.

Hum Gene Ther Methods. 29(1):16-29
Haselbach, D., Komarov, I., Agafonov, DE., Hartmuth, K., Graf, B., Dybkov, O., Urlaub, H., Kastner, B., Lührmann, R., Stark, H. (2018)

Structure and Conformational Dynamics of the Human Spliceosomal Bact Complex.

Cell. 172(3):454-464.e11
Gerber, T., Murawala, P., Knapp, D., Masselink, W., Schuez, M., Hermann, S., Gac-Santel, M., Nowoshilow, S., Kageyama, J., Khattak, S., Currie, JD., Camp, JG., Tanaka, EM., Treutlein, B. (2018)

Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration.

Science. 362(6413)
Skucha, A., Ebner, J., Schmöllerl, J., Roth, M., Eder, T., César-Razquin, A., Stukalov, A., Vittori, S., Muhar, M., Lu, B., Aichinger, M., Jude, J., Müller, AC., Győrffy, B., Vakoc, CR., Valent, P., Bennett, KL., Zuber, J., Superti-Furga, G., Grebien, F. (2018)

MLL-fusion-driven leukemia requires SETD2 to safeguard genomic integrity.

Nat Commun. 9(1):1983
Silva, MCC., Wutz, G., Tachibana, K., Peters, JM. (2018)

Analysis of chromosomes from mouse oocytes and mammalian cultured cells by light microscopy.

Methods Cell Biol. 144:287-305
Ganglberger, F., Kaczanowska, J., Penninger, JM., Hess, A., Bühler, K., Haubensak, W. (2018)

Predicting functional neuroanatomical maps from fusing brain networks with genetic information.

Neuroimage. 170:113-120
Herberg, S., Gert, KR., Schleiffer, A., Pauli, A. (2018)

The Ly6/uPAR protein Bouncer is necessary and sufficient for species-specific fertilization.

Science. 361(6406):1029-1033
Holt, C., Campbell, M., Keays, DA., Edelman, N., Kapusta, A., Maclary, E., T Domyan, E., Suh, A., Warren, WC., Yandell, M., Gilbert, MTP., Shapiro, MD. (2018)

Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia).

G3 (Bethesda). 8(5):1391-1398
Rouse, T., Aubry, G., Cho, Y., Zimmer, M., Lu, H. (2018)

A programmable platform for sub-second multichemical dynamic stimulation and neuronal functional imaging in C. elegans.

Lab Chip. 18(3):505-513
Dorl, S., Winkler, S., Mechtler, K., Dorfer, V. (2018)

PhoStar: Identifying Tandem Mass Spectra of Phosphorylated Peptides before Database Search.

J Proteome Res. 17(1):290-295
Osman, K., Yang, J., Roitinger, E., Lambing, C., Heckmann, S., Howell, E., Cuacos, M., Imre, R., Dürnberger, G., Mechtler, K., Armstrong, S., Franklin, FCH. (2018)

Affinity proteomics reveals extensive phosphorylation of the Brassica chromosome axis protein ASY1 and a network of associated proteins at prophase I of meiosis.

Plant J. 93(1):17-33
Matsushima, W., Herzog, VA., Neumann, T., Gapp, K., Zuber, J., Ameres, SL., Miska, EA. (2018)

SLAM-ITseq: sequencing cell type-specific transcriptomes without cell sorting.

Development. 145(13)
Muhar, M., Ebert, A., Neumann, T., Umkehrer, C., Jude, J., Wieshofer, C., Rescheneder, P., Lipp, JJ., Herzog, VA., Reichholf, B., Cisneros, DA., Hoffmann, T., Schlapansky, MF., Bhat, P., von Haeseler, A., Köcher, T., Obenauf, AC., Popow, J., Ameres, SL., Zuber, J. (2018)

SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis.

Science. 360(6390):800-805
Smakowska-Luzan, E., Mott, GA., Parys, K., Stegmann, M., Howton, TC., Layeghifard, M., Neuhold, J., Lehner, A., Kong, J., Grünwald, K., Weinberger, N., Satbhai, SB., Mayer, D., Busch, W., Madalinski, M., Stolt-Bergner, P., Provart, NJ., Mukhtar, MS., Zipfel, C., Desveaux, D., Guttman, DS., Belkhadir, Y. (2018)

An extracellular network of Arabidopsis leucine-rich repeat receptor kinases.

Nature. 553(7688):342-346
Nowoshilow, S., Schloissnig, S., Fei, JF., Dahl, A., Pang, AWC., Pippel, M., Winkler, S., Hastie, AR., Young, G., Roscito, JG., Falcon, F., Knapp, D., Powell, S., Cruz, A., Cao, H., Habermann, B., Hiller, M., Tanaka, EM., Myers, EW. (2018)

The axolotl genome and the evolution of key tissue formation regulators.

Nature. 554(7690):50-55
Milanovic, M., Fan, DNY., Belenki, D., Däbritz, JHM., Zhao, Z., Yu, Y., Dörr, JR., Dimitrova, L., Lenze, D., Monteiro Barbosa, IA., Mendoza-Parra, MA., Kanashova, T., Metzner, M., Pardon, K., Reimann, M., Trumpp, A., Dörken, B., Zuber, J., Gronemeyer, H., Hummel, M., Dittmar, G., Lee, S., Schmitt, CA. (2018)

Senescence-associated reprogramming promotes cancer stemness.

Nature. 553(7686):96-100
Tanaka, EM. (2018)

Regenerating tissues.

Science. 360(6387):374-375
Oliveira, CR., Lemaitre, R., Murawala, P., Tazaki, A., Drechsel, DN., Tanaka, EM. (2018)

Pseudotyped baculovirus is an effective gene expression tool for studying molecular function during axolotl limb regeneration.

Dev Biol. 433(2):262-275
Ebner, P., Poetsch, I., Deszcz, L., Hoffmann, T., Zuber, J., Ikeda, F. (2018)

The IAP family member BRUCE regulates autophagosome-lysosome fusion.

Nat Commun. 9(1):599
Hellerschmied, D., Roessler, M., Lehner, A., Gazda, L., Stejskal, K., Imre, R., Mechtler, K., Dammermann, A., Clausen, T. (2018)

UFD-2 is an adaptor-assisted E3 ligase targeting unfolded proteins.

Nat Commun. 9(1):484
Fujimura, N., Kuzelova, A., Ebert, A., Strnad, H., Lachova, J., Machon, O., Busslinger, M., Kozmik, Z. (2018)

Polycomb repression complex 2 is required for the maintenance of retinal progenitor cells and balanced retinal differentiation.

Dev Biol. 433(1):47-60
Skocek, O., Nöbauer, T., Weilguny, L., Traub, FM., Xia, CN., Molodtsov, MI., Grama, A., Yamagata, M., Aharoni, D., Cox, DD., Golshani, P., Vaziri, A. (2018)

Author Correction: High-speed volumetric imaging of neuronal activity in freely moving rodents.

Nat Methods. 15(6):469
Nowoshilow, S., Schloissnig, S., Fei, JF., Dahl, A., Pang, AWC., Pippel, M., Winkler, S., Hastie, AR., Young, G., Roscito, JG., Falcon, F., Knapp, D., Powell, S., Cruz, A., Cao, H., Habermann, B., Hiller, M., Tanaka, EM., Myers, EW. (2018)

Author Correction: The axolotl genome and the evolution of key tissue formation regulators.

Nature. 559(7712):E2
Orbán-Németh, Z., Beveridge, R., Hollenstein, DM., Rampler, E., Stranzl, T., Hudecz, O., Doblmann, J., Schlögelhofer, P., Mechtler, K. (2018)

Author Correction: Structural prediction of protein models using distance restraints derived from cross-linking mass spectrometry data.

Nat Protoc. 13(7):1724
Gstrein, T., Edwards, A., Přistoupilová, A., Leca, I., Breuss, M., Pilat-Carotta, S., Hansen, AH., Tripathy, R., Traunbauer, AK., Hochstoeger, T., Rosoklija, G., Repic, M., Landler, L., Stránecký, V., Dürnberger, G., Keane, TM., Zuber, J., Adams, DJ., Flint, J., Honzik, T., Gut, M., Beltran, S., Mechtler, K., Sherr, E., Kmoch, S., Gut, I., Keays, DA. (2018)

Publisher Correction: Mutations in Vps15 perturb neuronal migration in mice and are associated with neurodevelopmental disease in humans.

Nat Neurosci. 21(8):1139
Rojo Romanos, T., Ng, L., Pocock, R. (2018)

Behavioral Assays to Study Oxygen and Carbon Dioxide Sensing in Caenorhabditis elegans.

Bio Protoc. 8(1)
Palau, A., Garz, AK., Diesch, J., Zwick, A., Malinverni, R., Valero, V., Lappin, K., Casquero, R., Lennartsson, A., Zuber, J., Navarro, T., Mills, KI., Götze, KS., Buschbeck, M. (2017)

Polycomb protein RING1A limits hematopoietic differentiation in myelodysplastic syndromes.

Oncotarget. 8(70):115002-115017
Jacamo, R., Davis, RE., Ling, X., Sonnylal, S., Wang, Z., Ma, W., Zhang, M., Ruvolo, P., Ruvolo, V., Wang, RY., McQueen, T., Lowe, S., Zuber, J., Kornblau, SM., Konopleva, M., Andreeff, M. (2017)

Tumor Trp53 status and genotype affect the bone marrow microenvironment in acute myeloid leukemia.

Oncotarget. 8(48):83354-83369
Riley, NM., Hebert, AS., Dürnberger, G., Stanek, F., Mechtler, K., Westphall, MS., Coon, JJ. (2017)

Phosphoproteomics with Activated Ion Electron Transfer Dissociation.

Anal Chem. 89(12):6367-6376
Song, M., Sukovich, DJ., Ciccarelli, L., Mayr, J., Fernandez-Rodriguez, J., Mirsky, EA., Tucker, AC., Gordon, DB., Marlovits, TC., Voigt, CA. (2017)

Control of type III protein secretion using a minimal genetic system.

Nat Commun. 8:14737
Overlack, K., Bange, T., Weissmann, F., Faesen, AC., Maffini, S., Primorac, I., Müller, F., Peters, JM., Musacchio, A. (2017)

BubR1 Promotes Bub3-Dependent APC/C Inhibition during Spindle Assembly Checkpoint Signaling.

Curr Biol. 27(19):2915-2927.e7
Breuss, MW., Leca, I., Gstrein, T., Hansen, AH., Keays, DA. (2017)

Tubulins and brain development - The origins of functional specification.

Mol Cell Neurosci. 84:58-67
Nimpf, S., Malkemper, EP., Lauwers, M., Ushakova, L., Nordmann, G., Wenninger-Weinzierl, A., Burkard, TR., Jacob, S., Heuser, T., Resch, GP., Keays, DA. (2017)

Subcellular analysis of pigeon hair cells implicates vesicular trafficking in cuticulosome formation and maintenance.

Elife. 6
Rogers, KW., Lord, ND., Gagnon, JA., Pauli, A., Zimmerman, S., Aksel, DC., Reyon, D., Tsai, SQ., Joung, JK., Schier, AF. (2017)

Nodal patterning without Lefty inhibitory feedback is functional but fragile.

Elife. 6
Ouyang, M., Li, X., Zhao, S., Pu, H., Shen, J., Adam, Z., Clausen, T., Zhang, L. (2017)

The crystal structure of Deg9 reveals a novel octameric-type HtrA protease.

Nat Plants. 3(12):973-982
Fei, JF., Schuez, M., Knapp, D., Taniguchi, Y., Drechsel, DN., Tanaka, EM. (2017)

Efficient gene knockin in axolotl and its use to test the role of satellite cells in limb regeneration.

Proc Natl Acad Sci U S A. 114(47):12501-12506
Norris, ML., Pauli, A., Gagnon, JA., Lord, ND., Rogers, KW., Mosimann, C., Zon, LI., Schier, AF. (2017)

Toddler signaling regulates mesodermal cell migration downstream of Nodal signaling.

Elife. 6
Conti, V., Carabalona, A., Pallesi-Pocachard, E., Leventer, RJ., Schaller, F., Parrini, E., Deparis, AA., Watrin, F., Buhler, E., Novara, F., Lise, S., Pagnamenta, AT., Kini, U., Taylor, JC., Zuffardi, O., Represa, A., Keays, DA., Guerrini, R., Falace, A., Cardoso, C. (2017)

A Novel Strategy Combining Array-CGH, Whole-exome Sequencing and In Utero Electroporation in Rodents to Identify Causative Genes for Brain Malformations.

J Vis Exp. (130)
Shodhan, A., Novatchkova, M., Loidl, J. (2017)

BIME2, a novel gene required for interhomolog meiotic recombination in the protist model organism Tetrahymena.

Chromosome Res. 25(3-4):291-298
Beckham, KS., Ciccarelli, L., Bunduc, CM., Mertens, HD., Ummels, R., Lugmayr, W., Mayr, J., Rettel, M., Savitski, MM., Svergun, DI., Bitter, W., Wilmanns, M., Marlovits, TC., Parret, AH., Houben, EN. (2017)

Structure of the mycobacterial ESX-5 type VII secretion system membrane complex by single-particle analysis.

Nat Microbiol. 2:17047
Taubenschmid, J., Stadlmann, J., Jost, M., Klokk, TI., Rillahan, CD., Leibbrandt, A., Mechtler, K., Paulson, JC., Jude, J., Zuber, J., Sandvig, K., Elling, U., Marquardt, T., Thiel, C., Koerner, C., Penninger, JM. (2017)

A vital sugar code for ricin toxicity.

Cell Res. 27(11):1351-1364
Adams, FF., Heckl, D., Hoffmann, T., Talbot, SR., Kloos, A., Thol, F., Heuser, M., Zuber, J., Schambach, A., Schwarzer, A. (2017)

An optimized lentiviral vector system for conditional RNAi and efficient cloning of microRNA embedded short hairpin RNA libraries.

Biomaterials. 139:102-115
Freyer, L., Hsu, CW., Nowotschin, S., Pauli, A., Ishida, J., Kuba, K., Fukamizu, A., Schier, AF., Hoodless, PA., Dickinson, ME., Hadjantonakis, AK. (2017)

Loss of Apela Peptide in Mice Causes Low Penetrance Embryonic Lethality and Defects in Early Mesodermal Derivatives.

Cell Rep. 20(9):2116-2130
Andergassen, D., Dotter, CP., Wenzel, D., Sigl, V., Bammer, PC., Muckenhuber, M., Mayer, D., Kulinski, TM., Theussl, HC., Penninger, JM., Bock, C., Barlow, DP., Pauler, FM., Hudson, QJ. (2017)

Mapping the mouse Allelome reveals tissue-specific regulation of allelic expression.

Elife. 6
Jang, H., Levy, S., Flavell, SW., Mende, F., Latham, R., Zimmer, M., Bargmann, CI. (2017)

Dissection of neuronal gap junction circuits that regulate social behavior in Caenorhabditis elegans.

Proc Natl Acad Sci U S A. 114(7):E1263-E1272
Gu, YF., Cohn, S., Christie, A., McKenzie, T., Wolff, N., Do, QN., Madhuranthakam, AJ., Pedrosa, I., Wang, T., Dey, A., Busslinger, M., Xie, XJ., Hammer, RE., McKay, RM., Kapur, P., Brugarolas, J. (2017)

Modeling Renal Cell Carcinoma in Mice: Bap1 and Pbrm1 Inactivation Drive Tumor Grade.

Cancer Discov. 7(8):900-917
van der Lelij, P., Lieb, S., Jude, J., Wutz, G., Santos, CP., Falkenberg, K., Schlattl, A., Ban, J., Schwentner, R., Hoffmann, T., Kovar, H., Real, FX., Waldman, T., Pearson, MA., Kraut, N., Peters, JM., Zuber, J., Petronczki, M. (2017)

Synthetic lethality between the cohesin subunits STAG1 and STAG2 in diverse cancer contexts.

Elife. 6
Russell, JJ., Theriot, JA., Sood, P., Marshall, WF., Landweber, LF., Fritz-Laylin, L., Polka, JK., Oliferenko, S., Gerbich, T., Gladfelter, A., Umen, J., Bezanilla, M., Lancaster, MA., He, S., Gibson, MC., Goldstein, B., Tanaka, EM., Hu, CK., Brunet, A. (2017)

Non-model model organisms.

BMC Biol. 15(1):55
Pajenda, S., Mechtler, K., Wagner, L. (2017)

Urinary neprilysin in the critically ill patient.

BMC Nephrol. 18(1):172
Elling, U., Wimmer, RA., Leibbrandt, A., Burkard, T., Michlits, G., Leopoldi, A., Micheler, T., Abdeen, D., Zhuk, S., Aspalter, IM., Handl, C., Liebergesell, J., Hubmann, M., Husa, AM., Kinzer, M., Schuller, N., Wetzel, E., van de Loo, N., Martinez, JAZ., Estoppey, D., Riedl, R., Yang, F., Fu, B., Dechat, T., Ivics, Z., Agu, CA., Bell, O., Blaas, D., Gerhardt, H., Hoepfner, D., Stark, A., Penninger, JM. (2017)

A reversible haploid mouse embryonic stem cell biobank resource for functional genomics.

Nature. 550(7674):114-118
Stadlmann, J., Taubenschmid, J., Wenzel, D., Gattinger, A., Dürnberger, G., Dusberger, F., Elling, U., Mach, L., Mechtler, K., Penninger, JM. (2017)

Comparative glycoproteomics of stem cells identifies new players in ricin toxicity.

Nature. 549(7673):538-542
MacPherson, S., Horkoff, M., Gravel, C., Hoffmann, T., Zuber, J., Lum, JJ. (2017)

STAT3 Regulation of Citrate Synthase Is Essential during the Initiation of Lymphocyte Cell Growth.

Cell Rep. 19(5):910-918
Willems, S., Bouyssié, D., David, M., Locard-Paulet, M., Mechtler, K., Schwämmle, V., Uszkoreit, J., Vaudel, M., Dorfer, V. (2017)

Proceedings of the EuBIC Winter School 2017.

J Proteomics. 161:78-80
Ishihara, K., Ranga, A., Lutolf, MP., Tanaka, EM., Meinhardt, A. (2017)

Reconstitution of a Patterned Neural Tube from Single Mouse Embryonic Stem Cells.

Methods Mol Biol. 1597:43-55
Nichols, ALA., Eichler, T., Latham, R., Zimmer, M. (2017)

A global brain state underlies C. elegans sleep behavior.

Science. 356(6344)
Ocaña, OH., Coskun, H., Minguillón, C., Murawala, P., Tanaka, EM., Galcerán, J., Muñoz-Chápuli, R., Nieto, MA. (2017)

A right-handed signalling pathway drives heart looping in vertebrates.

Nature. 549(7670):86-90
Nimpf, S., Keays, DA. (2017)

Is magnetogenetics the new optogenetics?

EMBO J. 36(12):1643-1646
Reiter, F., Wienerroither, S., Stark, A. (2017)

Combinatorial function of transcription factors and cofactors.

Curr Opin Genet Dev. 43:73-81
Gassler, J., Brandão, HB., Imakaev, M., Flyamer, IM., Ladstätter, S., Bickmore, WA., Peters, JM., Mirny, LA., Tachibana, K. (2017)

A mechanism of cohesin-dependent loop extrusion organizes zygotic genome architecture.

EMBO J. 36(24):3600-3618
Wutz, G., Várnai, C., Nagasaka, K., Cisneros, DA., Stocsits, RR., Tang, W., Schoenfelder, S., Jessberger, G., Muhar, M., Hossain, MJ., Walther, N., Koch, B., Kueblbeck, M., Ellenberg, J., Zuber, J., Fraser, P., Peters, JM. (2017)

Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.

EMBO J. 36(24):3573-3599
Michlits, G., Hubmann, M., Wu, SH., Vainorius, G., Budusan, E., Zhuk, S., Burkard, TR., Novatchkova, M., Aichinger, M., Lu, Y., Reece-Hoyes, J., Nitsch, R., Schramek, D., Hoepfner, D., Elling, U. (2017)

CRISPR-UMI: single-cell lineage tracing of pooled CRISPR-Cas9 screens.

Nat Methods. 14(12):1191-1197
Herzog, VA., Reichholf, B., Neumann, T., Rescheneder, P., Bhat, P., Burkard, TR., Wlotzka, W., von Haeseler, A., Zuber, J., Ameres, SL. (2017)

Thiol-linked alkylation of RNA to assess expression dynamics.

Nat Methods. 14(12):1198-1204
Breuss, MW., Hansen, AH., Landler, L., Keays, DA. (2017)

Brain-specific knockin of the pathogenic Tubb5 E401K allele causes defects in motor coordination and prepulse inhibition.

Behav Brain Res. 323:47-55
Miller, TE., Liau, BB., Wallace, LC., Morton, AR., Xie, Q., Dixit, D., Factor, DC., Kim, LJY., Morrow, JJ., Wu, Q., Mack, SC., Hubert, CG., Gillespie, SM., Flavahan, WA., Hoffmann, T., Thummalapalli, R., Hemann, MT., Paddison, PJ., Horbinski, CM., Zuber, J., Scacheri, PC., Bernstein, BE., Tesar, PJ., Rich, JN. (2017)

Transcription elongation factors represent in vivo cancer dependencies in glioblastoma.

Nature. 547(7663):355-359
Aarts, M., Georgilis, A., Beniazza, M., Beolchi, P., Banito, A., Carroll, T., Kulisic, M., Kaemena, DF., Dharmalingam, G., Martin, N., Reik, W., Zuber, J., Kaji, K., Chandra, T., Gil, J. (2017)

Coupling shRNA screens with single-cell RNA-seq identifies a dual role for mTOR in reprogramming-induced senescence.

Genes Dev. 31(20):2085-2098
Rao, S., Sigl, V., Wimmer, RA., Novatchkova, M., Jais, A., Wagner, G., Handschuh, S., Uribesalgo, I., Hagelkruys, A., Kozieradzki, I., Tortola, L., Nitsch, R., Cronin, SJ., Orthofer, M., Branstetter, D., Canon, J., Rossi, J., D'Arcangelo, M., Botling, J., Micke, P., Fleur, L., Edlund, K., Bergqvist, M., Ekman, S., Lendl, T., Popper, H., Takayanagi, H., Kenner, L., Hirsch, FR., Dougall, W., Penninger, JM. (2017)

RANK rewires energy homeostasis in lung cancer cells and drives primary lung cancer.

Genes Dev. 31(20):2099-2112
Hogg, SJ., Vervoort, SJ., Deswal, S., Ott, CJ., Li, J., Cluse, LA., Beavis, PA., Darcy, PK., Martin, BP., Spencer, A., Traunbauer, AK., Sadovnik, I., Bauer, K., Valent, P., Bradner, JE., Zuber, J., Shortt, J., Johnstone, RW. (2017)

BET-Bromodomain Inhibitors Engage the Host Immune System and Regulate Expression of the Immune Checkpoint Ligand PD-L1.

Cell Rep. 18(9):2162-2174
Nordmann, GC., Hochstoeger, T., Keays, DA. (2017)

Magnetoreception-A sense without a receptor.

PLoS Biol. 15(10):e2003234
Catarino, RR., Neumayr, C., Stark, A. (2017)

Promoting transcription over long distances.

Nat Genet. 49(7):972-973
Doblas, VG., Smakowska-Luzan, E., Fujita, S., Alassimone, J., Barberon, M., Madalinski, M., Belkhadir, Y., Geldner, N. (2017)

Root diffusion barrier control by a vasculature-derived peptide binding to the SGN3 receptor.

Science. 355(6322):280-284
Stowers, JR., Hofbauer, M., Bastien, R., Griessner, J., Higgins, P., Farooqui, S., Fischer, RM., Nowikovsky, K., Haubensak, W., Couzin, ID., Tessmar-Raible, K., Straw, AD. (2017)

Virtual reality for freely moving animals.

Nat Methods. 14(10):995-1002
Alberti, C., Cochella, L. (2017)

A framework for understanding the roles of miRNAs in animal development.

Development. 144(14):2548-2559
Shodhan, A., Kataoka, K., Mochizuki, K., Novatchkova, M., Loidl, J. (2017)

A Zip3-like protein plays a role in crossover formation in the SC-less meiosis of the protist Tetrahymena.

Mol Biol Cell. 28(6):825-833
Breuss, MW., Nguyen, T., Srivatsan, A., Leca, I., Tian, G., Fritz, T., Hansen, AH., Musaev, D., McEvoy-Venneri, J., James, KN., Rosti, RO., Scott, E., Tan, U., Kolodner, RD., Cowan, NJ., Keays, DA., Gleeson, JG. (2017)

Uner Tan syndrome caused by a homozygous TUBB2B mutation affecting microtubule stability.

Hum Mol Genet. 26(2):258-269
Hein, N., Cameron, DP., Hannan, KM., Nguyen, NN., Fong, CY., Sornkom, J., Wall, M., Pavy, M., Cullinane, C., Diesch, J., Devlin, JR., George, AJ., Sanij, E., Quin, J., Poortinga, G., Verbrugge, I., Baker, A., Drygin, D., Harrison, SJ., Rozario, JD., Powell, JA., Pitson, SM., Zuber, J., Johnstone, RW., Dawson, MA., Guthridge, MA., Wei, A., McArthur, GA., Pearson, RB., Hannan, RD. (2017)

Inhibition of Pol I transcription treats murine and human AML by targeting the leukemia-initiating cell population.

Blood. 129(21):2882-2895
Samwer, M., Schneider, MWG., Hoefler, R., Schmalhorst, PS., Jude, JG., Zuber, J., Gerlich, DW. (2017)

DNA Cross-Bridging Shapes a Single Nucleus from a Set of Mitotic Chromosomes.

Cell. 170(5):956-972.e23
Greiner, G., Witzeneder, N., Berger, A., Schmetterer, K., Eisenwort, G., Schiefer, AI., Roos, S., Popow-Kraupp, T., Müllauer, L., Zuber, J., Sexl, V., Kenner, L., Sperr, WR., Valent, P., Mayerhofer, M., Hoermann, G. (2017)

CCL2 is a KIT D816V-dependent modulator of the bone marrow microenvironment in systemic mastocytosis.

Blood. 129(3):371-382
Nöbauer, T., Skocek, O., Pernía-Andrade, AJ., Weilguny, L., Traub, FM., Molodtsov, MI., Vaziri, A. (2017)

Video rate volumetric Ca2+ imaging across cortex using seeded iterative demixing (SID) microscopy.

Nat Methods. 14(8):811-818
Busslinger, GA., Stocsits, RR., van der Lelij, P., Axelsson, E., Tedeschi, A., Galjart, N., Peters, JM. (2017)

Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl.

Nature. 544(7651):503-507
Valerio, DG., Xu, H., Chen, CW., Hoshii, T., Eisold, ME., Delaney, C., Cusan, M., Deshpande, AJ., Huang, CH., Lujambio, A., Zheng, YG., Zuber, J., Pandita, TK., Lowe, SW., Armstrong, SA. (2017)

Histone Acetyltransferase Activity of MOF Is Required for MLL-AF9 Leukemogenesis.

Cancer Res. 77(7):1753-1762
Smeenk, L., Fischer, M., Jurado, S., Jaritz, M., Azaryan, A., Werner, B., Roth, M., Zuber, J., Stanulla, M., den Boer, ML., Mullighan, CG., Strehl, S., Busslinger, M. (2017)

Molecular role of the PAX5-ETV6 oncoprotein in promoting B-cell acute lymphoblastic leukemia.

EMBO J. 36(6):718-735
Kreslavsky, T., Vilagos, B., Tagoh, H., Poliakova, DK., Schwickert, TA., Wöhner, M., Jaritz, M., Weiss, S., Taneja, R., Rossner, MJ., Busslinger, M. (2017)

Essential role for the transcription factor Bhlhe41 in regulating the development, self-renewal and BCR repertoire of B-1a cells.

Nat Immunol. 18(4):442-455
Pelossof, R., Fairchild, L., Huang, CH., Widmer, C., Sreedharan, VT., Sinha, N., Lai, DY., Guan, Y., Premsrirut, PK., Tschaharganeh, DF., Hoffmann, T., Thapar, V., Xiang, Q., Garippa, RJ., Rätsch, G., Zuber, J., Lowe, SW., Leslie, CS., Fellmann, C. (2017)

Prediction of potent shRNAs with a sequential classification algorithm.

Nat Biotechnol. 35(4):350-353
Arnold, CD., Zabidi, MA., Pagani, M., Rath, M., Schernhuber, K., Kazmar, T., Stark, A. (2017)

Genome-wide assessment of sequence-intrinsic enhancer responsiveness at single-base-pair resolution.

Nat Biotechnol. 35(2):136-144
Housden, BE., Muhar, M., Gemberling, M., Gersbach, CA., Stainier, DY., Seydoux, G., Mohr, SE., Zuber, J., Perrimon, N. (2017)

Loss-of-function genetic tools for animal models: cross-species and cross-platform differences.

Nat Rev Genet. 18(1):24-40
Franz, A., Shlyueva, D., Brunner, E., Stark, A., Basler, K. (2017)

Probing the canonicity of the Wnt/Wingless signaling pathway.

PLoS Genet. 13(4):e1006700
Pagnamenta, AT., Howard, MF., Knight, SJ., Keays, DA., Quaghebeur, G., Taylor, JC., Kini, U. (2016)

Activation of an exonic splice-donor site in exon 30 of CDK5RAP2 in a patient with severe microcephaly and pigmentary abnormalities.

Clin Case Rep. 4(10):952-956
Stepien, BK., Oppitz, C., Gerlach, D., Dag, U., Novatchkova, M., Krüttner, S., Stark, A., Keleman, K. (2016)

RNA-binding profiles of Drosophila CPEB proteins Orb and Orb2.

Proc Natl Acad Sci U S A. 113(45):E7030-E7038
Camurdanoglu, BZ., Hrovat, C., Dürnberger, G., Madalinski, M., Mechtler, K., Herbst, R. (2016)

MuSK Kinase Activity is Modulated By A Serine Phosphorylation Site in The Kinase Loop.

Sci Rep. 6:33583
Rampler, E., Stranzl, T., Orban-Nemeth, Z., Hollenstein, DM., Hudecz, O., Schlögelhofer, P., Mechtler, K. (2016)

Correction to "Comprehensive Cross-Linking Mass Spectrometry Reveals Parallel Orientation and Flexible Conformations of Plant HOP2-MND1".

J Proteome Res. 15(5):1732
Kollmann, K., Heller, G., Schneckenleithner, C., Warsch, W., Scheicher, R., Ott, RG., Schäfer, M., Fajmann, S., Schlederer, M., Schiefer, AI., Reichart, U., Mayerhofer, M., Hoeller, C., Zöchbauer-Müller, S., Kerjaschki, D., Bock, C., Kenner, L., Hoefler, G., Freissmuth, M., Green, AR., Moriggl, R., Busslinger, M., Malumbres, M., Sexl, V. (2016)

A Kinase-Independent Function of CDK6 Links the Cell Cycle to Tumor Angiogenesis.

Cancer Cell. 30(2):359-360
Suskiewicz, MJ., Clausen, T. (2016)

Chemical Biology Interrogates Protein Arginine Phosphorylation.

Cell Chem Biol. 23(8):888-90
Reddien, PW., Tanaka, EM. (2016)

Editorial overview: Cell reprogramming, regeneration and repair.

Curr Opin Genet Dev. 40:iv-vi
Hons, MT., Huis In 't Veld, PJ., Kaesler, J., Rombaut, P., Schleiffer, A., Herzog, F., Stark, H., Peters, JM. (2016)

Topology and structure of an engineered human cohesin complex bound to Pds5B.

Nat Commun. 7:12523
Tinsley, JN., Molodtsov, MI., Prevedel, R., Wartmann, D., Espigulé-Pons, J., Lauwers, M., Vaziri, A. (2016)

Direct detection of a single photon by humans.

Nat Commun. 7:12172
Muerdter, F., Stark, A. (2016)

Gene Regulation: Activation through Space.

Curr Biol. 26(19):R895-R898
Nowacka, JD., Baumgartner, C., Pelorosso, C., Roth, M., Zuber, J., Baccarini, M. (2016)

MEK1 is required for the development of NRAS-driven leukemia.

Oncotarget. 7(49):80113-80130
Gallego, LD., Ghodgaonkar Steger, M., Polyansky, AA., Schubert, T., Zagrovic, B., Zheng, N., Clausen, T., Herzog, F., Köhler, A. (2016)

Structural mechanism for the recognition and ubiquitination of a single nucleosome residue by Rad6-Bre1.

Proc Natl Acad Sci U S A. 113(38):10553-8
Sigl, V., Owusu-Boaitey, K., Joshi, PA., Kavirayani, A., Wirnsberger, G., Novatchkova, M., Kozieradzki, I., Schramek, D., Edokobi, N., Hersl, J., Sampson, A., Odai-Afotey, A., Lazaro, C., Gonzalez-Suarez, E., Pujana, MA., Cimba, F., Heyn, H., Vidal, E., Cruickshank, J., Berman, H., Sarao, R., Ticevic, M., Uribesalgo, I., Tortola, L., Rao, S., Tan, Y., Pfeiler, G., Lee, EY., Bago-Horvath, Z., Kenner, L., Popper, H., Singer, C., Khokha, R., Jones, LP., Penninger, JM. (2016)

RANKL/RANK control Brca1 mutation- .

Cell Res. 26(7):761-74
Pekgöz Altunkaya, G., Malvezzi, F., Demianova, Z., Zimniak, T., Litos, G., Weissmann, F., Mechtler, K., Herzog, F., Westermann, S. (2016)

CCAN Assembly Configures Composite Binding Interfaces to Promote Cross-Linking of Ndc80 Complexes at the Kinetochore.

Curr Biol. 26(17):2370-8
Panser, K., Tirian, L., Schulze, F., Villalba, S., Jefferis, GSXE., Bühler, K., Straw, AD. (2016)

Automatic Segmentation of Drosophila Neural Compartments Using GAL4 Expression Data Reveals Novel Visual Pathways.

Curr Biol. 26(15):1943-1954
Wissel, S., Kieser, A., Yasugi, T., Duchek, P., Roitinger, E., Gokcezade, J., Steinmann, V., Gaul, U., Mechtler, K., Förstemann, K., Knoblich, JA., Neumüller, RA. (2016)

A Combination of CRISPR/Cas9 and Standardized RNAi as a Versatile Platform for the Characterization of Gene Function.

G3 (Bethesda). 6(8):2467-78
Meshcheryakova, A., Svoboda, M., Tahir, A., Köfeler, HC., Triebl, A., Mungenast, F., Heinze, G., Gerner, C., Zimmermann, P., Jaritz, M., Mechtcheriakova, D. (2016)

Exploring the role of sphingolipid machinery during the epithelial to mesenchymal transition program using an integrative approach.

Oncotarget. 7(16):22295-323
Adams, WC., Chen, YH., Kratchmarov, R., Yen, B., Nish, SA., Lin, WW., Rothman, NJ., Luchsinger, LL., Klein, U., Busslinger, M., Rathmell, JC., Snoeck, HW., Reiner, SL. (2016)

Anabolism-Associated Mitochondrial Stasis Driving Lymphocyte Differentiation over Self-Renewal.

Cell Rep. 17(12):3142-3152
Hums, I., Riedl, J., Mende, F., Kato, S., Kaplan, HS., Latham, R., Sonntag, M., Traunmüller, L., Zimmer, M. (2016)

Regulation of two motor patterns enables the gradual adjustment of locomotion strategy in Caenorhabditis elegans.

Elife. 5
Zabidi, MA., Stark, A. (2016)

Regulatory Enhancer-Core-Promoter Communication via Transcription Factors and Cofactors.

Trends Genet. 32(12):801-814
Heuck, A., Schitter-Sollner, S., Suskiewicz, MJ., Kurzbauer, R., Kley, J., Schleiffer, A., Rombaut, P., Herzog, F., Clausen, T. (2016)

Structural basis for the disaggregase activity and regulation of Hsp104.

Elife. 5
Huis In 't Veld, PJ., Jeganathan, S., Petrovic, A., Singh, P., John, J., Krenn, V., Weissmann, F., Bange, T., Musacchio, A. (2016)

Molecular basis of outer kinetochore assembly on CENP-T.

Elife. 5
Haas, MA., Ngo, L., Li, SS., Schleich, S., Qu, Z., Vanyai, HK., Cullen, HD., Cardona-Alberich, A., Gladwyn-Ng, IE., Pagnamenta, AT., Taylor, JC., Stewart, H., Kini, U., Duncan, KE., Teleman, AA., Keays, DA., Heng, JI. (2016)

De Novo Mutations in DENR Disrupt Neuronal Development and Link Congenital Neurological Disorders to Faulty mRNA Translation Re-initiation.

Cell Rep. 15(10):2251-2265
Broix, L., Jagline, H., Ivanova, E., Schmucker, S., Drouot, N., Clayton-Smith, J., Pagnamenta, AT., Metcalfe, KA., Isidor, B., Louvier, UW., Poduri, A., Taylor, JC., Tilly, P., Poirier, K., Saillour, Y., Lebrun, N., Stemmelen, T., Rudolf, G., Muraca, G., Saintpierre, B., Elmorjani, A., Moïse, M., Weirauch, NB., Guerrini, R., Boland, A., Olaso, R., Masson, C., Tripathy, R., Keays, D., Beldjord, C., Nguyen, L., Godin, J., Kini, U., Nischké, P., Deleuze, JF., Bahi-Buisson, N., Sumara, I., Hinckelmann, MV., Chelly, J. (2016)

Mutations in the HECT domain of NEDD4L lead to AKT-mTOR pathway deregulation and cause periventricular nodular heterotopia.

Nat Genet. 48(11):1349-1358
Asaoka, T., Almagro, J., Ehrhardt, C., Tsai, I., Schleiffer, A., Deszcz, L., Junttila, S., Ringrose, L., Mechtler, K., Kavirayani, A., Gyenesei, A., Hofmann, K., Duchek, P., Rittinger, K., Ikeda, F. (2016)

Linear ubiquitination by LUBEL has a role in Drosophila heat stress response.

EMBO Rep. 17(11):1624-1640
Houben, A., Kostanova-Poliakova, D., Weissenböck, M., Graf, J., Teufel, S., von der Mark, K., Hartmann, C. (2016)

β-catenin activity in late hypertrophic chondrocytes locally orchestrates osteoblastogenesis and osteoclastogenesis.

Development. 143(20):3826-3838
Pasquarella, A., Ebert, A., Pereira de Almeida, G., Hinterberger, M., Kazerani, M., Nuber, A., Ellwart, J., Klein, L., Busslinger, M., Schotta, G. (2016)

Retrotransposon derepression leads to activation of the unfolded protein response and apoptosis in pro-B cells.

Development. 143(10):1788-99
Pang, SH., Minnich, M., Gangatirkar, P., Zheng, Z., Ebert, A., Song, G., Dickins, RA., Corcoran, LM., Mullighan, CG., Busslinger, M., Huntington, ND., Nutt, SL., Carotta, S. (2016)

PU.1 cooperates with IRF4 and IRF8 to suppress pre-B-cell leukemia.

Leukemia. 30(6):1375-87
Yamaguchi, M., VanderLinden, R., Weissmann, F., Qiao, R., Dube, P., Brown, NG., Haselbach, D., Zhang, W., Sidhu, SS., Peters, JM., Stark, H., Schulman, BA. (2016)

Cryo-EM of Mitotic Checkpoint Complex-Bound APC/C Reveals Reciprocal and Conformational Regulation of Ubiquitin Ligation.

Mol Cell. 63(4):593-607
Rickels, R., Hu, D., Collings, CK., Woodfin, AR., Piunti, A., Mohan, M., Herz, HM., Kvon, E., Shilatifard, A. (2016)

An Evolutionary Conserved Epigenetic Mark of Polycomb Response Elements Implemented by Trx/MLL/COMPASS.

Mol Cell. 63(2):318-328
Kaufmann, T., Kukolj, E., Brachner, A., Beltzung, E., Bruno, M., Kostrhon, S., Opravil, S., Hudecz, O., Mechtler, K., Warren, G., Slade, D. (2016)

SIRT2 regulates nuclear envelope reassembly through ANKLE2 deacetylation.

J Cell Sci. 129(24):4607-4621
Wöhner, M., Tagoh, H., Bilic, I., Jaritz, M., Poliakova, DK., Fischer, M., Busslinger, M. (2016)

Molecular functions of the transcription factors E2A and E2-2 in controlling germinal center B cell and plasma cell development.

J Exp Med. 213(7):1201-21
Davidson, IF., Goetz, D., Zaczek, MP., Molodtsov, MI., Huis In 't Veld, PJ., Weissmann, F., Litos, G., Cisneros, DA., Ocampo-Hafalla, M., Ladurner, R., Uhlmann, F., Vaziri, A., Peters, JM. (2016)

Rapid movement and transcriptional re-localization of human cohesin on DNA.

EMBO J. 35(24):2671-2685
Lange, L., Pagnamenta, AT., Lise, S., Clasper, S., Stewart, H., Akha, ES., Quaghebeur, G., Knight, SJ., Keays, DA., Taylor, JC., Kini, U. (2016)

A de novo frameshift in HNRNPK causing a Kabuki-like syndrome with nodular heterotopia.

Clin Genet. 90(3):258-62
Reimão-Pinto, MM., Manzenreither, RA., Burkard, TR., Sledz, P., Jinek, M., Mechtler, K., Ameres, SL. (2016)

Molecular basis for cytoplasmic RNA surveillance by uridylation-triggered decay in Drosophila.

EMBO J. 35(22):2417-2434
Drexel, T., Mahofsky, K., Latham, R., Zimmer, M., Cochella, L. (2016)

Neuron type-specific miRNA represses two broadly expressed genes to modulate an avoidance behavior in C. elegans.

Genes Dev. 30(18):2042-2047
Tordella, L., Khan, S., Hohmeyer, A., Banito, A., Klotz, S., Raguz, S., Martin, N., Dhamarlingam, G., Carroll, T., González Meljem, JM., Deswal, S., Martínez-Barbera, JP., García-Escudero, R., Zuber, J., Zender, L., Gil, J. (2016)

SWI/SNF regulates a transcriptional program that induces senescence to prevent liver cancer.

Genes Dev. 30(19):2187-2198
Dietsche, T., Tesfazgi Mebrhatu, M., Brunner, MJ., Abrusci, P., Yan, J., Franz-Wachtel, M., Schärfe, C., Zilkenat, S., Grin, I., Galán, JE., Kohlbacher, O., Lea, S., Macek, B., Marlovits, TC., Robinson, CV., Wagner, S. (2016)

Structural and Functional Characterization of the Bacterial Type III Secretion Export Apparatus.

PLoS Pathog. 12(12):e1006071
Leong, YA., Chen, Y., Ong, HS., Wu, D., Man, K., Deleage, C., Minnich, M., Meckiff, BJ., Wei, Y., Hou, Z., Zotos, D., Fenix, KA., Atnerkar, A., Preston, S., Chipman, JG., Beilman, GJ., Allison, CC., Sun, L., Wang, P., Xu, J., Toe, JG., Lu, HK., Tao, Y., Palendira, U., Dent, AL., Landay, AL., Pellegrini, M., Comerford, I., McColl, SR., Schacker, TW., Long, HM., Estes, JD., Busslinger, M., Belz, GT., Lewin, SR., Kallies, A., Yu, D. (2016)

CXCR5(+) follicular cytotoxic T cells control viral infection in B cell follicles.

Nat Immunol. 17(10):1187-96
Prevedel, R., Verhoef, AJ., Pernía-Andrade, AJ., Weisenburger, S., Huang, BS., Nöbauer, T., Fernández, A., Delcour, JE., Golshani, P., Baltuska, A., Vaziri, A. (2016)

Fast volumetric calcium imaging across multiple cortical layers using sculpted light.

Nat Methods. 13(12):1021-1028
Sdelci, S., Lardeau, CH., Tallant, C., Klepsch, F., Klaiber, B., Bennett, J., Rathert, P., Schuster, M., Penz, T., Fedorov, O., Superti-Furga, G., Bock, C., Zuber, J., Huber, KV., Knapp, S., Müller, S., Kubicek, S. (2016)

Mapping the chemical chromatin reactivation landscape identifies BRD4-TAF1 cross-talk.

Nat Chem Biol. 12(7):504-10
Cabrera-Quio, LE., Herberg, S., Pauli, A. (2016)

Decoding sORF translation - from small proteins to gene regulation.

RNA Biol. 13(11):1051-1059
Smaldone, G., Pirone, L., Pedone, E., Marlovits, T., Vitagliano, L., Ciccarelli, L. (2016)

The BTB domains of the potassium channel tetramerization domain proteins prevalently assume pentameric states.

FEBS Lett. 590(11):1663-71
Polakova, S., Molnarova, L., Hyppa, RW., Benko, Z., Misova, I., Schleiffer, A., Smith, GR., Gregan, J. (2016)

Dbl2 Regulates Rad51 and DNA Joint Molecule Metabolism to Ensure Proper Meiotic Chromosome Segregation.

PLoS Genet. 12(6):e1006102
Ghisi, M., Kats, L., Masson, F., Li, J., Kratina, T., Vidacs, E., Gilan, O., Doyle, MA., Newbold, A., Bolden, JE., Fairfax, KA., de Graaf, CA., Firth, M., Zuber, J., Dickins, RA., Corcoran, LM., Dawson, MA., Belz, GT., Johnstone, RW. (2016)

Id2 and E Proteins Orchestrate the Initiation and Maintenance of MLL-Rearranged Acute Myeloid Leukemia.

Cancer Cell. 30(1):59-74
Trentini, DB., Suskiewicz, MJ., Heuck, A., Kurzbauer, R., Deszcz, L., Mechtler, K., Clausen, T. (2016)

Arginine phosphorylation marks proteins for degradation by a Clp protease.

Nature. 539(7627):48-53
Molodtsov, MI., Mieck, C., Dobbelaere, J., Dammermann, A., Westermann, S., Vaziri, A. (2016)

A Force-Induced Directional Switch of a Molecular Motor Enables Parallel Microtubule Bundle Formation.

Cell. 167(2):539-552.e14
Trapp, M., Schulze, F., Novikov, AA., Tirian, L., J Dickson, B., Bühler, K. (2016)

Adaptive and Background-Aware GAL4 Expression Enhancement of Co-registered Confocal Microscopy Images.

Neuroinformatics. 14(2):221-33
Qiao, R., Weissmann, F., Yamaguchi, M., Brown, NG., VanderLinden, R., Imre, R., Jarvis, MA., Brunner, MR., Davidson, IF., Litos, G., Haselbach, D., Mechtler, K., Stark, H., Schulman, BA., Peters, JM. (2016)

Mechanism of APC/CCDC20 activation by mitotic phosphorylation.

Proc Natl Acad Sci U S A. 113(19):E2570-8
Bigenzahn, JW., Fauster, A., Rebsamen, M., Kandasamy, RK., Scorzoni, S., Vladimer, GI., Müller, AC., Gstaiger, M., Zuber, J., Bennett, KL., Superti-Furga, G. (2016)

An Inducible Retroviral Expression System for Tandem Affinity Purification Mass-Spectrometry-Based Proteomics Identifies Mixed Lineage Kinase Domain-like Protein (MLKL) as an Heat Shock Protein 90 (HSP90) Client.

Mol Cell Proteomics. 15(3):1139-50
Weissmann, F., Petzold, G., VanderLinden, R., Huis In 't Veld, PJ., Brown, NG., Lampert, F., Westermann, S., Stark, H., Schulman, BA., Peters, JM. (2016)

biGBac enables rapid gene assembly for the expression of large multisubunit protein complexes.

Proc Natl Acad Sci U S A. 113(19):E2564-9
Valent, P., Groner, B., Schumacher, U., Superti-Furga, G., Busslinger, M., Kralovics, R., Zielinski, C., Penninger, JM., Kerjaschki, D., Stingl, G., Smolen, JS., Valenta, R., Lassmann, H., Kovar, H., Jäger, U., Kornek, G., Müller, M., Sörgel, F. (2016)

Paul Ehrlich (1854-1915) and His Contributions to the Foundation and Birth of Translational Medicine.

J Innate Immun. 8(2):111-20
Brown, NG., VanderLinden, R., Watson, ER., Weissmann, F., Ordureau, A., Wu, KP., Zhang, W., Yu, S., Mercredi, PY., Harrison, JS., Davidson, IF., Qiao, R., Lu, Y., Dube, P., Brunner, MR., Grace, CRR., Miller, DJ., Haselbach, D., Jarvis, MA., Yamaguchi, M., Yanishevski, D., Petzold, G., Sidhu, SS., Kuhlman, B., Kirschner, MW., Harper, JW., Peters, JM., Stark, H., Schulman, BA. (2016)

Dual RING E3 Architectures Regulate Multiubiquitination and Ubiquitin Chain Elongation by APC/C.

Cell. 165(6):1440-1453
Moreno, E., McGaughran, A., Rödelsperger, C., Zimmer, M., Sommer, RJ. (2016)

Oxygen-induced social behaviours in Pristionchus pacificus have a distinct evolutionary history and genetic regulation from Caenorhabditis elegans.

Proc Biol Sci. 283(1825):20152263
Mlecnik, B., Bindea, G., Kirilovsky, A., Angell, HK., Obenauf, AC., Tosolini, M., Church, SE., Maby, P., Vasaturo, A., Angelova, M., Fredriksen, T., Mauger, S., Waldner, M., Berger, A., Speicher, MR., Pagès, F., Valge-Archer, V., Galon, J. (2016)

The tumor microenvironment and Immunoscore are critical determinants of dissemination to distant metastasis.

Sci Transl Med. 8(327):327ra26
Witham, E., Comunian, C., Ratanpal, H., Skora, S., Zimmer, M., Srinivasan, S. (2016)

C. elegans Body Cavity Neurons Are Homeostatic Sensors that Integrate Fluctuations in Oxygen Availability and Internal Nutrient Reserves.

Cell Rep. 14(7):1641-1654
Breuss, M., Fritz, T., Gstrein, T., Chan, K., Ushakova, L., Yu, N., Vonberg, FW., Werner, B., Elling, U., Keays, DA. (2016)

Mutations in the murine homologue of TUBB5 cause microcephaly by perturbing cell cycle progression and inducing p53-associated apoptosis.

Development. 143(7):1126-33
Baker, A., Gregory, GP., Verbrugge, I., Kats, L., Hilton, JJ., Vidacs, E., Lee, EM., Lock, RB., Zuber, J., Shortt, J., Johnstone, RW. (2016)

The CDK9 Inhibitor Dinaciclib Exerts Potent Apoptotic and Antitumor Effects in Preclinical Models of MLL-Rearranged Acute Myeloid Leukemia.

Cancer Res. 76(5):1158-69
Isokane, M., Walter, T., Mahen, R., Nijmeijer, B., Hériché, JK., Miura, K., Maffini, S., Ivanov, MP., Kitajima, TS., Peters, JM., Ellenberg, J. (2016)

ARHGEF17 is an essential spindle assembly checkpoint factor that targets Mps1 to kinetochores.

J Cell Biol. 212(6):647-59
Ladurner, R., Kreidl, E., Ivanov, MP., Ekker, H., Idarraga-Amado, MH., Busslinger, GA., Wutz, G., Cisneros, DA., Peters, JM. (2016)

Sororin actively maintains sister chromatid cohesion.

EMBO J. 35(6):635-53
Kim, JS., He, X., Orr, B., Wutz, G., Hill, V., Peters, JM., Compton, DA., Waldman, T. (2016)

Intact Cohesion, Anaphase, and Chromosome Segregation in Human Cells Harboring Tumor-Derived Mutations in STAG2.

PLoS Genet. 12(2):e1005865
Hempel, A., Pagnamenta, AT., Blyth, M., Mansour, S., McConnell, V., Kou, I., Ikegawa, S., Tsurusaki, Y., Matsumoto, N., Lo-Castro, A., Plessis, G., Albrecht, B., Battaglia, A., Taylor, JC., Howard, MF., Keays, D., Sohal, AS., Kühl, SJ., Kini, U., McNeill, A. (2016)

Deletions and de novo mutations of SOX11 are associated with a neurodevelopmental disorder with features of Coffin-Siris syndrome.

J Med Genet. 53(3):152-62
Minnich, M., Tagoh, H., Bönelt, P., Axelsson, E., Fischer, M., Cebolla, B., Tarakhovsky, A., Nutt, SL., Jaritz, M., Busslinger, M. (2016)

Multifunctional role of the transcription factor Blimp-1 in coordinating plasma cell differentiation.

Nat Immunol. 17(3):331-43
Tellier, J., Shi, W., Minnich, M., Liao, Y., Crawford, S., Smyth, GK., Kallies, A., Busslinger, M., Nutt, SL. (2016)

Blimp-1 controls plasma cell function through the regulation of immunoglobulin secretion and the unfolded protein response.

Nat Immunol. 17(3):323-30
Ali, AK., Oh, JS., Vivier, E., Busslinger, M., Lee, SH. (2016)

NK Cell-Specific Gata3 Ablation Identifies the Maturation Program Required for Bone Marrow Exit and Control of Proliferation.

J Immunol. 196(4):1753-67
Delconte, RB., Shi, W., Sathe, P., Ushiki, T., Seillet, C., Minnich, M., Kolesnik, TB., Rankin, LC., Mielke, LA., Zhang, JG., Busslinger, M., Smyth, MJ., Hutchinson, DS., Nutt, SL., Nicholson, SE., Alexander, WS., Corcoran, LM., Vivier, E., Belz, GT., Carotta, S., Huntington, ND. (2016)

The Helix-Loop-Helix Protein ID2 Governs NK Cell Fate by Tuning Their Sensitivity to Interleukin-15.

Immunity. 44(1):103-115
Mackay, LK., Minnich, M., Kragten, NA., Liao, Y., Nota, B., Seillet, C., Zaid, A., Man, K., Preston, S., Freestone, D., Braun, A., Wynne-Jones, E., Behr, FM., Stark, R., Pellicci, DG., Godfrey, DI., Belz, GT., Pellegrini, M., Gebhardt, T., Busslinger, M., Shi, W., Carbone, FR., van Lier, RA., Kallies, A., van Gisbergen, KP. (2016)

Hobit and Blimp1 instruct a universal transcriptional program of tissue residency in lymphocytes.

Science. 352(6284):459-63
Jarvis, MA., Brown, NG., Watson, ER., VanderLinden, R., Schulman, BA., Peters, JM. (2016)

Measuring APC/C-Dependent Ubiquitylation In Vitro.

Methods Mol Biol. 1342:287-303
Kiermaier, E., Moussion, C., Veldkamp, CT., Gerardy-Schahn, R., de Vries, I., Williams, LG., Chaffee, GR., Phillips, AJ., Freiberger, F., Imre, R., Taleski, D., Payne, RJ., Braun, A., Förster, R., Mechtler, K., Mühlenhoff, M., Volkman, BF., Sixt, M. (2016)

Polysialylation controls dendritic cell trafficking by regulating chemokine recognition.

Science. 351(6269):186-90
Segre, PS., Dakin, R., Zordan, VB., Dickinson, MH., Straw, AD., Altshuler, DL. (2015)

Burst muscle performance predicts the speed, acceleration, and turning performance of Anna's hummingbirds.

Elife. 4:e11159
Rodrigo Albors, A., Tazaki, A., Rost, F., Nowoshilow, S., Chara, O., Tanaka, EM. (2015)

Planar cell polarity-mediated induction of neural stem cell expansion during axolotl spinal cord regeneration.

Elife. 4:e10230
Rampler, E., Stranzl, T., Orban-Nemeth, Z., Hollenstein, DM., Hudecz, O., Schlögelhofer, P., Mechtler, K. (2015)

Comprehensive Cross-Linking Mass Spectrometry Reveals Parallel Orientation and Flexible Conformations of Plant HOP2-MND1.

J Proteome Res. 14(12):5048-62
Ilkovski, B., Pagnamenta, AT., O'Grady, GL., Kinoshita, T., Howard, MF., Lek, M., Thomas, B., Turner, A., Christodoulou, J., Sillence, D., Knight, SJ., Popitsch, N., Keays, DA., Anzilotti, C., Goriely, A., Waddell, LB., Brilot, F., North, KN., Kanzawa, N., Macarthur, DG., Taylor, JC., Kini, U., Murakami, Y., Clarke, NF. (2015)

Mutations in PIGY: expanding the phenotype of inherited glycosylphosphatidylinositol deficiencies.

Hum Mol Genet. 24(21):6146-59
Pauli, A., Montague, TG., Lennox, KA., Behlke, MA., Schier, AF. (2015)

Antisense Oligonucleotide-Mediated Transcript Knockdown in Zebrafish.

PLoS One. 10(10):e0139504
Yeh, C., Coyaud, É., Bashkurov, M., van der Lelij, P., Cheung, SW., Peters, JM., Raught, B., Pelletier, L. (2015)

The Deubiquitinase USP37 Regulates Chromosome Cohesion and Mitotic Progression.

Curr Biol. 25(17):2290-9
Chirn, GW., Rahman, R., Sytnikova, YA., Matts, JA., Zeng, M., Gerlach, D., Yu, M., Berger, B., Naramura, M., Kile, BT., Lau, NC. (2015)

Conserved piRNA Expression from a Distinct Set of piRNA Cluster Loci in Eutherian Mammals.

PLoS Genet. 11(11):e1005652
Breuss, M., Morandell, J., Nimpf, S., Gstrein, T., Lauwers, M., Hochstoeger, T., Braun, A., Chan, K., Sánchez Guajardo, ER., Zhang, L., Suplata, M., Heinze, KG., Elsayad, K., Keays, DA. (2015)

The Expression of Tubb2b Undergoes a Developmental Transition in Murine Cortical Neurons.

J Comp Neurol. 523(15):2161-86
Muerdter, F., Boryń, ŁM., Arnold, CD. (2015)

STARR-seq - principles and applications.

Genomics. 106(3):145-150
Pagnamenta, AT., Howard, MF., Wisniewski, E., Popitsch, N., Knight, SJ., Keays, DA., Quaghebeur, G., Cox, H., Cox, P., Balla, T., Taylor, JC., Kini, U. (2015)

Germline recessive mutations in PI4KA are associated with perisylvian polymicrogyria, cerebellar hypoplasia and arthrogryposis.

Hum Mol Genet. 24(13):3732-41
Phadnis, N., Cipak, L., Polakova, S., Hyppa, RW., Cipakova, I., Anrather, D., Karvaiova, L., Mechtler, K., Smith, GR., Gregan, J. (2015)

Casein Kinase 1 and Phosphorylation of Cohesin Subunit Rec11 (SA3) Promote Meiotic Recombination through Linear Element Formation.

PLoS Genet. 11(5):e1005225
Nagy, V., Cole, T., Van Campenhout, C., Khoung, TM., Leung, C., Vermeiren, S., Novatchkova, M., Wenzel, D., Cikes, D., Polyansky, AA., Kozieradzki, I., Meixner, A., Bellefroid, EJ., Neely, GG., Penninger, JM. (2015)

The evolutionarily conserved transcription factor PRDM12 controls sensory neuron development and pain perception.

Cell Cycle. 14(12):1799-808
Lambing, C., Osman, K., Nuntasoontorn, K., West, A., Higgins, JD., Copenhaver, GP., Yang, J., Armstrong, SJ., Mechtler, K., Roitinger, E., Franklin, FC. (2015)

Arabidopsis PCH2 Mediates Meiotic Chromosome Remodeling and Maturation of Crossovers.

PLoS Genet. 11(7):e1005372
Iacovella, MG., Golfieri, C., Massari, LF., Busnelli, S., Pagliuca, C., Dal Maschio, M., Infantino, V., Visintin, R., Mechtler, K., Ferreira-Cerca, S., De Wulf, P. (2015)

Rio1 promotes rDNA stability and downregulates RNA polymerase I to ensure rDNA segregation.

Nat Commun. 6:6643
Krüttner, S., Traunmüller, L., Dag, U., Jandrasits, K., Stepien, B., Iyer, N., Fradkin, LG., Noordermeer, JN., Mensh, BD., Keleman, K. (2015)

Synaptic Orb2A Bridges Memory Acquisition and Late Memory Consolidation in Drosophila.

Cell Rep. 11(12):1953-65
Isrie, M., Breuss, M., Tian, G., Hansen, AH., Cristofoli, F., Morandell, J., Kupchinsky, ZA., Sifrim, A., Rodriguez-Rodriguez, CM., Dapena, EP., Doonanco, K., Leonard, N., Tinsa, F., Moortgat, S., Ulucan, H., Koparir, E., Karaca, E., Katsanis, N., Marton, V., Vermeesch, JR., Davis, EE., Cowan, NJ., Keays, DA., Van Esch, H. (2015)

Mutations in Either TUBB or MAPRE2 Cause Circumferential Skin Creases Kunze Type.

Am J Hum Genet. 97(6):790-800
Matthews, GM., Mehdipour, P., Cluse, LA., Falkenberg, KJ., Wang, E., Roth, M., Santoro, F., Vidacs, E., Stanley, K., House, CM., Rusche, JR., Vakoc, CR., Zuber, J., Minucci, S., Johnstone, RW. (2015)

Functional-genetic dissection of HDAC dependencies in mouse lymphoid and myeloid malignancies.

Blood. 126(21):2392-403
Wedeh, G., Cerny-Reiterer, S., Eisenwort, G., Herrmann, H., Blatt, K., Hadzijusufovic, E., Sadovnik, I., Müllauer, L., Schwaab, J., Hoffmann, T., Bradner, JE., Radia, D., Sperr, WR., Hoermann, G., Reiter, A., Horny, HP., Zuber, J., Arock, M., Valent, P. (2015)

Identification of bromodomain-containing protein-4 as a novel marker and epigenetic target in mast cell leukemia.

Leukemia. 29(11):2230-7
Ohnmacht, C., Park, JH., Cording, S., Wing, JB., Atarashi, K., Obata, Y., Gaboriau-Routhiau, V., Marques, R., Dulauroy, S., Fedoseeva, M., Busslinger, M., Cerf-Bensussan, N., Boneca, IG., Voehringer, D., Hase, K., Honda, K., Sakaguchi, S., Eberl, G. (2015)

MUCOSAL IMMUNOLOGY. The microbiota regulates type 2 immunity through RORγt⁺ T cells.

Science. 349(6251):989-93
Heier, C., Radner, FP., Moustafa, T., Schreiber, R., Grond, S., Eichmann, TO., Schweiger, M., Schmidt, A., Cerk, IK., Oberer, M., Theussl, HC., Wojciechowski, J., Penninger, JM., Zimmermann, R., Zechner, R. (2015)

G0/G1 Switch Gene 2 Regulates Cardiac Lipolysis.

J Biol Chem. 290(43):26141-50
Grabner, B., Schramek, D., Mueller, KM., Moll, HP., Svinka, J., Hoffmann, T., Bauer, E., Blaas, L., Hruschka, N., Zboray, K., Stiedl, P., Nivarthi, H., Bogner, E., Gruber, W., Mohr, T., Zwick, RH., Kenner, L., Poli, V., Aberger, F., Stoiber, D., Egger, G., Esterbauer, H., Zuber, J., Moriggl, R., Eferl, R., Győrffy, B., Penninger, JM., Popper, H., Casanova, E. (2015)

Disruption of STAT3 signalling promotes KRAS-induced lung tumorigenesis.

Nat Commun. 6:6285
Ebert, A., Hill, L., Busslinger, M. (2015)

Spatial Regulation of V-(D)J Recombination at Antigen Receptor Loci.

Adv Immunol. 128:93-121
Kato, S., Kaplan, HS., Schrödel, T., Skora, S., Lindsay, TH., Yemini, E., Lockery, S., Zimmer, M. (2015)

Global brain dynamics embed the motor command sequence of Caenorhabditis elegans.

Cell. 163(3):656-69
Stevenson, P., Götz, C., Baiz, CR., Akerboom, J., Tokmakoff, A., Vaziri, A. (2015)

Visualizing KcsA conformational changes upon ion binding by infrared spectroscopy and atomistic modeling.

J Phys Chem B. 119(18):5824-31
Poepsel, S., Sprengel, A., Sacca, B., Kaschani, F., Kaiser, M., Gatsogiannis, C., Raunser, S., Clausen, T., Ehrmann, M. (2015)

Determinants of amyloid fibril degradation by the PDZ protease HTRA1.

Nat Chem Biol. 11(11):862-9
Cheloufi, S., Elling, U., Hopfgartner, B., Jung, YL., Murn, J., Ninova, M., Hubmann, M., Badeaux, AI., Euong Ang, C., Tenen, D., Wesche, DJ., Abazova, N., Hogue, M., Tasdemir, N., Brumbaugh, J., Rathert, P., Jude, J., Ferrari, F., Blanco, A., Fellner, M., Wenzel, D., Zinner, M., Vidal, SE., Bell, O., Stadtfeld, M., Chang, HY., Almouzni, G., Lowe, SW., Rinn, J., Wernig, M., Aravin, A., Shi, Y., Park, PJ., Penninger, JM., Zuber, J., Hochedlinger, K. (2015)

The histone chaperone CAF-1 safeguards somatic cell identity.

Nature. 528(7581):218-24
Stampfel, G., Kazmar, T., Frank, O., Wienerroither, S., Reiter, F., Stark, A. (2015)

Transcriptional regulators form diverse groups with context-dependent regulatory functions.

Nature. 528(7580):147-51
Haberle, V., Stark, A. (2015)

Coordinating the human looks.

Cell. 163(1):24-6
Sezer, U., Wörner, L., Horak, J., Felix, L., Tüxen, J., Götz, C., Vaziri, A., Mayor, M., Arndt, M. (2015)

Laser-induced acoustic desorption of natural and functionalized biochromophores.

Anal Chem. 87(11):5614-9
Grebien, F., Vedadi, M., Getlik, M., Giambruno, R., Grover, A., Avellino, R., Skucha, A., Vittori, S., Kuznetsova, E., Smil, D., Barsyte-Lovejoy, D., Li, F., Poda, G., Schapira, M., Wu, H., Dong, A., Senisterra, G., Stukalov, A., Huber, KV., Schönegger, A., Marcellus, R., Bilban, M., Bock, C., Brown, PJ., Zuber, J., Bennett, KL., Al-Awar, R., Delwel, R., Nerlov, C., Arrowsmith, CH., Superti-Furga, G. (2015)

Erratum: Pharmacological targeting of the Wdr5-MLL interaction in C/EBPα N-terminal leukemia.

Nat Chem Biol. 11(10):815
Loewenstein, Y., Yanover, U., Rumpel, S. (2015)

Predicting the Dynamics of Network Connectivity in the Neocortex.

J Neurosci. 35(36):12535-44
Mieck, C., Molodtsov, MI., Drzewicka, K., van der Vaart, B., Litos, G., Schmauss, G., Vaziri, A., Westermann, S. (2015)

Non-catalytic motor domains enable processive movement and functional diversification of the kinesin-14 Kar3.

Elife. 4
Roitinger, E., Hofer, M., Köcher, T., Pichler, P., Novatchkova, M., Yang, J., Schlögelhofer, P., Mechtler, K. (2015)

Quantitative phosphoproteomics of the ataxia telangiectasia-mutated (ATM) and ataxia telangiectasia-mutated and rad3-related (ATR) dependent DNA damage response in Arabidopsis thaliana.

Mol Cell Proteomics. 14(3):556-71
Rodrigo Albors, A., Tanaka, EM. (2015)

High-efficiency electroporation of the spinal cord in larval axolotl.

Methods Mol Biol. 1290:115-25
Khattak, S., Tanaka, EM. (2015)

Transgenesis in axolotl (Ambystoma mexicanum).

Methods Mol Biol. 1290:269-77
Schneider, M., Hellerschmied, D., Schubert, T., Amlacher, S., Vinayachandran, V., Reja, R., Pugh, BF., Clausen, T., Köhler, A. (2015)

The Nuclear Pore-Associated TREX-2 Complex Employs Mediator to Regulate Gene Expression.

Cell. 162(5):1016-28
Chari, A., Haselbach, D., Kirves, JM., Ohmer, J., Paknia, E., Fischer, N., Ganichkin, O., Möller, V., Frye, JJ., Petzold, G., Jarvis, M., Tietzel, M., Grimm, C., Peters, JM., Schulman, BA., Tittmann, K., Markl, J., Fischer, U., Stark, H. (2015)

ProteoPlex: stability optimization of macromolecular complexes by sparse-matrix screening of chemical space.

Nat Methods. 12(9):859-65
Nutt, SL., Heavey, B., Rolink, AG., Busslinger, M. (2015)

Pillars Article: Commitment to the B-lymphoid lineage depends on the transcription factor Pax5. Nature. 1999. 401: 556-562.

J Immunol. 195(3):766-72
Spletter, ML., Barz, C., Yeroslaviz, A., Schönbauer, C., Ferreira, IR., Sarov, M., Gerlach, D., Stark, A., Habermann, BH., Schnorrer, F. (2015)

The RNA-binding protein Arrest (Bruno) regulates alternative splicing to enable myofibril maturation in Drosophila flight muscle.

EMBO Rep. 16(2):178-91
Rathert, P., Roth, M., Neumann, T., Muerdter, F., Roe, JS., Muhar, M., Deswal, S., Cerny-Reiterer, S., Peter, B., Jude, J., Hoffmann, T., Boryń, ŁM., Axelsson, E., Schweifer, N., Tontsch-Grunt, U., Dow, LE., Gianni, D., Pearson, M., Valent, P., Stark, A., Kraut, N., Vakoc, CR., Zuber, J. (2015)

Transcriptional plasticity promotes primary and acquired resistance to BET inhibition.

Nature. 525(7570):543-547
Brondfield, S., Umesh, S., Corella, A., Zuber, J., Rappaport, AR., Gaillard, C., Lowe, SW., Goga, A., Kogan, SC. (2015)

Direct and indirect targeting of MYC to treat acute myeloid leukemia.

Cancer Chemother Pharmacol. 76(1):35-46
Schwarzer, A., Holtmann, H., Brugman, M., Meyer, J., Schauerte, C., Zuber, J., Steinemann, D., Schlegelberger, B., Li, Z., Baum, C. (2015)

Hyperactivation of mTORC1 and mTORC2 by multiple oncogenic events causes addiction to eIF4E-dependent mRNA translation in T-cell leukemia.

Oncogene. 34(27):3593-604
Yamano, T., Nedjic, J., Hinterberger, M., Steinert, M., Koser, S., Pinto, S., Gerdes, N., Lutgens, E., Ishimaru, N., Busslinger, M., Brors, B., Kyewski, B., Klein, L. (2015)

Thymic B Cells Are Licensed to Present Self Antigens for Central T Cell Tolerance Induction.

Immunity. 42(6):1048-61
Fenton, RA., Poulsen, SB., de la Mora Chavez, S., Soleimani, M., Busslinger, M., Dominguez Rieg, JA., Rieg, T. (2015)

Caffeine-induced diuresis and natriuresis is independent of renal tubular NHE3.

Am J Physiol Renal Physiol. 308(12):F1409-20
Witkowski, MT., Cimmino, L., Hu, Y., Trimarchi, T., Tagoh, H., McKenzie, MD., Best, SA., Tuohey, L., Willson, TA., Nutt, SL., Busslinger, M., Aifantis, I., Smyth, GK., Dickins, RA. (2015)

Activated Notch counteracts Ikaros tumor suppression in mouse and human T-cell acute lymphoblastic leukemia.

Leukemia. 29(6):1301-11
Nasso, S., Hartler, J., Trajanoski, Z., Di Camillo, B., Mechtler, K., Toffolo, GM. (2015)

3DSpectra: A 3-dimensional quantification algorithm for LC-MS labeled profile data.

J Proteomics. 112:156-65
Kulinski, TM., Casari, MR., Guenzl, PM., Wenzel, D., Andergassen, D., Hladik, A., Datlinger, P., Farlik, M., Theussl, HC., Penninger, JM., Knapp, S., Bock, C., Barlow, DP., Hudson, QJ. (2015)

Imprinted expression in cystic embryoid bodies shows an embryonic and not an extra-embryonic pattern.

Dev Biol. 402(2):291-305
Brown, NG., VanderLinden, R., Watson, ER., Qiao, R., Grace, CR., Yamaguchi, M., Weissmann, F., Frye, JJ., Dube, P., Ei Cho, S., Actis, ML., Rodrigues, P., Fujii, N., Peters, JM., Stark, H., Schulman, BA. (2015)

RING E3 mechanism for ubiquitin ligation to a disordered substrate visualized for human anaphase-promoting complex.

Proc Natl Acad Sci U S A. 112(17):5272-9
Zhao, Z., Chen, CC., Rillahan, CD., Shen, R., Kitzing, T., McNerney, ME., Diaz-Flores, E., Zuber, J., Shannon, K., Le Beau, MM., Spector, MS., Kogan, SC., Lowe, SW. (2015)

Cooperative loss of RAS feedback regulation drives myeloid leukemogenesis.

Nat Genet. 47(5):539-43
DiMaio, F., Song, Y., Li, X., Brunner, MJ., Xu, C., Conticello, V., Egelman, E., Marlovits, T., Cheng, Y., Baker, D. (2015)

Atomic-accuracy models from 4.5-Å cryo-electron microscopy data with density-guided iterative local refinement.

Nat Methods. 12(4):361-365
Yamaguchi, M., Yu, S., Qiao, R., Weissmann, F., Miller, DJ., VanderLinden, R., Brown, NG., Frye, JJ., Peters, JM., Schulman, BA. (2015)

Structure of an APC3-APC16 complex: insights into assembly of the anaphase-promoting complex/cyclosome.

J Mol Biol. 427(8):1748-64
Edelman, NB., Fritz, T., Nimpf, S., Pichler, P., Lauwers, M., Hickman, RW., Papadaki-Anastasopoulou, A., Ushakova, L., Heuser, T., Resch, GP., Saunders, M., Shaw, JA., Keays, DA. (2015)

No evidence for intracellular magnetite in putative vertebrate magnetoreceptors identified by magnetic screening.

Proc Natl Acad Sci U S A. 112(1):262-7
Murn, J., Zarnack, K., Yang, YJ., Durak, O., Murphy, EA., Cheloufi, S., Gonzalez, DM., Teplova, M., Curk, T., Zuber, J., Patel, DJ., Ule, J., Luscombe, NM., Tsai, LH., Walsh, CA., Shi, Y. (2015)

Control of a neuronal morphology program by an RNA-binding zinc finger protein, Unkempt.

Genes Dev. 29(5):501-12
Zabidi, MA., Arnold, CD., Schernhuber, K., Pagani, M., Rath, M., Frank, O., Stark, A. (2015)

Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation.

Nature. 518(7540):556-9
Rudolph, D., Impagnatiello, MA., Blaukopf, C., Sommer, C., Gerlich, DW., Roth, M., Tontsch-Grunt, U., Wernitznig, A., Savarese, F., Hofmann, MH., Albrecht, C., Geiselmann, L., Reschke, M., Garin-Chesa, P., Zuber, J., Moll, J., Adolf, GR., Kraut, N. (2015)

Efficacy and mechanism of action of volasertib, a potent and selective inhibitor of Polo-like kinases, in preclinical models of acute myeloid leukemia.

J Pharmacol Exp Ther. 352(3):579-89
Rupprecht, P., Prevedel, R., Groessl, F., Haubensak, WE., Vaziri, A. (2015)

Optimizing and extending light-sculpting microscopy for fast functional imaging in neuroscience.

Biomed Opt Express. 6(2):353-68
Scheicher, R., Hoelbl-Kovacic, A., Bellutti, F., Tigan, AS., Prchal-Murphy, M., Heller, G., Schneckenleithner, C., Salazar-Roa, M., Zöchbauer-Müller, S., Zuber, J., Malumbres, M., Kollmann, K., Sexl, V. (2015)

CDK6 as a key regulator of hematopoietic and leukemic stem cell activation.

Blood. 125(1):90-101
Bigenzahn, JW., Fauster, A., Rebsamen, M., Kandasamy, RK., Scorzoni, S., Vladimer, GI., Mueller, AC., Gstaiger, M., Zuber, J., Bennett, KL., Superti-Furga, G. (2015)

An inducible retroviral expression system for tandem affinity purification mass-spectrometry-based proteomics identifies MLKL as an HSP90 client.

Mol Cell Proteomics.
Khattak, S., Schuez, M., Richter, T., Knapp, D., Haigo, SL., Sandoval-Guzmán, T., Hradlikova, K., Duemmler, A., Kerney, R., Tanaka, EM. (2014)

Germline Transgenic Methods for Tracking Cells and Testing Gene Function during Regeneration in the Axolotl.

Stem Cell Reports. 2(2):243
Trentini, DB., Fuhrmann, J., Mechtler, K., Clausen, T. (2014)

Chasing Phosphoarginine Proteins: Development of a Selective Enrichment Method Using a Phosphatase Trap.

Mol Cell Proteomics. 13(8):1953-64
Reuter, MS., Musante, L., Hu, H., Diederich, S., Sticht, H., Ekici, AB., Uebe, S., Wienker, TF., Bartsch, O., Zechner, U., Oppitz, C., Keleman, K., Jamra, RA., Najmabadi, H., Schweiger, S., Reis, A., Kahrizi, K. (2014)

NDST1 missense mutations in autosomal recessive intellectual disability.

Am J Med Genet A. 164A(11):2753-63
Yuan, TL., Fellmann, C., Lee, CS., Ritchie, CD., Thapar, V., Lee, LC., Hsu, DJ., Grace, D., Carver, JO., Zuber, J., Luo, J., McCormick, F., Lowe, SW. (2014)

Development of siRNA payloads to target KRAS-mutant cancer.

Cancer Discov. 4(10):1182-1197
Norell, D., Heuck, A., Tran-Thi, TA., Götzke, H., Jacob-Dubuisson, F., Clausen, T., Daley, DO., Braun, V., Müller, M., Fan, E. (2014)

Versatile in vitro system to study translocation and functional integration of bacterial outer membrane proteins.

Nat Commun. 5:5396
Rao, S., Tortola, L., Perlot, T., Wirnsberger, G., Novatchkova, M., Nitsch, R., Sykacek, P., Frank, L., Schramek, D., Komnenovic, V., Sigl, V., Aumayr, K., Schmauss, G., Fellner, N., Handschuh, S., Glösmann, M., Pasierbek, P., Schlederer, M., Resch, GP., Ma, Y., Yang, H., Popper, H., Kenner, L., Kroemer, G., Penninger, JM. (2014)

A dual role for autophagy in a murine model of lung cancer.

Nat Commun. 5:3056
Meinhardt, A., Eberle, D., Tazaki, A., Ranga, A., Niesche, M., Wilsch-Bräuninger, M., Stec, A., Schackert, G., Lutolf, M., Tanaka, EM. (2014)

3D reconstitution of the patterned neural tube from embryonic stem cells.

Stem Cell Reports. 3(6):987-99
Waidmann, S., Kusenda, B., Mayerhofer, J., Mechtler, K., Jonak, C. (2014)

A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis.

Plant Cell. 26(11):4328-44
Tomanov, K., Zeschmann, A., Hermkes, R., Eifler, K., Ziba, I., Grieco, M., Novatchkova, M., Hofmann, K., Hesse, H., Bachmair, A. (2014)

Arabidopsis PIAL1 and 2 promote SUMO chain formation as E4-type SUMO ligases and are involved in stress responses and sulfur metabolism.

Plant Cell. 26(11):4547-60
Fenk, LM., Poehlmann, A., Straw, AD. (2014)

Asymmetric processing of visual motion for simultaneous object and background responses.

Curr Biol. 24(24):2913-9
Sawicka, A., Hartl, D., Goiser, M., Pusch, O., Stocsits, RR., Tamir, IM., Mechtler, K., Seiser, C. (2014)

H3S28 phosphorylation is a hallmark of the transcriptional response to cellular stress.

Genome Res. 24(11):1808-20
Jurkin, J., Henkel, T., Nielsen, AF., Minnich, M., Popow, J., Kaufmann, T., Heindl, K., Hoffmann, T., Busslinger, M., Martinez, J. (2014)

The mammalian tRNA ligase complex mediates splicing of XBP1 mRNA and controls antibody secretion in plasma cells.

EMBO J. 33(24):2922-36
Shodhan, A., Lukaszewicz, A., Novatchkova, M., Loidl, J. (2014)

Msh4 and Msh5 function in SC-independent chiasma formation during the streamlined meiosis of Tetrahymena.

Genetics. 198(3):983-93
Moczulska, KE., Pichler, P., Schutzbier, M., Schleiffer, A., Rumpel, S., Mechtler, K. (2014)

Deep and precise quantification of the mouse synaptosomal proteome reveals substantial remodeling during postnatal maturation.

J Proteome Res. 13(10):4310-24
Ladurner, R., Bhaskara, V., Huis in 't Veld, PJ., Davidson, IF., Kreidl, E., Petzold, G., Peters, JM. (2014)

Cohesin's ATPase activity couples cohesin loading onto DNA with Smc3 acetylation.

Curr Biol. 24(19):2228-37
Yapici, N., Zimmer, M., Domingos, AI. (2014)

Cellular and molecular basis of decision-making.

EMBO Rep. 15(10):1023-35
Fei, JF., Schuez, M., Tazaki, A., Taniguchi, Y., Roensch, K., Tanaka, EM. (2014)

CRISPR-mediated genomic deletion of Sox2 in the axolotl shows a requirement in spinal cord neural stem cell amplification during tail regeneration.

Stem Cell Reports. 3(3):444-59
Ngo, L., Haas, M., Qu, Z., Li, SS., Zenker, J., Teng, KS., Gunnersen, JM., Breuss, M., Habgood, M., Keays, DA., Heng, JI. (2014)

TUBB5 and its disease-associated mutations influence the terminal differentiation and dendritic spine densities of cerebral cortical neurons.

Hum Mol Genet. 23(19):5147-58
Malvezzi, F., Westermann, S. (2014)

"Uno, nessuno e centomila": the different faces of the budding yeast kinetochore.

Chromosoma. 123(5):447-57
Chin, AL., Lin, CY., Fu, TF., Dickson, BJ., Chiang, AS. (2014)

Diversity and wiring variability of visual local neurons in the Drosophila medulla M6 stratum.

J Comp Neurol. 522(17):3795-816
Galán, JE., Lara-Tejero, M., Marlovits, TC., Wagner, S. (2014)

Bacterial type III secretion systems: specialized nanomachines for protein delivery into target cells.

Annu Rev Microbiol. 68:415-38
Köcher, T., Pichler, P., De Pra, M., Rieux, L., Swart, R., Mechtler, K. (2014)

Development and performance evaluation of an ultralow flow nanoliquid chromatography-tandem mass spectrometry set-up.

Proteomics. 14(17-18):1999-2007
Valent, P., Zuber, J. (2014)

BRD4: a BET(ter) target for the treatment of AML?

Cell Cycle. 13(5):689-90
Wang, Q., Oliveira, T., Jankovic, M., Silva, IT., Hakim, O., Yao, K., Gazumyan, A., Mayer, CT., Pavri, R., Casellas, R., Nussenzweig, MC., Robbiani, DF. (2014)

Epigenetic targeting of activation-induced cytidine deaminase.

Proc Natl Acad Sci U S A. 111(52):18667-72
Mérai, Z., Chumak, N., García-Aguilar, M., Hsieh, TF., Nishimura, T., Schoft, VK., Bindics, J., Slusarz, L., Arnoux, S., Opravil, S., Mechtler, K., Zilberman, D., Fischer, RL., Tamaru, H. (2014)

The AAA-ATPase molecular chaperone Cdc48/p97 disassembles sumoylated centromeres, decondenses heterochromatin, and activates ribosomal RNA genes.

Proc Natl Acad Sci U S A. 111(45):16166-71
Walzer, M., Pernas, LE., Nasso, S., Bittremieux, W., Nahnsen, S., Kelchtermans, P., Pichler, P., van den Toorn, HW., Staes, A., Vandenbussche, J., Mazanek, M., Taus, T., Scheltema, RA., Kelstrup, CD., Gatto, L., van Breukelen, B., Aiche, S., Valkenborg, D., Laukens, K., Lilley, KS., Olsen, JV., Heck, AJ., Mechtler, K., Aebersold, R., Gevaert, K., Vizcaíno, JA., Hermjakob, H., Kohlbacher, O., Martens, L. (2014)

qcML: an exchange format for quality control metrics from mass spectrometry experiments.

Mol Cell Proteomics. 13(8):1905-13
Dürnberger, G., Camurdanoglu, BZ., Tomschik, M., Schutzbier, M., Roitinger, E., Hudecz, O., Mechtler, K., Herbst, R. (2014)

Global analysis of muscle-specific kinase signaling by quantitative phosphoproteomics.

Mol Cell Proteomics. 13(8):1993-2003
Dorfer, V., Pichler, P., Stranzl, T., Stadlmann, J., Taus, T., Winkler, S., Mechtler, K. (2014)

MS Amanda, a universal identification algorithm optimized for high accuracy tandem mass spectra.

J Proteome Res. 13(8):3679-84
Burgess, MR., Hwang, E., Firestone, AJ., Huang, T., Xu, J., Zuber, J., Bohin, N., Wen, T., Kogan, SC., Haigis, KM., Sampath, D., Lowe, S., Shannon, K., Li, Q. (2014)

Preclinical efficacy of MEK inhibition in Nras-mutant AML.

Blood. 124(26):3947-55
Qian, J., Wang, Q., Dose, M., Pruett, N., Kieffer-Kwon, KR., Resch, W., Liang, G., Tang, Z., Mathé, E., Benner, C., Dubois, W., Nelson, S., Vian, L., Oliveira, TY., Jankovic, M., Hakim, O., Gazumyan, A., Pavri, R., Awasthi, P., Song, B., Liu, G., Chen, L., Zhu, S., Feigenbaum, L., Staudt, L., Murre, C., Ruan, Y., Robbiani, DF., Pan-Hammarström, Q., Nussenzweig, MC., Casellas, R. (2014)

B cell super-enhancers and regulatory clusters recruit AID tumorigenic activity.

Cell. 159(7):1524-37
Yáñez-Cuna, JO., Arnold, CD., Stampfel, G., Boryń, LM., Gerlach, D., Rath, M., Stark, A. (2014)

Dissection of thousands of cell type-specific enhancers identifies dinucleotide repeat motifs as general enhancer features.

Genome Res. 24(7):1147-56
van der Lelij, P., Stocsits, RR., Ladurner, R., Petzold, G., Kreidl, E., Koch, B., Schmitz, J., Neumann, B., Ellenberg, J., Peters, JM. (2014)

SNW1 enables sister chromatid cohesion by mediating the splicing of sororin and APC2 pre-mRNAs.

EMBO J. 33(22):2643-58
Dell, AI., Bender, JA., Branson, K., Couzin, ID., de Polavieja, GG., Noldus, LP., Pérez-Escudero, A., Perona, P., Straw, AD., Wikelski, M., Brose, U. (2014)

Automated image-based tracking and its application in ecology.

Trends Ecol Evol. 29(7):417-28
Ader, M., Tanaka, EM. (2014)

Modeling human development in 3D culture.

Curr Opin Cell Biol. 31:23-8
Demajo, S., Uribesalgo, I., Gutiérrez, A., Ballaré, C., Capdevila, S., Roth, M., Zuber, J., Martín-Caballero, J., Di Croce, L. (2014)

ZRF1 controls the retinoic acid pathway and regulates leukemogenic potential in acute myeloid leukemia.

Oncogene. 33(48):5501-10
Wirnsberger, G., Zwolanek, F., Stadlmann, J., Tortola, L., Liu, SW., Perlot, T., Järvinen, P., Dürnberger, G., Kozieradzki, I., Sarao, R., De Martino, A., Boztug, K., Mechtler, K., Kuchler, K., Klein, C., Elling, U., Penninger, JM. (2014)

Jagunal homolog 1 is a critical regulator of neutrophil function in fungal host defense.

Nat Genet. 46(9):1028-33
Sandoval-Guzmán, T., Wang, H., Khattak, S., Schuez, M., Roensch, K., Nacu, E., Tazaki, A., Joven, A., Tanaka, EM., Simon, A. (2014)

Fundamental differences in dedifferentiation and stem cell recruitment during skeletal muscle regeneration in two salamander species.

Cell Stem Cell. 14(2):174-87
Busslinger, M., Tarakhovsky, A. (2014)

Epigenetic control of immunity.

Cold Spring Harb Perspect Biol. 6(6)
Brown, NG., Watson, ER., Weissmann, F., Jarvis, MA., VanderLinden, R., Grace, CRR., Frye, JJ., Qiao, R., Dube, P., Petzold, G., Cho, SE., Alsharif, O., Bao, J., Davidson, IF., Zheng, JJ., Nourse, A., Kurinov, I., Peters, JM., Stark, H., Schulman, BA. (2014)

Mechanism of polyubiquitination by human anaphase-promoting complex: RING repurposing for ubiquitin chain assembly.

Mol Cell. 56(2):246-260
Hellerschmied, D., Clausen, T. (2014)

Myosin chaperones.

Curr Opin Struct Biol. 25:9-15
Huis in 't Veld, PJ., Herzog, F., Ladurner, R., Davidson, IF., Piric, S., Kreidl, E., Bhaskara, V., Aebersold, R., Peters, JM. (2014)

Characterization of a DNA exit gate in the human cohesin ring.

Science. 346(6212):968-72
Rudalska, R., Dauch, D., Longerich, T., McJunkin, K., Wuestefeld, T., Kang, TW., Hohmeyer, A., Pesic, M., Leibold, J., von Thun, A., Schirmacher, P., Zuber, J., Weiss, KH., Powers, S., Malek, NP., Eilers, M., Sipos, B., Lowe, SW., Geffers, R., Laufer, S., Zender, L. (2014)

In vivo RNAi screening identifies a mechanism of sorafenib resistance in liver cancer.

Nat Med. 20(10):1138-46
Aschauer, DF., Rumpel, S. (2014)

Measuring the functional organization of the neocortex at large and small scales.

Neuron. 83(4):756-8
Cai, H., Haubensak, W., Anthony, TE., Anderson, DJ. (2014)

Central amygdala PKC-δ(+) neurons mediate the influence of multiple anorexigenic signals.

Nat Neurosci. 17(9):1240-8
Hornung, P., Troc, P., Malvezzi, F., Maier, M., Demianova, Z., Zimniak, T., Litos, G., Lampert, F., Schleiffer, A., Brunner, M., Mechtler, K., Herzog, F., Marlovits, TC., Westermann, S. (2014)

A cooperative mechanism drives budding yeast kinetochore assembly downstream of CENP-A.

J Cell Biol. 206(4):509-24
Muerdter, F., Stark, A. (2014)

Genomics: Hiding in plain sight.

Nature. 512(7515):374-5
Chara, O., Tanaka, EM., Brusch, L. (2014)

Mathematical modeling of regenerative processes.

Curr Top Dev Biol. 108:283-317
Carido, M., Zhu, Y., Postel, K., Benkner, B., Cimalla, P., Karl, MO., Kurth, T., Paquet-Durand, F., Koch, E., Münch, TA., Tanaka, EM., Ader, M. (2014)

Characterization of a mouse model with complete RPE loss and its use for RPE cell transplantation.

Invest Ophthalmol Vis Sci. 55(8):5431-44
Schmidt, A., Trentini, DB., Spiess, S., Fuhrmann, J., Ammerer, G., Mechtler, K., Clausen, T. (2014)

Quantitative phosphoproteomics reveals the role of protein arginine phosphorylation in the bacterial stress response.

Mol Cell Proteomics. 13(2):537-50
Huang, CH., Lujambio, A., Zuber, J., Tschaharganeh, DF., Doran, MG., Evans, MJ., Kitzing, T., Zhu, N., de Stanchina, E., Sawyers, CL., Armstrong, SA., Lewis, JS., Sherr, CJ., Lowe, SW. (2014)

CDK9-mediated transcription elongation is required for MYC addiction in hepatocellular carcinoma.

Genes Dev. 28(16):1800-14
Kvon, EZ., Kazmar, T., Stampfel, G., Yáñez-Cuna, JO., Pagani, M., Schernhuber, K., Dickson, BJ., Stark, A. (2014)

Genome-scale functional characterization of Drosophila developmental enhancers in vivo.

Nature. 512(7512):91-5
Khattak, S., Murawala, P., Andreas, H., Kappert, V., Schuez, M., Sandoval-Guzmán, T., Crawford, K., Tanaka, EM. (2014)

Optimized axolotl (Ambystoma mexicanum) husbandry, breeding, metamorphosis, transgenesis and tamoxifen-mediated recombination.

Nat Protoc. 9(3):529-40
Meier, M., Serbe, E., Maisak, MS., Haag, J., Dickson, BJ., Borst, A. (2014)

Neural circuit components of the Drosophila OFF motion vision pathway.

Curr Biol. 24(4):385-92
Arnold, CD., Gerlach, D., Spies, D., Matts, JA., Sytnikova, YA., Pagani, M., Lau, NC., Stark, A. (2014)

Quantitative genome-wide enhancer activity maps for five Drosophila species show functional enhancer conservation and turnover during cis-regulatory evolution.

Nat Genet. 46(7):685-92
Bath, DE., Stowers, JR., Hörmann, D., Poehlmann, A., Dickson, BJ., Straw, AD. (2014)

FlyMAD: rapid thermogenetic control of neuronal activity in freely walking Drosophila.

Nat Methods. 11(7):756-62
Feng, K., Palfreyman, MT., Häsemeyer, M., Talsma, A., Dickson, BJ. (2014)

Ascending SAG neurons control sexual receptivity of Drosophila females.

Neuron. 83(1):135-48
Dikfidan, A., Loll, B., Zeymer, C., Magler, I., Clausen, T., Meinhart, A. (2014)

RNA specificity and regulation of catalysis in the eukaryotic polynucleotide kinase Clp1.

Mol Cell. 54(6):975-86
Prevedel, R., Yoon, YG., Hoffmann, M., Pak, N., Wetzstein, G., Kato, S., Schrödel, T., Raskar, R., Zimmer, M., Boyden, ES., Vaziri, A. (2014)

Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy.

Nat Methods. 11(7):727-730
von Philipsborn, AC., Jörchel, S., Tirian, L., Demir, E., Morita, T., Stern, DL., Dickson, BJ. (2014)

Cellular and behavioral functions of fruitless isoforms in Drosophila courtship.

Curr Biol. 24(3):242-51
Mueller, J., Pfanzelter, J., Winkler, C., Narita, A., Le Clainche, C., Nemethova, M., Carlier, MF., Maeda, Y., Welch, MD., Ohkawa, T., Schmeiser, C., Resch, GP., Small, JV. (2014)

Electron tomography and simulation of baculovirus actin comet tails support a tethered filament model of pathogen propulsion.

PLoS Biol. 12(1):e1001765
Meireles-Filho, ACA., Bardet, AF., Yáñez-Cuna, JO., Stampfel, G., Stark, A. (2014)

cis-regulatory requirements for tissue-specific programs of the circadian clock.

Curr Biol. 24(1):1-10
Hofbauer, HF., Schopf, FH., Schleifer, H., Knittelfelder, OL., Pieber, B., Rechberger, GN., Wolinski, H., Gaspar, ML., Kappe, CO., Stadlmann, J., Mechtler, K., Zenz, A., Lohner, K., Tehlivets, O., Henry, SA., Kohlwein, SD. (2014)

Regulation of gene expression through a transcriptional repressor that senses acyl-chain length in membrane phospholipids.

Dev Cell. 29(6):729-39
Popow, J., Jurkin, J., Schleiffer, A., Martinez, J. (2014)

Analysis of orthologous groups reveals archease and DDX1 as tRNA splicing factors.

Nature. 511(7507):104-7
Liu, GJ., Cimmino, L., Jude, JG., Hu, Y., Witkowski, MT., McKenzie, MD., Kartal-Kaess, M., Best, SA., Tuohey, L., Liao, Y., Shi, W., Mullighan, CG., Farrar, MA., Nutt, SL., Smyth, GK., Zuber, J., Dickins, RA. (2014)

Pax5 loss imposes a reversible differentiation block in B-progenitor acute lymphoblastic leukemia.

Genes Dev. 28(12):1337-50
Klose, CSN., Flach, M., Möhle, L., Rogell, L., Hoyler, T., Ebert, K., Fabiunke, C., Pfeifer, D., Sexl, V., Fonseca-Pereira, D., Domingues, RG., Veiga-Fernandes, H., Arnold, SJ., Busslinger, M., Dunay, IR., Tanriver, Y., Diefenbach, A. (2014)

Differentiation of type 1 ILCs from a common progenitor to all helper-like innate lymphoid cell lineages.

Cell. 157(2):340-356
Chen, C., Liu, Y., Rappaport, AR., Kitzing, T., Schultz, N., Zhao, Z., Shroff, AS., Dickins, RA., Vakoc, CR., Bradner, JE., Stock, W., LeBeau, MM., Shannon, KM., Kogan, S., Zuber, J., Lowe, SW. (2014)

MLL3 is a haploinsufficient 7q tumor suppressor in acute myeloid leukemia.

Cancer Cell. 25(5):652-65
Karaca, E., Weitzer, S., Pehlivan, D., Shiraishi, H., Gogakos, T., Hanada, T., Jhangiani, SN., Wiszniewski, W., Withers, M., Campbell, IM., Erdin, S., Isikay, S., Franco, LM., Gonzaga-Jauregui, C., Gambin, T., Gelowani, V., Hunter, JV., Yesil, G., Koparir, E., Yilmaz, S., Brown, M., Briskin, D., Hafner, M., Morozov, P., Farazi, TA., Bernreuther, C., Glatzel, M., Trattnig, S., Friske, J., Kronnerwetter, C., Bainbridge, MN., Gezdirici, A., Seven, M., Muzny, DM., Boerwinkle, E., Ozen, M., Clausen, T., Tuschl, T., Yuksel, A., Hess, A., Gibbs, RA., Martinez, J., Penninger, JM., Lupski, JR. (2014)

Human CLP1 mutations alter tRNA biogenesis, affecting both peripheral and central nervous system function.

Cell. 157(3):636-50
Zhao, X., Chen, A., Yan, X., Zhang, Y., He, F., Hayashi, Y., Dong, Y., Rao, Y., Li, B., Conway, RM., Maiques-Diaz, A., Elf, SE., Huang, N., Zuber, J., Xiao, Z., Tse, W., Tenen, DG., Wang, Q., Chen, W., Mulloy, JC., Nimer, SD., Huang, G. (2014)

Downregulation of RUNX1/CBFβ by MLL fusion proteins enhances hematopoietic stem cell self-renewal.

Blood. 123(11):1729-38
Fuller, SB., Straw, AD., Peek, MY., Murray, RM., Dickinson, MH. (2014)

Flying Drosophila stabilize their vision-based velocity controller by sensing wind with their antennae.

Proc Natl Acad Sci U S A. 111(13):E1182-91
Shlyueva, D., Stelzer, C., Gerlach, D., Yáñez-Cuna, JO., Rath, M., Boryń, ŁM., Arnold, CD., Stark, A. (2014)

Hormone-responsive enhancer-activity maps reveal predictive motifs, indirect repression, and targeting of closed chromatin.

Mol Cell. 54(1):180-192
Shlyueva, D., Stampfel, G., Stark, A. (2014)

Transcriptional enhancers: from properties to genome-wide predictions.

Nat Rev Genet. 15(4):272-86
Seillet, C., Huntington, ND., Gangatirkar, P., Axelsson, E., Minnich, M., Brady, HJ., Busslinger, M., Smyth, MJ., Belz, GT., Carotta, S. (2014)

Differential requirement for Nfil3 during NK cell development.

J Immunol. 192(6):2667-76
Bots, M., Verbrugge, I., Martin, BP., Salmon, JM., Ghisi, M., Baker, A., Stanley, K., Shortt, J., Ossenkoppele, GJ., Zuber, J., Rappaport, AR., Atadja, P., Lowe, SW., Johnstone, RW. (2014)

Differentiation therapy for the treatment of t(8;21) acute myeloid leukemia using histone deacetylase inhibitors.

Blood. 123(9):1341-52
Schwickert, TA., Tagoh, H., Gültekin, S., Dakic, A., Axelsson, E., Minnich, M., Ebert, A., Werner, B., Roth, M., Cimmino, L., Dickins, RA., Zuber, J., Jaritz, M., Busslinger, M. (2014)

Stage-specific control of early B cell development by the transcription factor Ikaros.

Nat Immunol. 15(3):283-93
Bidaye, SS., Machacek, C., Wu, Y., Dickson, BJ. (2014)

Neuronal control of Drosophila walking direction.

Science. 344(6179):97-101
Breuss, M., Keays, DA. (2014)

Microtubules and neurodevelopmental disease: the movers and the makers.

Adv Exp Med Biol. 800:75-96
Howard, MF., Murakami, Y., Pagnamenta, AT., Daumer-Haas, C., Fischer, B., Hecht, J., Keays, DA., Knight, SJ., Kölsch, U., Krüger, U., Leiz, S., Maeda, Y., Mitchell, D., Mundlos, S., Phillips, JA., Robinson, PN., Kini, U., Taylor, JC., Horn, D., Kinoshita, T., Krawitz, PM. (2014)

Mutations in PGAP3 impair GPI-anchor maturation, causing a subtype of hyperphosphatasia with mental retardation.

Am J Hum Genet. 94(2):278-87
Wienerroither, S., Rauch, I., Rosebrock, F., Jamieson, AM., Bradner, J., Muhar, M., Zuber, J., Müller, M., Decker, T. (2014)

Regulation of NO synthesis, local inflammation, and innate immunity to pathogens by BET family proteins.

Mol Cell Biol. 34(3):415-27
Rembold, M., Ciglar, L., Yáñez-Cuna, JO., Zinzen, RP., Girardot, C., Jain, A., Welte, MA., Stark, A., Leptin, M., Furlong, EE. (2014)

A conserved role for Snail as a potentiator of active transcription.

Genes Dev. 28(2):167-81
Radics, J., Königsmaier, L., Marlovits, TC. (2014)

Structure of a pathogenic type 3 secretion system in action.

Nat Struct Mol Biol. 21(1):82-7
Cochella, L., Tursun, B., Hsieh, YW., Galindo, S., Johnston, RJ., Chuang, CF., Hobert, O. (2014)

Two distinct types of neuronal asymmetries are controlled by the Caenorhabditis elegans zinc finger transcription factor die-1.

Genes Dev. 28(1):34-43
Stowers, JR., Fuhrmann, A., Hofbauer, M., Streinzer, M., Schmid, A., Dickinson, MH., Straw, AD. (2014)

Reverse Engineering Animal Vision with Virtual Reality and Genetics.

Computer. 14(190):38–45
Stark, A. (2013)

Regulatory Genomics - Decoding Drosophila Regulatory Sequences.

Biomed Tech (Berl). 58 Suppl 1
Jüschke, C., Dohnal, I., Pichler, P., Harzer, H., Swart, R., Ammerer, G., Mechtler, K., Knoblich, JA. (2013)

Transcriptome and proteome quantification of a tumor model provides novel insights into post-transcriptional gene regulation.

Genome Biol. 14(11):r133
Ebert, A., Medvedovic, J., Tagoh, H., Schwickert, TA., Busslinger, M. (2013)

Control of antigen receptor diversity through spatial regulation of V(D)J recombination.

Cold Spring Harb Symp Quant Biol. 78:11-21
Fellmann, C., Hoffmann, T., Sridhar, V., Hopfgartner, B., Muhar, M., Roth, M., Lai, DY., Barbosa, IA., Kwon, JS., Guan, Y., Sinha, N., Zuber, J. (2013)

An optimized microRNA backbone for effective single-copy RNAi.

Cell Rep. 5(6):1704-13
Zantke, J., Ishikawa-Fujiwara, T., Arboleda, E., Lohs, C., Schipany, K., Hallay, N., Straw, AD., Todo, T., Tessmar-Raible, K. (2013)

Circadian and circalunar clock interactions in a marine annelid.

Cell Rep. 5(1):99-113
Fuhrmann, J., Mierzwa, B., Trentini, DB., Spiess, S., Lehner, A., Charpentier, E., Clausen, T. (2013)

Structural basis for recognizing phosphoarginine and evolving residue-specific protein phosphatases in gram-positive bacteria.

Cell Rep. 3(6):1832-9
Bardet, AF., Steinmann, J., Bafna, S., Knoblich, JA., Zeitlinger, J., Stark, A. (2013)

Identification of transcription factor binding sites from ChIP-seq data at high resolution.

Bioinformatics. 29(21):2705-13
Simunovic, M., Mim, C., Marlovits, TC., Resch, G., Unger, VM., Voth, GA. (2013)

Protein-mediated transformation of lipid vesicles into tubular networks.

Biophys J. 105(3):711-9
Simon, A., Tanaka, EM. (2013)

Limb regeneration.

Wiley Interdiscip Rev Dev Biol. 2(2):291-300
Cabral, G., Sans, SS., Cowan, CR., Dammermann, A. (2013)

Multiple mechanisms contribute to centriole separation in C. elegans.

Curr Biol. 23(14):1380-7
Elsayad, K., Urich, A., Tan, PS., Nemethova, M., Small, JV., Unterrainer, K., Heinze, KG. (2013)

Spectrally coded optical nanosectioning (SpecON) with biocompatible metal-dielectric-coated substrates.

Proc Natl Acad Sci U S A. 110(50):20069-74
Knapp, D., Schulz, H., Rascon, CA., Volkmer, M., Scholz, J., Nacu, E., Le, M., Novozhilov, S., Tazaki, A., Protze, S., Jacob, T., Hubner, N., Habermann, B., Tanaka, EM. (2013)

Comparative transcriptional profiling of the axolotl limb identifies a tripartite regeneration-specific gene program.

PLoS One. 8(5):e61352
Jászai, J., Graupner, S., Tanaka, EM., Funk, RH., Huttner, WB., Brand, M., Corbeil, D. (2013)

Spatial distribution of prominin-1 (CD133)-positive cells within germinative zones of the vertebrate brain.

PLoS One. 8(5):e63457
Moruz, L., Pichler, P., Stranzl, T., Mechtler, K., Käll, L. (2013)

Optimized nonlinear gradients for reversed-phase liquid chromatography in shotgun proteomics.

Anal Chem. 85(16):7777-85
Bathellier, B., Tee, SP., Hrovat, C., Rumpel, S. (2013)

A multiplicative reinforcement learning model capturing learning dynamics and interindividual variability in mice.

Proc Natl Acad Sci U S A. 110(49):19950-5
Shi, J., Whyte, WA., Zepeda-Mendoza, CJ., Milazzo, JP., Shen, C., Roe, JS., Minder, JL., Mercan, F., Wang, E., Eckersley-Maslin, MA., Campbell, AE., Kawaoka, S., Shareef, S., Zhu, Z., Kendall, J., Muhar, M., Haslinger, C., Yu, M., Roeder, RG., Wigler, MH., Blobel, GA., Zuber, J., Spector, DL., Young, RA., Vakoc, CR. (2013)

Role of SWI/SNF in acute leukemia maintenance and enhancer-mediated Myc regulation.

Genes Dev. 27(24):2648-62
Fischer, RM., Fontinha, BM., Kirchmaier, S., Steger, J., Bloch, S., Inoue, D., Panda, S., Rumpel, S., Tessmar-Raible, K. (2013)

Co-expression of VAL- and TMT-opsins uncovers ancient photosensory interneurons and motorneurons in the vertebrate brain.

PLoS Biol. 11(6):e1001585
Mastny, M., Heuck, A., Kurzbauer, R., Heiduk, A., Boisguerin, P., Volkmer, R., Ehrmann, M., Rodrigues, CD., Rudner, DZ., Clausen, T. (2013)

CtpB assembles a gated protease tunnel regulating cell-cell signaling during spore formation in Bacillus subtilis.

Cell. 155(3):647-58
Conti, V., Carabalona, A., Pallesi-Pocachard, E., Parrini, E., Leventer, RJ., Buhler, E., McGillivray, G., Michel, FJ., Striano, P., Mei, D., Watrin, F., Lise, S., Pagnamenta, AT., Taylor, JC., Kini, U., Clayton-Smith, J., Novara, F., Zuffardi, O., Dobyns, WB., Scheffer, IE., Robertson, SP., Berkovic, SF., Represa, A., Keays, DA., Cardoso, C., Guerrini, R. (2013)

Periventricular heterotopia in 6q terminal deletion syndrome: role of the C6orf70 gene.

Brain. 136(Pt 11):3378-94
Moczulska, KE., Tinter-Thiede, J., Peter, M., Ushakova, L., Wernle, T., Bathellier, B., Rumpel, S. (2013)

Dynamics of dendritic spines in the mouse auditory cortex during memory formation and memory recall.

Proc Natl Acad Sci U S A. 110(45):18315-20
Roensch, K., Tazaki, A., Chara, O., Tanaka, EM. (2013)

Progressive specification rather than intercalation of segments during limb regeneration.

Science. 342(6164):1375-9
Yáñez-Cuna, JO., Kvon, EZ., Stark, A. (2013)

Deciphering the transcriptional cis-regulatory code.

Trends Genet. 29(1):11-22
Lin, CY., Chuang, CC., Hua, TE., Chen, CC., Dickson, BJ., Greenspan, RJ., Chiang, AS. (2013)

A comprehensive wiring diagram of the protocerebral bridge for visual information processing in the Drosophila brain.

Cell Rep. 3(5):1739-53
Lauwers, M., Pichler, P., Edelman, NB., Resch, GP., Ushakova, L., Salzer, MC., Heyers, D., Saunders, M., Shaw, J., Keays, DA. (2013)

An iron-rich organelle in the cuticular plate of avian hair cells.

Curr Biol. 23(10):924-9
Schrödel, T., Prevedel, R., Aumayr, K., Zimmer, M., Vaziri, A. (2013)

Brain-wide 3D imaging of neuronal activity in Caenorhabditis elegans with sculpted light.

Nat Methods. 10(10):1013-20
Mair, B., Popow, J., Mechtler, K., Weitzer, S., Martinez, J. (2013)

Intron excision from precursor tRNA molecules in mammalian cells requires ATP hydrolysis and phosphorylation of tRNA-splicing endonuclease components.

Biochem Soc Trans. 41(4):831-7
Peter, M., Bathellier, B., Fontinha, B., Pliota, P., Haubensak, W., Rumpel, S. (2013)

Transgenic mouse models enabling photolabeling of individual neurons in vivo.

PLoS One. 8(4):e62132
Medvedovic, J., Ebert, A., Tagoh, H., Tamir, IM., Schwickert, TA., Novatchkova, M., Sun, Q., Huis In 't Veld, PJ., Guo, C., Yoon, HS., Denizot, Y., Holwerda, SJ., de Laat, W., Cogné, M., Shi, Y., Alt, FW., Busslinger, M. (2013)

Flexible long-range loops in the VH gene region of the Igh locus facilitate the generation of a diverse antibody repertoire.

Immunity. 39(2):229-44
Frelin, C., Herrington, R., Janmohamed, S., Barbara, M., Tran, G., Paige, CJ., Benveniste, P., Zuñiga-Pflücker, JC., Souabni, A., Busslinger, M., Iscove, NN. (2013)

GATA-3 regulates the self-renewal of long-term hematopoietic stem cells.

Nat Immunol. 14(10):1037-44
Nishiyama, T., Sykora, MM., Huis in 't Veld, PJ., Mechtler, K., Peters, JM. (2013)

Aurora B and Cdk1 mediate Wapl activation and release of acetylated cohesin from chromosomes by phosphorylating Sororin.

Proc Natl Acad Sci U S A. 110(33):13404-9
Stewart, R., Rascón, CA., Tian, S., Nie, J., Barry, C., Chu, LF., Ardalani, H., Wagner, RJ., Probasco, MD., Bolin, JM., Leng, N., Sengupta, S., Volkmer, M., Habermann, B., Tanaka, EM., Thomson, JA., Dewey, CN. (2013)

Comparative RNA-seq analysis in the unsequenced axolotl: the oncogene burst highlights early gene expression in the blastema.

PLoS Comput Biol. 9(3):e1002936
Kollmann, K., Heller, G., Schneckenleithner, C., Warsch, W., Scheicher, R., Ott, RG., Schäfer, M., Fajmann, S., Schlederer, M., Schiefer, AI., Reichart, U., Mayerhofer, M., Hoeller, C., Zöchbauer-Müller, S., Kerjaschki, D., Bock, C., Kenner, L., Hoefler, G., Freissmuth, M., Green, AR., Moriggl, R., Busslinger, M., Malumbres, M., Sexl, V. (2013)

A kinase-independent function of CDK6 links the cell cycle to tumor angiogenesis.

Cancer Cell. 24(2):167-81
Tedeschi, A., Wutz, G., Huet, S., Jaritz, M., Wuensche, A., Schirghuber, E., Davidson, IF., Tang, W., Cisneros, DA., Bhaskara, V., Nishiyama, T., Vaziri, A., Wutz, A., Ellenberg, J., Peters, JM. (2013)

Wapl is an essential regulator of chromatin structure and chromosome segregation.

Nature. 501(7468):564-8
Earnshaw, WC., Allshire, RC., Black, BE., Bloom, K., Brinkley, BR., Brown, W., Cheeseman, IM., Choo, KH., Copenhaver, GP., Deluca, JG., Desai, A., Diekmann, S., Erhardt, S., Fitzgerald-Hayes, M., Foltz, D., Fukagawa, T., Gassmann, R., Gerlich, DW., Glover, DM., Gorbsky, GJ., Harrison, SC., Heun, P., Hirota, T., Jansen, LE., Karpen, G., Kops, GJ., Lampson, MA., Lens, SM., Losada, A., Luger, K., Maiato, H., Maddox, PS., Margolis, RL., Masumoto, H., McAinsh, AD., Mellone, BG., Meraldi, P., Musacchio, A., Oegema, K., O'Neill, RJ., Salmon, ED., Scott, KC., Straight, AF., Stukenberg, PT., Sullivan, BA., Sullivan, KF., Sunkel, CE., Swedlow, JR., Walczak, CE., Warburton, PE., Westermann, S., Willard, HF., Wordeman, L., Yanagida, M., Yen, TJ., Yoda, K., Cleveland, DW. (2013)

Esperanto for histones: CENP-A, not CenH3, is the centromeric histone H3 variant.

Chromosome Res. 21(2):101-6
Censi, A., Straw, AD., Sayaman, RW., Murray, RM., Dickinson, MH. (2013)

Discriminating external and internal causes for heading changes in freely flying Drosophila.

PLoS Comput Biol. 9(2):e1002891
Khattak, S., Sandoval-Guzmán, T., Stanke, N., Protze, S., Tanaka, EM., Lindemann, D. (2013)

Foamy virus for efficient gene transfer in regeneration studies.

BMC Dev Biol. 13:17
Ohtsuka, N., Badurek, S., Busslinger, M., Benes, FM., Minichiello, L., Rudolph, U. (2013)

GABAergic neurons regulate lateral ventricular development via transcription factor Pax5.

Genesis. 51(4):234-45
Osman, K., Roitinger, E., Yang, J., Armstrong, S., Mechtler, K., Franklin, FC. (2013)

Analysis of meiotic protein complexes from Arabidopsis and Brassica using affinity-based proteomics.

Methods Mol Biol. 990:215-26
Frye, JJ., Brown, NG., Petzold, G., Watson, ER., Grace, CR., Nourse, A., Jarvis, MA., Kriwacki, RW., Peters, JM., Stark, H., Schulman, BA. (2013)

Electron microscopy structure of human APC/C(CDH1)-EMI1 reveals multimodal mechanism of E3 ligase shutdown.

Nat Struct Mol Biol. 20(7):827-35
Zhu, Y., Carido, M., Meinhardt, A., Kurth, T., Karl, MO., Ader, M., Tanaka, EM. (2013)

Three-dimensional neuroepithelial culture from human embryonic stem cells and its use for quantitative conversion to retinal pigment epithelium.

PLoS One. 8(1):e54552
Ivanov, AR., Colangelo, CM., Dufresne, CP., Friedman, DB., Lilley, KS., Mechtler, K., Phinney, BS., Rose, KL., Rudnick, PA., Searle, BC., Shaffer, SA., Weintraub, ST. (2013)

Interlaboratory studies and initiatives developing standards for proteomics.

Proteomics. 13(6):904-9
Frese, CK., Zhou, H., Taus, T., Altelaar, AF., Mechtler, K., Heck, AJ., Mohammed, S. (2013)

Unambiguous phosphosite localization using electron-transfer/higher-energy collision dissociation (EThcD).

J Proteome Res. 12(3):1520-5
Maisak, MS., Haag, J., Ammer, G., Serbe, E., Meier, M., Leonhardt, A., Schilling, T., Bahl, A., Rubin, GM., Nern, A., Dickson, BJ., Reiff, DF., Hopp, E., Borst, A. (2013)

A directional tuning map of Drosophila elementary motion detectors.

Nature. 500(7461):212-6
Treiber, CD., Salzer, M., Breuss, M., Ushakova, L., Lauwers, M., Edelman, N., Keays, DA. (2013)

High resolution anatomical mapping confirms the absence of a magnetic sense system in the rostral upper beak of pigeons.

Commun Integr Biol. 6(4):e24859
Masson, F., Minnich, M., Olshansky, M., Bilic, I., Mount, AM., Kallies, A., Speed, TP., Busslinger, M., Nutt, SL., Belz, GT. (2013)

Id2-mediated inhibition of E2A represses memory CD8+ T cell differentiation.

J Immunol. 190(9):4585-94
Gramstrup Petersen, J., Rojo Romanos, T., Juozaityte, V., Redo Riveiro, A., Hums, I., Traunmüller, L., Zimmer, M., Pocock, R. (2013)

EGL-13/SoxD specifies distinct O2 and CO2 sensory neuron fates in Caenorhabditis elegans.

PLoS Genet. 9(5):e1003511
Lin, HH., Chu, LA., Fu, TF., Dickson, BJ., Chiang, AS. (2013)

Parallel neural pathways mediate CO2 avoidance responses in Drosophila.

Science. 340(6138):1338-41
Esteghamat, F., Gillemans, N., Bilic, I., van den Akker, E., Cantù, I., van Gent, T., Klingmüller, U., van Lom, K., von Lindern, M., Grosveld, F., Bryn van Dijk, T., Busslinger, M., Philipsen, S. (2013)

Erythropoiesis and globin switching in compound Klf1::Bcl11a mutant mice.

Blood. 121(13):2553-62
Watkins-Chow, DE., Cooke, J., Pidsley, R., Edwards, A., Slotkin, R., Leeds, KE., Mullen, R., Baxter, LL., Campbell, TG., Salzer, MC., Biondini, L., Gibney, G., Phan Dinh Tuy, F., Chelly, J., Morris, HD., Riegler, J., Lythgoe, MF., Arkell, RM., Loreni, F., Flint, J., Pavan, WJ., Keays, DA. (2013)

Mutation of the diamond-blackfan anemia gene Rps7 in mouse results in morphological and neuroanatomical phenotypes.

PLoS Genet. 9(1):e1003094
Hanada, T., Weitzer, S., Mair, B., Bernreuther, C., Wainger, BJ., Ichida, J., Hanada, R., Orthofer, M., Cronin, SJ., Komnenovic, V., Minis, A., Sato, F., Mimata, H., Yoshimura, A., Tamir, I., Rainer, J., Kofler, R., Yaron, A., Eggan, KC., Woolf, CJ., Glatzel, M., Herbst, R., Martinez, J., Penninger, JM. (2013)

CLP1 links tRNA metabolism to progressive motor-neuron loss.

Nature. 495(7442):474-80
Shi, J., Wang, E., Zuber, J., Rappaport, A., Taylor, M., Johns, C., Lowe, SW., Vakoc, CR. (2013)

The Polycomb complex PRC2 supports aberrant self-renewal in a mouse model of MLL-AF9;Nras(G12D) acute myeloid leukemia.

Oncogene. 32(7):930-8
Reiter, W., Klopf, E., De Wever, V., Anrather, D., Petryshyn, A., Roetzer, A., Niederacher, G., Roitinger, E., Dohnal, I., Görner, W., Mechtler, K., Brocard, C., Schüller, C., Ammerer, G. (2013)

Yeast protein phosphatase 2A-Cdc55 regulates the transcriptional response to hyperosmolarity stress by regulating Msn2 and Msn4 chromatin recruitment.

Mol Cell Biol. 33(5):1057-72
Malvezzi, F., Litos, G., Schleiffer, A., Heuck, A., Mechtler, K., Clausen, T., Westermann, S. (2013)

A structural basis for kinetochore recruitment of the Ndc80 complex via two distinct centromere receptors.

EMBO J. 32(3):409-23
Gazda, L., Pokrzywa, W., Hellerschmied, D., Löwe, T., Forné, I., Mueller-Planitz, F., Hoppe, T., Clausen, T. (2013)

The myosin chaperone UNC-45 is organized in tandem modules to support myofilament formation in C. elegans.

Cell. 152(1-2):183-95
Nacu, E., Glausch, M., Le, HQ., Damanik, FF., Schuez, M., Knapp, D., Khattak, S., Richter, T., Tanaka, EM. (2013)

Connective tissue cells, but not muscle cells, are involved in establishing the proximo-distal outcome of limb regeneration in the axolotl.

Development. 140(3):513-8
Arnold, CD., Gerlach, D., Stelzer, C., Boryń, ŁM., Rath, M., Stark, A. (2013)

Genome-wide quantitative enhancer activity maps identified by STARR-seq.

Science. 339(6123):1074-7
Hwang, SS., Kim, YU., Lee, S., Jang, SW., Kim, MK., Koh, BH., Lee, W., Kim, J., Souabni, A., Busslinger, M., Lee, GR. (2013)

Transcription factor YY1 is essential for regulation of the Th2 cytokine locus and for Th2 cell differentiation.

Proc Natl Acad Sci U S A. 110(1):276-81
Lampert, F., Mieck, C., Alushin, GM., Nogales, E., Westermann, S. (2013)

Molecular requirements for the formation of a kinetochore-microtubule interface by Dam1 and Ndc80 complexes.

J Cell Biol. 200(1):21-30
Kragl, M., Roensch, K., Nüsslein, I., Tazaki, A., Taniguchi, Y., Tarui, H., Hayashi, T., Agata, K., Tanaka, EM. (2013)

Muscle and connective tissue progenitor populations show distinct Twist1 and Twist3 expression profiles during axolotl limb regeneration.

Dev Biol. 373(1):196-204
Kazmar, T., Kvon EZ., Stark, A., Lampert, CH.. (2013)

Drosophila Embryo Stage Annotation using Label Propagation

International Conference on Computer Vision (ICCV). Springer. Dec:1089–1096
Whelan, G., Kreidl, E., Peters, JM., Eichele, G. (2012)

The non-redundant function of cohesin acetyltransferase Esco2: some answers and new questions.

Nucleus. 3(4):330-4
Herrmann, H., Blatt, K., Shi, J., Gleixner, KV., Cerny-Reiterer, S., Müllauer, L., Vakoc, CR., Sperr, WR., Horny, HP., Bradner, JE., Zuber, J., Valent, P. (2012)

Small-molecule inhibition of BRD4 as a new potent approach to eliminate leukemic stem- and progenitor cells in acute myeloid leukemia AML.

Oncotarget. 3(12):1588-99
Epperlein, HH., Khattak, S., Knapp, D., Tanaka, EM., Malashichev, YB. (2012)

Neural crest does not contribute to the neck and shoulder in the axolotl (Ambystoma mexicanum).

PLoS One. 7(12):e52244
Plath, K., Srivastava, D., Alvarez-Buylla, A., Tanaka, EM., Kriegstein, AR. (2012)

Stem cells in the land of the rising sun: ISSCR 2012.

Cell Stem Cell. 11(5):607-14
Tapia, N., Reinhardt, P., Duemmler, A., Wu, G., Araúzo-Bravo, MJ., Esch, D., Greber, B., Cojocaru, V., Rascon, CA., Tazaki, A., Kump, K., Voss, R., Tanaka, EM., Schöler, HR. (2012)

Reprogramming to pluripotency is an ancient trait of vertebrate Oct4 and Pou2 proteins.

Nat Commun. 3:1279
Breuss, M., Heng, JI., Poirier, K., Tian, G., Jaglin, XH., Qu, Z., Braun, A., Gstrein, T., Ngo, L., Haas, M., Bahi-Buisson, N., Moutard, ML., Passemard, S., Verloes, A., Gressens, P., Xie, Y., Robson, KJ., Rani, DS., Thangaraj, K., Clausen, T., Chelly, J., Cowan, NJ., Keays, DA. (2012)

Mutations in the β-tubulin gene TUBB5 cause microcephaly with structural brain abnormalities.

Cell Rep. 2(6):1554-62
Hnisz, D., Bardet, AF., Nobile, CJ., Petryshyn, A., Glaser, W., Schöck, U., Stark, A., Kuchler, K. (2012)

A histone deacetylase adjusts transcription kinetics at coding sequences during Candida albicans morphogenesis.

PLoS Genet. 8(12):e1003118
Neely, GG., Rao, S., Costigan, M., Mair, N., Racz, I., Milinkeviciute, G., Meixner, A., Nayanala, S., Griffin, RS., Belfer, I., Dai, F., Smith, S., Diatchenko, L., Marengo, S., Haubner, BJ., Novatchkova, M., Gibson, D., Maixner, W., Pospisilik, JA., Hirsch, E., Whishaw, IQ., Zimmer, A., Gupta, V., Sasaki, J., Kanaho, Y., Sasaki, T., Kress, M., Woolf, CJ., Penninger, JM. (2012)

Construction of a global pain systems network highlights phospholipid signaling as a regulator of heat nociception.

PLoS Genet. 8(12):e1003071
Pichler, P., Mazanek, M., Dusberger, F., Weilnböck, L., Huber, CG., Stingl, C., Luider, TM., Straube, WL., Köcher, T., Mechtler, K. (2012)

SIMPATIQCO: a server-based software suite which facilitates monitoring the time course of LC-MS performance metrics on Orbitrap instruments.

J Proteome Res. 11(11):5540-7
Peters, JM., Nishiyama, T. (2012)

Sister chromatid cohesion.

Cold Spring Harb Perspect Biol. 4(11)
Knapp, D., Tanaka, EM. (2012)

Regeneration and reprogramming.

Curr Opin Genet Dev. 22(5):485-93
McHedlishvili, L., Mazurov, V., Tanaka, EM. (2012)

Reconstitution of the central nervous system during salamander tail regeneration from the implanted neurospheres.

Methods Mol Biol. 916:197-202
Berger, C., Harzer, H., Burkard, TR., Steinmann, J., van der Horst, S., Laurenson, AS., Novatchkova, M., Reichert, H., Knoblich, JA. (2012)

FACS purification and transcriptome analysis of drosophila neural stem cells reveals a role for Klumpfuss in self-renewal.

Cell Rep. 2(2):407-18
Pagnamenta, AT., Murray, JE., Yoon, G., Sadighi Akha, E., Harrison, V., Bicknell, LS., Ajilogba, K., Stewart, H., Kini, U., Taylor, JC., Keays, DA., Jackson, AP., Knight, SJ. (2012)

A novel nonsense CDK5RAP2 mutation in a Somali child with primary microcephaly and sensorineural hearing loss.

Am J Med Genet A. 158A(10):2577-82
Yáñez-Cuna, JO., Dinh, HQ., Kvon, EZ., Shlyueva, D., Stark, A. (2012)

Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding.

Genome Res. 22(10):2018-30
Dal Santo, S., Stampfl, H., Krasensky, J., Kempa, S., Gibon, Y., Petutschnig, E., Rozhon, W., Heuck, A., Clausen, T., Jonak, C. (2012)

Stress-induced GSK3 regulates the redox stress response by phosphorylating glucose-6-phosphate dehydrogenase in Arabidopsis.

Plant Cell. 24(8):3380-92
van der Harst, P., Zhang, W., Mateo Leach, I., Rendon, A., Verweij, N., Sehmi, J., Paul, DS., Elling, U., Allayee, H., Li, X., Radhakrishnan, A., Tan, ST., Voss, K., Weichenberger, CX., Albers, CA., Al-Hussani, A., Asselbergs, FW., Ciullo, M., Danjou, F., Dina, C., Esko, T., Evans, DM., Franke, L., Gögele, M., Hartiala, J., Hersch, M., Holm, H., Hottenga, JJ., Kanoni, S., Kleber, ME., Lagou, V., Langenberg, C., Lopez, LM., Lyytikäinen, LP., Melander, O., Murgia, F., Nolte, IM., O'Reilly, PF., Padmanabhan, S., Parsa, A., Pirastu, N., Porcu, E., Portas, L., Prokopenko, I., Ried, JS., Shin, SY., Tang, CS., Teumer, A., Traglia, M., Ulivi, S., Westra, HJ., Yang, J., Zhao, JH., Anni, F., Abdellaoui, A., Attwood, A., Balkau, B., Bandinelli, S., Bastardot, F., Benyamin, B., Boehm, BO., Cookson, WO., Das, D., de Bakker, PI., de Boer, RA., de Geus, EJ., de Moor, MH., Dimitriou, M., Domingues, FS., Döring, A., Engström, G., Eyjolfsson, GI., Ferrucci, L., Fischer, K., Galanello, R., Garner, SF., Genser, B., Gibson, QD., Girotto, G., Gudbjartsson, DF., Harris, SE., Hartikainen, AL., Hastie, CE., Hedblad, B., Illig, T., Jolley, J., Kähönen, M., Kema, IP., Kemp, JP., Liang, L., Lloyd-Jones, H., Loos, RJ., Meacham, S., Medland, SE., Meisinger, C., Memari, Y., Mihailov, E., Miller, K., Moffatt, MF., Nauck, M., Novatchkova, M., Nutile, T., Olafsson, I., Onundarson, PT., Parracciani, D., Penninx, BW., Perseu, L., Piga, A., Pistis, G., Pouta, A., Puc, U., Raitakari, O., Ring, SM., Robino, A., Ruggiero, D., Ruokonen, A., Saint-Pierre, A., Sala, C., Salumets, A., Sambrook, J., Schepers, H., Schmidt, CO., Silljé, HH., Sladek, R., Smit, JH., Starr, JM., Stephens, J., Sulem, P., Tanaka, T., Thorsteinsdottir, U., Tragante, V., van Gilst, WH., van Pelt, LJ., van Veldhuisen, DJ., Völker, U., Whitfield, JB., Willemsen, G., Winkelmann, BR., Wirnsberger, G., Algra, A., Cucca, F., d'Adamo, AP., Danesh, J., Deary, IJ., Dominiczak, AF., Elliott, P., Fortina, P., Froguel, P., Gasparini, P., Greinacher, A., Hazen, SL., Jarvelin, MR., Khaw, KT., Lehtimäki, T., Maerz, W., Martin, NG., Metspalu, A., Mitchell, BD., Montgomery, GW., Moore, C., Navis, G., Pirastu, M., Pramstaller, PP., Ramirez-Solis, R., Schadt, E., Scott, J., Shuldiner, AR., Smith, GD., Smith, JG., Snieder, H., Sorice, R., Spector, TD., Stefansson, K., Stumvoll, M., Tang, WH., Toniolo, D., Tönjes, A., Visscher, PM., Vollenweider, P., Wareham, NJ., Wolffenbuttel, BH., Boomsma, DI., Beckmann, JS., Dedoussis, GV., Deloukas, P., Ferreira, MA., Sanna, S., Uda, M., Hicks, AA., Penninger, JM., Gieger, C., Kooner, JS., Ouwehand, WH., Soranzo, N., Chambers, JC. (2012)

Seventy-five genetic loci influencing the human red blood cell.

Nature. 492(7429):369-75
Valent, P., Bonnet, D., De Maria, R., Lapidot, T., Copland, M., Melo, JV., Chomienne, C., Ishikawa, F., Schuringa, JJ., Stassi, G., Huntly, B., Herrmann, H., Soulier, J., Roesch, A., Schuurhuis, GJ., Wöhrer, S., Arock, M., Zuber, J., Cerny-Reiterer, S., Johnsen, HE., Andreeff, M., Eaves, C. (2012)

Cancer stem cell definitions and terminology: the devil is in the details.

Nat Rev Cancer. 12(11):767-75
Mattarollo, SR., West, AC., Steegh, K., Duret, H., Paget, C., Martin, B., Matthews, GM., Shortt, J., Chesi, M., Bergsagel, PL., Bots, M., Zuber, J., Lowe, SW., Johnstone, RW., Smyth, MJ. (2012)

NKT cell adjuvant-based tumor vaccine for treatment of myc oncogene-driven mouse B-cell lymphoma.

Blood. 120(15):3019-29
Uzunova, K., Dye, BT., Schutz, H., Ladurner, R., Petzold, G., Toyoda, Y., Jarvis, MA., Brown, NG., Poser, I., Novatchkova, M., Mechtler, K., Hyman, AA., Stark, H., Schulman, BA., Peters, JM. (2012)

APC15 mediates CDC20 autoubiquitylation by APC/C(MCC) and disassembly of the mitotic checkpoint complex.

Nat Struct Mol Biol. 19(11):1116-23
Köcher, T., Pichler, P., Swart, R., Mechtler, K. (2012)

Analysis of protein mixtures from whole-cell extracts by single-run nanoLC-MS/MS using ultralong gradients.

Nat Protoc. 7(5):882-90
Chelysheva, L., Vezon, D., Chambon, A., Gendrot, G., Pereira, L., Lemhemdi, A., Vrielynck, N., Le Guin, S., Novatchkova, M., Grelon, M. (2012)

The Arabidopsis HEI10 is a new ZMM protein related to Zip3.

PLoS Genet. 8(7):e1002799
Krüttner, S., Stepien, B., Noordermeer, JN., Mommaas, MA., Mechtler, K., Dickson, BJ., Keleman, K. (2012)

Drosophila CPEB Orb2A mediates memory independent of Its RNA-binding domain.

Neuron. 76(2):383-95
Bathellier, B., Ushakova, L., Rumpel, S. (2012)

Discrete neocortical dynamics predict behavioral categorization of sounds.

Neuron. 76(2):435-49
Hoyler, T., Klose, CS., Souabni, A., Turqueti-Neves, A., Pfeifer, D., Rawlins, EL., Voehringer, D., Busslinger, M., Diefenbach, A. (2012)

The transcription factor GATA-3 controls cell fate and maintenance of type 2 innate lymphoid cells.

Immunity. 37(4):634-48
Vinzenz, M., Nemethova, M., Schur, F., Mueller, J., Narita, A., Urban, E., Winkler, C., Schmeiser, C., Koestler, SA., Rottner, K., Resch, GP., Maeda, Y., Small, JV. (2012)

Actin branching in the initiation and maintenance of lamellipodia.

J Cell Sci. 125(Pt 11):2775-85
Latos, PA., Pauler, FM., Koerner, MV., Şenergin, HB., Hudson, QJ., Stocsits, RR., Allhoff, W., Stricker, SH., Klement, RM., Warczok, KE., Aumayr, K., Pasierbek, P., Barlow, DP. (2012)

Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing.

Science. 338(6113):1469-72
Protze, S., Khattak, S., Poulet, C., Lindemann, D., Tanaka, EM., Ravens, U. (2012)

A new approach to transcription factor screening for reprogramming of fibroblasts to cardiomyocyte-like cells.

J Mol Cell Cardiol. 53(3):323-32
Dow, LE., Premsrirut, PK., Zuber, J., Fellmann, C., McJunkin, K., Miething, C., Park, Y., Dickins, RA., Hannon, GJ., Lowe, SW. (2012)

A pipeline for the generation of shRNA transgenic mice.

Nat Protoc. 7(2):374-93
Tanaka, EM. (2012)

Regenerative biology: Skin, heal thyself.

Nature. 489(7417):508-10
McHedlishvili, L., Mazurov, V., Grassme, KS., Goehler, K., Robl, B., Tazaki, A., Roensch, K., Duemmler, A., Tanaka, EM. (2012)

Reconstitution of the central and peripheral nervous system during salamander tail regeneration.

Proc Natl Acad Sci U S A. 109(34):E2258-66
Keleman, K., Vrontou, E., Krüttner, S., Yu, JY., Kurtovic-Kozaric, A., Dickson, BJ. (2012)

Dopamine neurons modulate pheromone responses in Drosophila courtship learning.

Nature. 489(7414):145-9
Novatchkova, M., Tomanov, K., Hofmann, K., Stuible, HP., Bachmair, A. (2012)

Update on sumoylation: defining core components of the plant SUMO conjugation system by phylogenetic comparison.

New Phytol. 195(1):23-31
Popow, J., Schleiffer, A., Martinez, J. (2012)

Diversity and roles of (t)RNA ligases.

Cell Mol Life Sci. 69(16):2657-70
Demczuk, A., Gauthier, MG., Veras, I., Kosiyatrakul, S., Schildkraut, CL., Busslinger, M., Bechhoefer, J., Norio, P. (2012)

Regulation of DNA replication within the immunoglobulin heavy-chain locus during B cell commitment.

PLoS Biol. 10(7):e1001360
Revilla-I-Domingo, R., Bilic, I., Vilagos, B., Tagoh, H., Ebert, A., Tamir, IM., Smeenk, L., Trupke, J., Sommer, A., Jaritz, M., Busslinger, M. (2012)

The B-cell identity factor Pax5 regulates distinct transcriptional programmes in early and late B lymphopoiesis.

EMBO J. 31(14):3130-46
Zimniak, T., Fitz, V., Zhou, H., Lampert, F., Opravil, S., Mechtler, K., Stolt-Bergner, P., Westermann, S. (2012)

Spatiotemporal regulation of Ipl1/Aurora activity by direct Cdk1 phosphorylation.

Curr Biol. 22(9):787-93
Peter, M., Scheuch, H., Burkard, TR., Tinter, J., Wernle, T., Rumpel, S. (2012)

Induction of immediate early genes in the mouse auditory cortex after auditory cued fear conditioning to complex sounds.

Genes Brain Behav. 11(3):314-24
Tennstaedt, A., Pöpsel, S., Truebestein, L., Hauske, P., Brockmann, A., Schmidt, N., Irle, I., Sacca, B., Niemeyer, CM., Brandt, R., Ksiezak-Reding, H., Tirniceriu, AL., Egensperger, R., Baldi, A., Dehmelt, L., Kaiser, M., Huber, R., Clausen, T., Ehrmann, M. (2012)

Human high temperature requirement serine protease A1 (HTRA1) degrades tau protein aggregates.

J Biol Chem. 287(25):20931-41
Schleiffer, A., Maier, M., Litos, G., Lampert, F., Hornung, P., Mechtler, K., Westermann, S. (2012)

CENP-T proteins are conserved centromere receptors of the Ndc80 complex.

Nat Cell Biol. 14(6):604-13
Xue, W., Kitzing, T., Roessler, S., Zuber, J., Krasnitz, A., Schultz, N., Revill, K., Weissmueller, S., Rappaport, AR., Simon, J., Zhang, J., Luo, W., Hicks, J., Zender, L., Wang, XW., Powers, S., Wigler, M., Lowe, SW. (2012)

A cluster of cooperating tumor-suppressor gene candidates in chromosomal deletions.

Proc Natl Acad Sci U S A. 109(21):8212-7
Fernandez-Rodriguez, J., Marlovits, TC. (2012)

Induced heterodimerization and purification of two target proteins by a synthetic coiled-coil tag.

Protein Sci. 21(4):511-9
Bergerson, RJ., Collier, LS., Sarver, AL., Been, RA., Lugthart, S., Diers, MD., Zuber, J., Rappaport, AR., Nixon, MJ., Silverstein, KA., Fan, D., Lamblin, AF., Wolff, L., Kersey, JH., Delwel, R., Lowe, SW., O'Sullivan, MG., Kogan, SC., Adams, DJ., Largaespada, DA. (2012)

An insertional mutagenesis screen identifies genes that cooperate with Mll-AF9 in a murine leukemogenesis model.

Blood. 119(19):4512-23
Jafari, S., Alkhori, L., Schleiffer, A., Brochtrup, A., Hummel, T., Alenius, M. (2012)

Combinatorial activation and repression by seven transcription factors specify Drosophila odorant receptor expression.

PLoS Biol. 10(3):e1001280
Kvon, EZ., Stampfel, G., Yáñez-Cuna, JO., Dickson, BJ., Stark, A. (2012)

HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature.

Genes Dev. 26(9):908-13
Kosarewicz, A., Königsmaier, L., Marlovits, TC. (2012)

The blueprint of the type-3 injectisome.

Philos Trans R Soc Lond B Biol Sci. 367(1592):1140-54
Ferdous, M., Higgins, JD., Osman, K., Lambing, C., Roitinger, E., Mechtler, K., Armstrong, SJ., Perry, R., Pradillo, M., Cuñado, N., Franklin, FC. (2012)

Inter-homolog crossing-over and synapsis in Arabidopsis meiosis are dependent on the chromosome axis protein AtASY3.

PLoS Genet. 8(2):e1002507
Vaziri, A., Emiliani, V. (2012)

Reshaping the optical dimension in optogenetics.

Curr Opin Neurobiol. 22(1):128-37
Vilagos, B., Hoffmann, M., Souabni, A., Sun, Q., Werner, B., Medvedovic, J., Bilic, I., Minnich, M., Axelsson, E., Jaritz, M., Busslinger, M. (2012)

Essential role of EBF1 in the generation and function of distinct mature B cell types.

J Exp Med. 209(4):775-92
Treiber, CD., Salzer, MC., Riegler, J., Edelman, N., Sugar, C., Breuss, M., Pichler, P., Cadiou, H., Saunders, M., Lythgoe, M., Shaw, J., Keays, DA. (2012)

Clusters of iron-rich cells in the upper beak of pigeons are macrophages not magnetosensitive neurons.

Nature. 484(7394):367-70
Pagnamenta, AT., Lise, S., Harrison, V., Stewart, H., Jayawant, S., Quaghebeur, G., Deng, AT., Murphy, VE., Sadighi Akha, E., Rimmer, A., Mathieson, I., Knight, SJ., Kini, U., Taylor, JC., Keays, DA. (2012)

Exome sequencing can detect pathogenic mosaic mutations present at low allele frequencies.

J Hum Genet. 57(1):70-2
Wray, J., Hartmann, C. (2012)

WNTing embryonic stem cells.

Trends Cell Biol. 22(3):159-68
Whelan, G., Kreidl, E., Wutz, G., Egner, A., Peters, JM., Eichele, G. (2012)

Cohesin acetyltransferase Esco2 is a cell viability factor and is required for cohesion in pericentric heterochromatin.

EMBO J. 31(1):71-82
Bossinger, O., Cowan, CR. (2012)

Methods in cell biology: analysis of cell polarity in C. elegans embryos.

Methods Cell Biol. 107:207-38
Lai, JS., Lo, SJ., Dickson, BJ., Chiang, AS. (2012)

Auditory circuit in the Drosophila brain.

Proc Natl Acad Sci U S A. 109(7):2607-12
Malet, H., Canellas, F., Sawa, J., Yan, J., Thalassinos, K., Ehrmann, M., Clausen, T., Saibil, HR. (2012)

Newly folded substrates inside the molecular cage of the HtrA chaperone DegQ.

Nat Struct Mol Biol. 19(2):152-7
Glaser, SP., Lee, EF., Trounson, E., Bouillet, P., Wei, A., Fairlie, WD., Izon, DJ., Zuber, J., Rappaport, AR., Herold, MJ., Alexander, WS., Lowe, SW., Robb, L., Strasser, A. (2012)

Anti-apoptotic Mcl-1 is essential for the development and sustained growth of acute myeloid leukemia.

Genes Dev. 26(2):120-5
Bardet, AF., He, Q., Zeitlinger, J., Stark, A. (2011)

A computational pipeline for comparative ChIP-seq analyses.

Nat Protoc. 7(1):45-61
Qin, H., Suzuki, K., Nakata, M., Chikuma, S., Izumi, N., Huong, le T., Maruya, M., Fagarasan, S., Busslinger, M., Honjo, T., Nagaoka, H. (2011)

Activation-induced cytidine deaminase expression in CD4+ T cells is associated with a unique IL-10-producing subset that increases with age.

PLoS One. 6(12):e29141
Huang, R., Jaritz, M., Guenzl, P., Vlatkovic, I., Sommer, A., Tamir, IM., Marks, H., Klampfl, T., Kralovics, R., Stunnenberg, HG., Barlow, DP., Pauler, FM. (2011)

An RNA-Seq strategy to detect the complete coding and non-coding transcriptome including full-length imprinted macro ncRNAs.

PLoS One. 6(11):e27288
Elling, U., Taubenschmid, J., Wirnsberger, G., O'Malley, R., Demers, SP., Vanhaelen, Q., Shukalyuk, AI., Schmauss, G., Schramek, D., Schnuetgen, F., von Melchner, H., Ecker, JR., Stanford, WL., Zuber, J., Stark, A., Penninger, JM. (2011)

Forward and reverse genetics through derivation of haploid mouse embryonic stem cells.

Cell Stem Cell. 9(6):563-74
Taus, T., Köcher, T., Pichler, P., Paschke, C., Schmidt, A., Henrich, C., Mechtler, K. (2011)

Universal and confident phosphorylation site localization using phosphoRS.

J Proteome Res. 10(12):5354-62
Grosstessner-Hain, K., Hegemann, B., Novatchkova, M., Rameseder, J., Joughin, BA., Hudecz, O., Roitinger, E., Pichler, P., Kraut, N., Yaffe, MB., Peters, JM., Mechtler, K. (2011)

Quantitative phospho-proteomics to investigate the polo-like kinase 1-dependent phospho-proteome.

Mol Cell Proteomics. 10(11):M111.008540
Hegemann, B., Hutchins, JR., Hudecz, O., Novatchkova, M., Rameseder, J., Sykora, MM., Liu, S., Mazanek, M., Lénárt, P., Hériché, JK., Poser, I., Kraut, N., Hyman, AA., Yaffe, MB., Mechtler, K., Peters, JM. (2011)

Systematic phosphorylation analysis of human mitotic protein complexes.

Sci Signal. 4(198):rs12
Nacu, E., Tanaka, EM. (2011)

Limb regeneration: a new development?

Annu Rev Cell Dev Biol. 27:409-40
Schönbauer, C., Distler, J., Jährling, N., Radolf, M., Dodt, HU., Frasch, M., Schnorrer, F. (2011)

Spalt mediates an evolutionarily conserved switch to fibrillar muscle fate in insects.

Nature. 479(7373):406-9
Edwards, A., Treiber, CD., Breuss, M., Pidsley, R., Huang, GJ., Cleak, J., Oliver, PL., Flint, J., Keays, DA. (2011)

Cytoarchitectural disruption of the superior colliculus and an enlarged acoustic startle response in the Tuba1a mutant mouse.

Neuroscience. 195:191-200
Mechtcheriakova, D., Sobanov, Y., Holtappels, G., Bajna, E., Svoboda, M., Jaritz, M., Bachert, C., Jensen-Jarolim, E. (2011)

Activation-induced cytidine deaminase (AID)-associated multigene signature to assess impact of AID in etiology of diseases with inflammatory component.

PLoS One. 6(10):e25611
Zuber, J., Shi, J., Wang, E., Rappaport, AR., Herrmann, H., Sison, EA., Magoon, D., Qi, J., Blatt, K., Wunderlich, M., Taylor, MJ., Johns, C., Chicas, A., Mulloy, JC., Kogan, SC., Brown, P., Valent, P., Bradner, JE., Lowe, SW., Vakoc, CR. (2011)

RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukaemia.

Nature. 478(7370):524-8
Lindblad-Toh, K., Garber, M., Zuk, O., Lin, MF., Parker, BJ., Washietl, S., Kheradpour, P., Ernst, J., Jordan, G., Mauceli, E., Ward, LD., Lowe, CB., Holloway, AK., Clamp, M., Gnerre, S., Alföldi, J., Beal, K., Chang, J., Clawson, H., Cuff, J., Di Palma, F., Fitzgerald, S., Flicek, P., Guttman, M., Hubisz, MJ., Jaffe, DB., Jungreis, I., Kent, WJ., Kostka, D., Lara, M., Martins, AL., Massingham, T., Moltke, I., Raney, BJ., Rasmussen, MD., Robinson, J., Stark, A., Vilella, AJ., Wen, J., Xie, X., Zody, MC., Baldwin, J., Bloom, T., Chin, CW., Heiman, D., Nicol, R., Nusbaum, C., Young, S., Wilkinson, J., Worley, KC., Kovar, CL., Muzny, DM., Gibbs, RA., Cree, A., Dihn, HH., Fowler, G., Jhangiani, S., Joshi, V., Lee, S., Lewis, LR., Nazareth, LV., Okwuonu, G., Santibanez, J., Warren, WC., Mardis, ER., Weinstock, GM., Wilson, RK., Delehaunty, K., Dooling, D., Fronik, C., Fulton, L., Fulton, B., Graves, T., Minx, P., Sodergren, E., Birney, E., Margulies, EH., Herrero, J., Green, ED., Haussler, D., Siepel, A., Goldman, N., Pollard, KS., Pedersen, JS., Lander, ES., Kellis, M. (2011)

A high-resolution map of human evolutionary constraint using 29 mammals.

Nature. 478(7370):476-82
Medvedovic, J., Ebert, A., Tagoh, H., Busslinger, M. (2011)

Pax5: a master regulator of B cell development and leukemogenesis.

Adv Immunol. 111:179-206
Merdanovic, M., Clausen, T., Kaiser, M., Huber, R., Ehrmann, M. (2011)

Protein quality control in the bacterial periplasm.

Annu Rev Microbiol. 65:149-68
Handler, D., Olivieri, D., Novatchkova, M., Gruber, FS., Meixner, K., Mechtler, K., Stark, A., Sachidanandam, R., Brennecke, J. (2011)

A systematic analysis of Drosophila TUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors.

EMBO J. 30(19):3977-93
Campbell, LJ., Suárez-Castillo, EC., Ortiz-Zuazaga, H., Knapp, D., Tanaka, EM., Crews, CM. (2011)

Gene expression profile of the regeneration epithelium during axolotl limb regeneration.

Dev Dyn. 240(7):1826-40
Hilgers, V., Perry, MW., Hendrix, D., Stark, A., Levine, M., Haley, B. (2011)

Neural-specific elongation of 3' UTRs during Drosophila development.

Proc Natl Acad Sci U S A. 108(38):15864-9
Grebien, F., Hantschel, O., Wojcik, J., Kaupe, I., Kovacic, B., Wyrzucki, AM., Gish, GD., Cerny-Reiterer, S., Koide, A., Beug, H., Pawson, T., Valent, P., Koide, S., Superti-Furga, G. (2011)

Targeting the SH2-kinase interface in Bcr-Abl inhibits leukemogenesis.

Cell. 147(2):306-19
Ng, K., Daigle, N., Bancaud, A., Ohhata, T., Humphreys, P., Walker, R., Ellenberg, J., Wutz, A. (2011)

A system for imaging the regulatory noncoding Xist RNA in living mouse embryonic stem cells.

Mol Biol Cell. 22(14):2634-45
Takada, Y., Gresh, L., Bozec, A., Ikeda, E., Kamiya, K., Watanabe, M., Kobayashi, K., Asano, K., Toyama, Y., Wagner, EF., Matsuo, K. (2011)

Interstitial lung disease induced by gefitinib and toll-like receptor ligands is mediated by Fra-1.

Oncogene. 30(36):3821-32
Böhmdorfer, G., Schleiffer, A., Brunmeir, R., Ferscha, S., Nizhynska, V., Kozák, J., Angelis, KJ., Kreil, DP., Schweizer, D. (2011)

GMI1, a structural-maintenance-of-chromosomes-hinge domain-containing protein, is involved in somatic homologous recombination in Arabidopsis.

Plant J. 67(3):420-33
Guo, C., Yoon, HS., Franklin, A., Jain, S., Ebert, A., Cheng, HL., Hansen, E., Despo, O., Bossen, C., Vettermann, C., Bates, JG., Richards, N., Myers, D., Patel, H., Gallagher, M., Schlissel, MS., Murre, C., Busslinger, M., Giallourakis, CC., Alt, FW. (2011)

CTCF-binding elements mediate control of V(D)J recombination.

Nature. 477(7365):424-30
Sawa, J., Malet, H., Krojer, T., Canellas, F., Ehrmann, M., Clausen, T. (2011)

Molecular adaptation of the DegQ protease to exert protein quality control in the bacterial cell envelope.

J Biol Chem. 286(35):30680-30690
Breitwieser, FP., Müller, A., Dayon, L., Köcher, T., Hainard, A., Pichler, P., Schmidt-Erfurth, U., Superti-Furga, G., Sanchez, JC., Mechtler, K., Bennett, KL., Colinge, J. (2011)

General statistical modeling of data from protein relative expression isobaric tags.

J Proteome Res. 10(6):2758-66
Alexander, J., Lim, D., Joughin, BA., Hegemann, B., Hutchins, JR., Ehrenberger, T., Ivins, F., Sessa, F., Hudecz, O., Nigg, EA., Fry, AM., Musacchio, A., Stukenberg, PT., Mechtler, K., Peters, JM., Smerdon, SJ., Yaffe, MB. (2011)

Spatial exclusivity combined with positive and negative selection of phosphorylation motifs is the basis for context-dependent mitotic signaling.

Sci Signal. 4(179):ra42
Resch, GP., Brandstetter, M., Pickl-Herk, AM., Königsmaier, L., Wonesch, VI., Urban, E. (2011)

Immersion freezing of biological specimens: rationale, principles, and instrumentation.

Cold Spring Harb Protoc. 2011(7):778-82
Tanaka, EM., Reddien, PW. (2011)

The cellular basis for animal regeneration.

Dev Cell. 21(1):172-85
Neumüller, RA., Richter, C., Fischer, A., Novatchkova, M., Neumüller, KG., Knoblich, JA. (2011)

Genome-wide analysis of self-renewal in Drosophila neural stem cells by transgenic RNAi.

Cell Stem Cell. 8(5):580-93
Zuber, J., Rappaport, AR., Luo, W., Wang, E., Chen, C., Vaseva, AV., Shi, J., Weissmueller, S., Fellmann, C., Fellman, C., Taylor, MJ., Weissenboeck, M., Graeber, TG., Kogan, SC., Vakoc, CR., Lowe, SW. (2011)

An integrated approach to dissecting oncogene addiction implicates a Myb-coordinated self-renewal program as essential for leukemia maintenance.

Genes Dev. 25(15):1628-40
Lampert, F., Westermann, S. (2011)

A blueprint for kinetochores - new insights into the molecular mechanics of cell division.

Nat Rev Mol Cell Biol. 12(7):407-12
Köcher, T., Pichler, P., Mazanek, M., Swart, R., Mechtler, K. (2011)

Altered Mascot search results by changing the m/z range of MS/MS spectra: analysis and potential applications.

Anal Bioanal Chem. 400(8):2339-47
Köcher, T. (2011)

Comment on 'Jobs for the boys'.

EMBO Rep. 12(6):488
Malle, E., Zhou, H., Neuhold, J., Spitzenberger, B., Klepsch, F., Pollak, T., Bergner, O., Ecker, GF., Stolt-Bergner, PC. (2011)

Random mutagenesis of the prokaryotic peptide transporter YdgR identifies potential periplasmic gating residues.

J Biol Chem. 286(26):23121-31
Lyashenko, N., Winter, M., Migliorini, D., Biechele, T., Moon, RT., Hartmann, C. (2011)

Differential requirement for the dual functions of β-catenin in embryonic stem cell self-renewal and germ layer formation.

Nat Cell Biol. 13(7):753-61
Häärä, O., Fujimori, S., Schmidt-Ullrich, R., Hartmann, C., Thesleff, I., Mikkola, ML. (2011)

Ectodysplasin and Wnt pathways are required for salivary gland branching morphogenesis.

Development. 138(13):2681-91
McManus, S., Ebert, A., Salvagiotto, G., Medvedovic, J., Sun, Q., Tamir, I., Jaritz, M., Tagoh, H., Busslinger, M. (2011)

The transcription factor Pax5 regulates its target genes by recruiting chromatin-modifying proteins in committed B cells.

EMBO J. 30(12):2388-404
Taschler, U., Radner, FP., Heier, C., Schreiber, R., Schweiger, M., Schoiswohl, G., Preiss-Landl, K., Jaeger, D., Reiter, B., Koefeler, HC., Wojciechowski, J., Theussl, C., Penninger, JM., Lass, A., Haemmerle, G., Zechner, R., Zimmermann, R. (2011)

Monoglyceride lipase deficiency in mice impairs lipolysis and attenuates diet-induced insulin resistance.

J Biol Chem. 286(20):17467-77
Fischer, H., Szabo, S., Scherz, J., Jaeger, K., Rossiter, H., Buchberger, M., Ghannadan, M., Hermann, M., Theussl, HC., Tobin, DJ., Wagner, EF., Tschachler, E., Eckhart, L. (2011)

Essential role of the keratinocyte-specific endonuclease DNase1L2 in the removal of nuclear DNA from hair and nails.

J Invest Dermatol. 131(6):1208-15
Stöger-Pollach, M., Treiber, CD., Resch, GP., Keays, DA., Ennen, I. (2011)

EMCD real space maps of Magnetospirillum magnetotacticum.

Micron. 42(5):456-60
Pappu, KS., Morey, M., Nern, A., Spitzweck, B., Dickson, BJ., Zipursky, SL. (2011)

Robo-3--mediated repulsive interactions guide R8 axons during Drosophila visual system development.

Proc Natl Acad Sci U S A. 108(18):7571-6
Jászai, J., Fargeas, CA., Graupner, S., Tanaka, EM., Brand, M., Huttner, WB., Corbeil, D. (2011)

Distinct and conserved prominin-1/CD133-positive retinal cell populations identified across species.

PLoS One. 6(3):e17590
He, Q., Bardet, AF., Patton, B., Purvis, J., Johnston, J., Paulson, A., Gogol, M., Stark, A., Zeitlinger, J. (2011)

High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species.

Nat Genet. 43(5):414-20
Köcher, T., Pichler, P., Swart, R., Mechtler, K. (2011)

Quality control in LC-MS/MS.

Proteomics. 11(6):1026-30
Kley, J., Schmidt, B., Boyanov, B., Stolt-Bergner, PC., Kirk, R., Ehrmann, M., Knopf, RR., Naveh, L., Adam, Z., Clausen, T. (2011)

Structural adaptation of the plant protease Deg1 to repair photosystem II during light exposure.

Nat Struct Mol Biol. 18(6):728-31
Gimferrer, I., Hu, T., Simmons, A., Wang, C., Souabni, A., Busslinger, M., Bender, TP., Hernandez-Hoyos, G., Alberola-Ila, J. (2011)

Regulation of GATA-3 expression during CD4 lineage differentiation.

J Immunol. 186(7):3892-8
York, AG., Ghitani, A., Vaziri, A., Davidson, MW., Shroff, H. (2011)

Confined activation and subdiffractive localization enables whole-cell PALM with genetically expressed probes.

Nat Methods. 8(4):327-33
Cretney, E., Xin, A., Shi, W., Minnich, M., Masson, F., Miasari, M., Belz, GT., Smyth, GK., Busslinger, M., Nutt, SL., Kallies, A. (2011)

The transcription factors Blimp-1 and IRF4 jointly control the differentiation and function of effector regulatory T cells.

Nat Immunol. 12(4):304-11
Bakiri, L., Reschke, MO., Gefroh, HA., Idarraga, MH., Polzer, K., Zenz, R., Schett, G., Wagner, EF. (2011)

Functions of Fos phosphorylation in bone homeostasis, cytokine response and tumourigenesis.

Oncogene. 30(13):1506-17
Pichler, P., Köcher, T., Holzmann, J., Möhring, T., Ammerer, G., Mechtler, K. (2011)

Improved precision of iTRAQ and TMT quantification by an axial extraction field in an Orbitrap HCD cell.

Anal Chem. 83(4):1469-74
Fellmann, C., Zuber, J., McJunkin, K., Chang, K., Malone, CD., Dickins, RA., Xu, Q., Hengartner, MO., Elledge, SJ., Hannon, GJ., Lowe, SW. (2011)

Functional identification of optimized RNAi triggers using a massively parallel sensor assay.

Mol Cell. 41(6):733-46
Truebestein, L., Tennstaedt, A., Mönig, T., Krojer, T., Canellas, F., Kaiser, M., Clausen, T., Ehrmann, M. (2011)

Substrate-induced remodeling of the active site regulates human HTRA1 activity.

Nat Struct Mol Biol. 18(3):386-8
Ebert, A., McManus, S., Tagoh, H., Medvedovic, J., Salvagiotto, G., Novatchkova, M., Tamir, I., Sommer, A., Jaritz, M., Busslinger, M. (2011)

The distal V(H) gene cluster of the Igh locus contains distinct regulatory elements with Pax5 transcription factor-dependent activity in pro-B cells.

Immunity. 34(2):175-87
Kramer, JM., Kochinke, K., Oortveld, MA., Marks, H., Kramer, D., de Jong, EK., Asztalos, Z., Westwood, JT., Stunnenberg, HG., Sokolowski, MB., Keleman, K., Zhou, H., van Bokhoven, H., Schenck, A. (2011)

Epigenetic regulation of learning and memory by Drosophila EHMT/G9a.

PLoS Biol. 9(1):e1000569
Khan, AG., Pickl-Herk, A., Gajdzik, L., Marlovits, TC., Fuchs, R., Blaas, D. (2011)

Entry of a heparan sulphate-binding HRV8 variant strictly depends on dynamin but not on clathrin, caveolin, and flotillin.

Virology. 412(1):55-67
von Philipsborn, AC., Liu, T., Yu, JY., Masser, C., Bidaye, SS., Dickson, BJ. (2011)

Neuronal control of Drosophila courtship song.

Neuron. 69(3):509-22
Hadjieconomou, D., Rotkopf, S., Alexandre, C., Bell, DM., Dickson, BJ., Salecker, I. (2011)

Flybow: genetic multicolor cell labeling for neural circuit analysis in Drosophila melanogaster.

Nat Methods. 8(3):260-6
Clausen, T., Kaiser, M., Huber, R., Ehrmann, M. (2011)

HTRA proteases: regulated proteolysis in protein quality control.

Nat Rev Mol Cell Biol. 12(3):152-62
Schraidt, O., Marlovits, TC. (2011)

Three-dimensional model of Salmonella's needle complex at subnanometer resolution.

Science. 331(6021):1192-5
Sampaio, JL., Gerl, MJ., Klose, C., Ejsing, CS., Beug, H., Simons, K., Shevchenko, A. (2011)

Membrane lipidome of an epithelial cell line.

Proc Natl Acad Sci U S A. 108(5):1903-7
Popow, J., Englert, M., Weitzer, S., Schleiffer, A., Mierzwa, B., Mechtler, K., Trowitzsch, S., Will, CL., Lührmann, R., Söll, D., Martinez, J. (2011)

HSPC117 is the essential subunit of a human tRNA splicing ligase complex.

Science. 331(6018):760-4
Hornung, P., Maier, M., Alushin, GM., Lander, GC., Nogales, E., Westermann, S. (2011)

Molecular architecture and connectivity of the budding yeast Mtw1 kinetochore complex.

J Mol Biol. 405(2):548-59
Buschhorn, BA., Petzold, G., Galova, M., Dube, P., Kraft, C., Herzog, F., Stark, H., Peters, JM. (2011)

Substrate binding on the APC/C occurs between the coactivator Cdh1 and the processivity factor Doc1.

Nat Struct Mol Biol. 18(1):6-13
Agrelo R. (2011)

X Inactivation and Progenitor Cancer Cells

Cancers. 3(2):2169-2175
Elsayad, K., Suplata, M., Heinze, KG. (2011)

Using MATLAB to Achieve Nanoscale Optical Sectioning in the Vicinity of Metamaterial Substrates by Simulating Emitter-Substrate Interactions

Engineering Education and Research Using MATLAB.
Wincent, J., Bruno, DL., van Bon, BW., Bremer, A., Stewart, H., Bongers, EM., Ockeloen, CW., Willemsen, MH., Keays, DD., Baird, G., Newbury, DF., Kleefstra, T., Marcelis, C., Kini, U., Stark, Z., Savarirayan, R., Sheffield, LJ., Zuffardi, O., Slater, HR., de Vries, BB., Knight, SJ., Anderlid, BM., Schoumans, J. (2010)

Sixteen New Cases Contributing to the Characterization of Patients with Distal 22q11.2 Microduplications.

Mol Syndromol. 1(5):246-254
Antos, CL., Tanaka, EM. (2010)

Vertebrates that regenerate as models for guiding stem cels.

Adv Exp Med Biol. 695:184-214
Huber, MA., Maier, HJ., Alacakaptan, M., Wiedemann, E., Braunger, J., Boehmelt, G., Madwed, JB., Young, ER., Marshall, DR., Pehamberger, H., Wirth, T., Kraut, N., Beug, H. (2010)

BI 5700, a Selective Chemical Inhibitor of IκB Kinase 2, Specifically Suppresses Epithelial-Mesenchymal Transition and Metastasis in Mouse Models of Tumor Progression.

Genes Cancer. 1(2):101-14
Rumpf, C., Cipak, L., Dudas, A., Benko, Z., Pozgajova, M., Riedel, CG., Ammerer, G., Mechtler, K., Gregan, J. (2010)

Casein kinase 1 is required for efficient removal of Rec8 during meiosis I.

Cell Cycle. 9(13):2657-62
Neumüller, KG., Elsayad, K., Reisecker, JM., Waxham, MN., Heinze, KG. (2010)

Photounbinding of calmodulin from a family of CaM binding peptides.

PLoS One. 5(11):e14050
Keays, DA., Cleak, J., Huang, GJ., Edwards, A., Braun, A., Treiber, CD., Pidsley, R., Flint, J. (2010)

The role of Tuba1a in adult hippocampal neurogenesis and the formation of the dentate gyrus.

Dev Neurosci. 32(4):268-77
Heinz, E., Pichler, P., Heinz, C., Op den Camp, HJ., Toenshoff, ER., Ammerer, G., Mechtler, K., Wagner, M., Horn, M. (2010)

Proteomic analysis of the outer membrane of Protochlamydia amoebophila elementary bodies.

Proteomics. 10(24):4363-76
Mach-Aigner, AR., Grosstessner-Hain, K., Poças-Fonseca, MJ., Mechtler, K., Mach, RL. (2010)

From an electrophoretic mobility shift assay to isolated transcription factors: a fast genomic-proteomic approach.

BMC Genomics. 11:644
Rumpf, C., Cipak, L., Schleiffer, A., Pidoux, A., Mechtler, K., Tolić-Nørrelykke, IM., Gregan, J. (2010)

Laser microsurgery provides evidence for merotelic kinetochore attachments in fission yeast cells lacking Pcs1 or Clr4.

Cell Cycle. 9(19):3997-4004
Baudrimont, A., Penkner, A., Woglar, A., Machacek, T., Wegrostek, C., Gloggnitzer, J., Fridkin, A., Klein, F., Gruenbaum, Y., Pasierbek, P., Jantsch, V. (2010)

Leptotene/zygotene chromosome movement via the SUN/KASH protein bridge in Caenorhabditis elegans.

PLoS Genet. 6(11):e1001219
Stasyk, T., Holzmann, J., Stumberger, S., Ebner, HL., Hess, MW., Bonn, GK., Mechtler, K., Huber, LA. (2010)

Proteomic analysis of endosomes from genetically modified p14/MP1 mouse embryonic fibroblasts.

Proteomics. 10(22):4117-27
Fuchs, A., Inthal, A., Herrmann, D., Cheng, S., Nakatomi, M., Peters, H., Neubüser, A. (2010)

Regulation of Tbx22 during facial and palatal development.

Dev Dyn. 239(11):2860-74
Cachero, S., Ostrovsky, AD., Yu, JY., Dickson, BJ., Jefferis, GS. (2010)

Sexual dimorphism in the fly brain.

Curr Biol. 20(18):1589-601
Yu, JY., Kanai, MI., Demir, E., Jefferis, GS., Dickson, BJ. (2010)

Cellular organization of the neural circuit that drives Drosophila courtship behavior.

Curr Biol. 20(18):1602-14
Resch, GP., Urban, E., Jacob, S. (2010)

The actin cytoskeleton in whole mount preparations and sections.

Methods Cell Biol. 96:529-64
Maschler, S., Gebeshuber, CA., Wiedemann, EM., Alacakaptan, M., Schreiber, M., Custic, I., Beug, H. (2010)

Annexin A1 attenuates EMT and metastatic potential in breast cancer.

EMBO Mol Med. 2(10):401-14
El-Kasaby, A., Just, H., Malle, E., Stolt-Bergner, PC., Sitte, HH., Freissmuth, M., Kudlacek, O. (2010)

Mutations in the carboxyl-terminal SEC24 binding motif of the serotonin transporter impair folding of the transporter.

J Biol Chem. 285(50):39201-10
Baumann, CL., Aspalter, IM., Sharif, O., Pichlmair, A., Blüml, S., Grebien, F., Bruckner, M., Pasierbek, P., Aumayr, K., Planyavsky, M., Bennett, KL., Colinge, J., Knapp, S., Superti-Furga, G. (2010)

CD14 is a coreceptor of Toll-like receptors 7 and 9.

J Exp Med. 207(12):2689-701
Braglia, P., Heindl, K., Schleiffer, A., Martinez, J., Proudfoot, NJ. (2010)

Role of the RNA/DNA kinase Grc3 in transcription termination by RNA polymerase I.

EMBO Rep. 11(10):758-64
Nishiyama, T., Ladurner, R., Schmitz, J., Kreidl, E., Schleiffer, A., Bhaskara, V., Bando, M., Shirahige, K., Hyman, AA., Mechtler, K., Peters, JM. (2010)

Sororin mediates sister chromatid cohesion by antagonizing Wapl.

Cell. 143(5):737-49
Tian, G., Jaglin, XH., Keays, DA., Francis, F., Chelly, J., Cowan, NJ. (2010)

Disease-associated mutations in TUBA1A result in a spectrum of defects in the tubulin folding and heterodimer assembly pathway.

Hum Mol Genet. 19(18):3599-613
Berg, DA., Kirkham, M., Beljajeva, A., Knapp, D., Habermann, B., Ryge, J., Tanaka, EM., Simon, A. (2010)

Efficient regeneration by activation of neurogenesis in homeostatically quiescent regions of the adult vertebrate brain.

Development. 137(24):4127-34
Fujimori, S., Novak, H., Weissenböck, M., Jussila, M., Gonçalves, A., Zeller, R., Galloway, J., Thesleff, I., Hartmann, C. (2010)

Wnt/β-catenin signaling in the dental mesenchyme regulates incisor development by regulating Bmp4.

Dev Biol. 348(1):97-106
Vikstrom, I., Carotta, S., Lüthje, K., Peperzak, V., Jost, PJ., Glaser, S., Busslinger, M., Bouillet, P., Strasser, A., Nutt, SL., Tarlinton, DM. (2010)

Mcl-1 is essential for germinal center formation and B cell memory.

Science. 330(6007):1095-9
Neely, GG., Hess, A., Costigan, M., Keene, AC., Goulas, S., Langeslag, M., Griffin, RS., Belfer, I., Dai, F., Smith, SB., Diatchenko, L., Gupta, V., Xia, CP., Amann, S., Kreitz, S., Heindl-Erdmann, C., Wolz, S., Ly, CV., Arora, S., Sarangi, R., Dan, D., Novatchkova, M., Rosenzweig, M., Gibson, DG., Truong, D., Schramek, D., Zoranovic, T., Cronin, SJ., Angjeli, B., Brune, K., Dietzl, G., Maixner, W., Meixner, A., Thomas, W., Pospisilik, JA., Alenius, M., Kress, M., Subramaniam, S., Garrity, PA., Bellen, HJ., Woolf, CJ., Penninger, JM. (2010)

A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene.

Cell. 143(4):628-38
Wang, Y., Souabni, A., Flavell, RA., Wan, YY. (2010)

An intrinsic mechanism predisposes Foxp3-expressing regulatory T cells to Th2 conversion in vivo.

J Immunol. 185(10):5983-92
Pichler, P., Köcher, T., Holzmann, J., Mazanek, M., Taus, T., Ammerer, G., Mechtler, K. (2010)

Peptide labeling with isobaric tags yields higher identification rates using iTRAQ 4-plex compared to TMT 6-plex and iTRAQ 8-plex on LTQ Orbitrap.

Anal Chem. 82(15):6549-58
Rovina, P., Jaritz, M., Bornancin, F. (2010)

Transcriptional repression of ceramide kinase in LPS-challenged macrophages.

Biochem Biophys Res Commun. 401(1):164-7
Lyashenko, N., Weissenböck, M., Sharir, A., Erben, RG., Minami, Y., Hartmann, C. (2010)

Mice lacking the orphan receptor ror1 have distinct skeletal abnormalities and are growth retarded.

Dev Dyn. 239(8):2266-77
Grausenburger, R., Bilic, I., Boucheron, N., Zupkovitz, G., El-Housseiny, L., Tschismarov, R., Zhang, Y., Rembold, M., Gaisberger, M., Hartl, A., Epstein, MM., Matthias, P., Seiser, C., Ellmeier, W. (2010)

Conditional deletion of histone deacetylase 1 in T cells leads to enhanced airway inflammation and increased Th2 cytokine production.

J Immunol. 185(6):3489-97
Wagner, S., Königsmaier, L., Lara-Tejero, M., Lefebre, M., Marlovits, TC., Galán, JE. (2010)

Organization and coordinated assembly of the type III secretion export apparatus.

Proc Natl Acad Sci U S A. 107(41):17745-50
Bouchard, M., de Caprona, D., Busslinger, M., Xu, P., Fritzsch, B. (2010)

Pax2 and Pax8 cooperate in mouse inner ear morphogenesis and innervation.

BMC Dev Biol. 10:89
Dickson, BJ., Zou, Y. (2010)

Navigating intermediate targets: the nervous system midline.

Cold Spring Harb Perspect Biol. 2(8):a002055
Lukaszewicz, A., Howard-Till, RA., Novatchkova, M., Mochizuki, K., Loidl, J. (2010)

MRE11 and COM1/SAE2 are required for double-strand break repair and efficient chromosome pairing during meiosis of the protist Tetrahymena.

Chromosoma. 119(5):505-18
Olivieri, D., Sykora, MM., Sachidanandam, R., Mechtler, K., Brennecke, J. (2010)

An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila.

EMBO J. 29(19):3301-17
Haider, S., Wagner, M., Schmid, MC., Sixt, BS., Christian, JG., Häcker, G., Pichler, P., Mechtler, K., Müller, A., Baranyi, C., Toenshoff, ER., Montanaro, J., Horn, M. (2010)

Raman microspectroscopy reveals long-term extracellular activity of Chlamydiae.

Mol Microbiol. 77(3):687-700
Schmitz, MH., Held, M., Janssens, V., Hutchins, JR., Hudecz, O., Ivanova, E., Goris, J., Trinkle-Mulcahy, L., Lamond, AI., Poser, I., Hyman, AA., Mechtler, K., Peters, JM., Gerlich, DW. (2010)

Live-cell imaging RNAi screen identifies PP2A-B55alpha and importin-beta1 as key mitotic exit regulators in human cells.

Nat Cell Biol. 12(9):886-93
Leeb, M., Wutz, A. (2010)

Mechanistic concepts in X inactivation underlying dosage compensation in mammals.

Heredity (Edinb). 105(1):64-70
Friedbichler, K., Kerenyi, MA., Kovacic, B., Li, G., Hoelbl, A., Yahiaoui, S., Sexl, V., Müllner, EW., Fajmann, S., Cerny-Reiterer, S., Valent, P., Beug, H., Gouilleux, F., Bunting, KD., Moriggl, R. (2010)

Stat5a serine 725 and 779 phosphorylation is a prerequisite for hematopoietic transformation.

Blood. 116(9):1548-58
Haubner, BJ., Neely, GG., Voelkl, JG., Damilano, F., Kuba, K., Imai, Y., Komnenovic, V., Mayr, A., Pachinger, O., Hirsch, E., Penninger, JM., Metzler, B. (2010)

PI3Kgamma protects from myocardial ischemia and reperfusion injury through a kinase-independent pathway.

PLoS One. 5(2):e9350
Pasini, D., Malatesta, M., Jung, HR., Walfridsson, J., Willer, A., Olsson, L., Skotte, J., Wutz, A., Porse, B., Jensen, ON., Helin, K. (2010)

Characterization of an antagonistic switch between histone H3 lysine 27 methylation and acetylation in the transcriptional regulation of Polycomb group target genes.

Nucleic Acids Res. 38(15):4958-69
Alpert, AJ., Petritis, K., Kangas, L., Smith, RD., Mechtler, K., Mitulović, G., Mohammed, S., Heck, AJ. (2010)

Peptide orientation affects selectivity in ion-exchange chromatography.

Anal Chem. 82(12):5253-9
Malin, S., McManus, S., Busslinger, M. (2010)

STAT5 in B cell development and leukemia.

Curr Opin Immunol. 22(2):168-76
Majewski, IJ., Ritchie, ME., Phipson, B., Corbin, J., Pakusch, M., Ebert, A., Busslinger, M., Koseki, H., Hu, Y., Smyth, GK., Alexander, WS., Hilton, DJ., Blewitt, ME. (2010)

Opposing roles of polycomb repressive complexes in hematopoietic stem and progenitor cells.

Blood. 116(5):731-9
Rumpf, C., Cipak, L., Novatchkova, M., Li, Z., Polakova, S., Dudas, A., Kovacikova, I., Miadokova, E., Ammerer, G., Gregan, J. (2010)

High-throughput knockout screen in Schizosaccharomyces pombe identifies a novel gene required for efficient homolog disjunction during meiosis I.

Cell Cycle. 9(9):1802-8
Sawa, J., Heuck, A., Ehrmann, M., Clausen, T. (2010)

Molecular transformers in the cell: lessons learned from the DegP protease-chaperone.

Curr Opin Struct Biol. 20(2):253-8
Marth, K., Novatchkova, M., Focke-Tejkl, M., Jenisch, S., Jäger, S., Kabelitz, D., Valenta, R. (2010)

Tracing antigen signatures in the human IgE repertoire.

Mol Immunol. 47(14):2323-9
Hnisz, D., Majer, O., Frohner, IE., Komnenovic, V., Kuchler, K. (2010)

The Set3/Hos2 histone deacetylase complex attenuates cAMP/PKA signaling to regulate morphogenesis and virulence of Candida albicans.

PLoS Pathog. 6(5):e1000889
Kuçi, S., Kuçi, Z., Kreyenberg, H., Deak, E., Pütsch, K., Huenecke, S., Amara, C., Koller, S., Rettinger, E., Grez, M., Koehl, U., Latifi-Pupovci, H., Henschler, R., Tonn, T., von Laer, D., Klingebiel, T., Bader, P. (2010)

CD271 antigen defines a subset of multipotent stromal cells with immunosuppressive and lymphohematopoietic engraftment-promoting properties.

Haematologica. 95(4):651-9
Morandell, S., Grosstessner-Hain, K., Roitinger, E., Hudecz, O., Lindhorst, T., Teis, D., Wrulich, OA., Mazanek, M., Taus, T., Ueberall, F., Mechtler, K., Huber, LA. (2010)

QIKS--Quantitative identification of kinase substrates.

Proteomics. 10(10):2015-25
Gin, E., Tanaka, EM., Brusch, L. (2010)

A model for cyst lumen expansion and size regulation via fluid secretion.

J Theor Biol. 264(3):1077-88
Sakaguchi, S., Hombauer, M., Bilic, I., Naoe, Y., Schebesta, A., Taniuchi, I., Ellmeier, W. (2010)

The zinc-finger protein MAZR is part of the transcription factor network that controls the CD4 versus CD8 lineage fate of double-positive thymocytes.

Nat Immunol. 11(5):442-8
Zheng, K., Xiol, J., Reuter, M., Eckardt, S., Leu, NA., McLaughlin, KJ., Stark, A., Sachidanandam, R., Pillai, RS., Wang, PJ. (2010)

Mouse MOV10L1 associates with Piwi proteins and is an essential component of the Piwi-interacting RNA (piRNA) pathway.

Proc Natl Acad Sci U S A. 107(26):11841-6
Karginov, FV., Cheloufi, S., Chong, MM., Stark, A., Smith, AD., Hannon, GJ. (2010)

Diverse endonucleolytic cleavage sites in the mammalian transcriptome depend upon microRNAs, Drosha, and additional nucleases.

Mol Cell. 38(6):781-8
Molatore, S., Kiermaier, E., Jung, CB., Lee, M., Pulz, E., Höfler, H., Atkinson, MJ., Pellegata, NS. (2010)

Characterization of a naturally-occurring p27 mutation predisposing to multiple endocrine tumors.

Mol Cancer. 9:116
Krojer, T., Sawa, J., Huber, R., Clausen, T. (2010)

HtrA proteases have a conserved activation mechanism that can be triggered by distinct molecular cues.

Nat Struct Mol Biol. 17(7):844-52
Maier, HJ., Schmidt-Strassburger, U., Huber, MA., Wiedemann, EM., Beug, H., Wirth, T. (2010)

NF-kappaB promotes epithelial-mesenchymal transition, migration and invasion of pancreatic carcinoma cells.

Cancer Lett. 295(2):214-28
Urban, E., Jacob, S., Nemethova, M., Resch, GP., Small, JV. (2010)

Electron tomography reveals unbranched networks of actin filaments in lamellipodia.

Nat Cell Biol. 12(5):429-35
Johnson, BA., Kahler, DJ., Baban, B., Chandler, PR., Kang, B., Shimoda, M., Koni, PA., Pihkala, J., Vilagos, B., Busslinger, M., Munn, DH., Mellor, AL. (2010)

B-lymphoid cells with attributes of dendritic cells regulate T cells via indoleamine 2,3-dioxygenase.

Proc Natl Acad Sci U S A. 107(23):10644-8
Lampert, F., Hornung, P., Westermann, S. (2010)

The Dam1 complex confers microtubule plus end-tracking activity to the Ndc80 kinetochore complex.

J Cell Biol. 189(4):641-9
Reimann, M., Lee, S., Loddenkemper, C., Dörr, JR., Tabor, V., Aichele, P., Stein, H., Dörken, B., Jenuwein, T., Schmitt, CA. (2010)

Tumor stroma-derived TGF-beta limits myc-driven lymphomagenesis via Suv39h1-dependent senescence.

Cancer Cell. 17(3):262-72
Siekhaus, D., Haesemeyer, M., Moffitt, O., Lehmann, R. (2010)

RhoL controls invasion and Rap1 localization during immune cell transmigration in Drosophila.

Nat Cell Biol. 12(6):605-10
Schraidt, O., Lefebre, MD., Brunner, MJ., Schmied, WH., Schmidt, A., Radics, J., Mechtler, K., Galán, JE., Marlovits, TC. (2010)

Topology and organization of the Salmonella typhimurium type III secretion needle complex components.

PLoS Pathog. 6(4):e1000824
Leitner, A., Sturm, M., Hudecz, O., Mazanek, M., Smått, JH., Lindén, M., Lindner, W., Mechtler, K. (2010)

Probing the phosphoproteome of HeLa cells using nanocast metal oxide microspheres for phosphopeptide enrichment.

Anal Chem. 82(7):2726-33
Braun, A., Breuss, M., Salzer, MC., Flint, J., Cowan, NJ., Keays, DA. (2010)

Tuba8 is expressed at low levels in the developing mouse and human brain.

Am J Hum Genet. 86(5):819-22; author reply 822-3
Agrelo, R., Wutz, A. (2010)

X inactivation and disease.

Semin Cell Dev Biol. 21(2):194-200
Eskeland, R., Leeb, M., Grimes, GR., Kress, C., Boyle, S., Sproul, D., Gilbert, N., Fan, Y., Skoultchi, AI., Wutz, A., Bickmore, WA. (2010)

Ring1B compacts chromatin structure and represses gene expression independent of histone ubiquitination.

Mol Cell. 38(3):452-64
Schenk, C., Bringmann, H., Hyman, AA., Cowan, CR. (2010)

Cortical domain correction repositions the polarity boundary to match the cytokinesis furrow in C. elegans embryos.

Development. 137(10):1743-53
Hoelbl, A., Schuster, C., Kovacic, B., Zhu, B., Wickre, M., Hoelzl, MA., Fajmann, S., Grebien, F., Warsch, W., Stengl, G., Hennighausen, L., Poli, V., Beug, H., Moriggl, R., Sexl, V. (2010)

Stat5 is indispensable for the maintenance of bcr/abl-positive leukaemia.

EMBO Mol Med. 2(3):98-110
Zeitlinger, J., Stark, A. (2010)

Developmental gene regulation in the era of genomics.

Dev Biol. 339(2):230-9
Neumann, B., Walter, T., Hériché, JK., Bulkescher, J., Erfle, H., Conrad, C., Rogers, P., Poser, I., Held, M., Liebel, U., Cetin, C., Sieckmann, F., Pau, G., Kabbe, R., Wünsche, A., Satagopam, V., Schmitz, MH., Chapuis, C., Gerlich, DW., Schneider, R., Eils, R., Huber, W., Peters, JM., Hyman, AA., Durbin, R., Pepperkok, R., Ellenberg, J. (2010)

Phenotypic profiling of the human genome by time-lapse microscopy reveals cell division genes.

Nature. 464(7289):721-7
Mazanek, M., Roitinger, E., Hudecz, O., Hutchins, JR., Hegemann, B., Mitulović, G., Taus, T., Stingl, C., Peters, JM., Mechtler, K. (2010)

A new acid mix enhances phosphopeptide enrichment on titanium- and zirconium dioxide for mapping of phosphorylation sites on protein complexes.

J Chromatogr B Analyt Technol Biomed Life Sci. 878(5-6):515-24
Hutchins, JR., Toyoda, Y., Hegemann, B., Poser, I., Hériché, JK., Sykora, MM., Augsburg, M., Hudecz, O., Buschhorn, BA., Bulkescher, J., Conrad, C., Comartin, D., Schleiffer, A., Sarov, M., Pozniakovsky, A., Slabicki, MM., Schloissnig, S., Steinmacher, I., Leuschner, M., Ssykor, A., Lawo, S., Pelletier, L., Stark, H., Nasmyth, K., Ellenberg, J., Durbin, R., Buchholz, F., Mechtler, K., Hyman, AA., Peters, JM. (2010)

Systematic analysis of human protein complexes identifies chromosome segregation proteins.

Science. 328(5978):593-9
Kim, YJ., Bartalska, K., Audsley, N., Yamanaka, N., Yapici, N., Lee, JY., Kim, YC., Markovic, M., Isaac, E., Tanaka, Y., Dickson, BJ. (2010)

MIPs are ancestral ligands for the sex peptide receptor.

Proc Natl Acad Sci U S A. 107(14):6520-5
Ishizaki, K., Suzuki, K., Mito, T., Tanaka, EM., Sato, S. (2010)

Morphologic, functional, and occlusal characterization of mandibular lateral displacement malocclusion.

Am J Orthod Dentofacial Orthop. 137(4):454.e1-9; discussion 454-5
Herrmann, D., Ferrer-Vaquer, A., Lahsnig, C., Firnberg, N., Leibbrandt, A., Neubüser, A. (2010)

Expression and regulation of ANTXR1 in the chick embryo.

Dev Dyn. 239(2):680-7
Radner, FP., Streith, IE., Schoiswohl, G., Schweiger, M., Kumari, M., Eichmann, TO., Rechberger, G., Koefeler, HC., Eder, S., Schauer, S., Theussl, HC., Preiss-Landl, K., Lass, A., Zimmermann, R., Hoefler, G., Zechner, R., Haemmerle, G. (2010)

Growth retardation, impaired triacylglycerol catabolism, hepatic steatosis, and lethal skin barrier defect in mice lacking comparative gene identification-58 (CGI-58).

J Biol Chem. 285(10):7300-11
Huang, J., Dorsey, J., Chuikov, S., Zhang, X., Jenuwein, T., Reinberg, D., Berger, SL. (2010)

G9a and Glp methylate lysine 373 in the tumor suppressor p53.

J Biol Chem. 285(13):9636-9641
Neely, GG., Kuba, K., Cammarato, A., Isobe, K., Amann, S., Zhang, L., Murata, M., Elmén, L., Gupta, V., Arora, S., Sarangi, R., Dan, D., Fujisawa, S., Usami, T., Xia, CP., Keene, AC., Alayari, NN., Yamakawa, H., Elling, U., Berger, C., Novatchkova, M., Koglgruber, R., Fukuda, K., Nishina, H., Isobe, M., Pospisilik, JA., Imai, Y., Pfeufer, A., Hicks, AA., Pramstaller, PP., Subramaniam, S., Kimura, A., Ocorr, K., Bodmer, R., Penninger, JM. (2010)

A global in vivo Drosophila RNAi screen identifies NOT3 as a conserved regulator of heart function.

Cell. 141(1):142-53
Reschke, M., Ferby, I., Stepniak, E., Seitzer, N., Horst, D., Wagner, EF., Ullrich, A. (2010)

Mitogen-inducible gene-6 is a negative regulator of epidermal growth factor receptor signaling in hepatocytes and human hepatocellular carcinoma.

Hepatology. 51(4):1383-90
Marlovits, TC., Stebbins, CE. (2010)

Type III secretion systems shape up as they ship out.

Curr Opin Microbiol. 13(1):47-52
Feng, W., Yonezawa, M., Ye, J., Jenuwein, T., Grummt, I. (2010)

PHF8 activates transcription of rRNA genes through H3K4me3 binding and H3K9me1/2 demethylation.

Nat Struct Mol Biol. 17(4):445-50
Hasenbein, S., Meltzer, M., Hauske, P., Kaiser, M., Huber, R., Clausen, T., Ehrmann, M. (2010)

Conversion of a regulatory into a degradative protease.

J Mol Biol. 397(4):957-66
Katis, VL., Lipp, JJ., Imre, R., Bogdanova, A., Okaz, E., Habermann, B., Mechtler, K., Nasmyth, K., Zachariae, W. (2010)

Rec8 phosphorylation by casein kinase 1 and Cdc7-Dbf4 kinase regulates cohesin cleavage by separase during meiosis.

Dev Cell. 18(3):397-409
Khan, AG., Pickl-Herk, A., Gajdzik, L., Marlovits, TC., Fuchs, R., Blaas, D. (2010)

Human rhinovirus 14 enters rhabdomyosarcoma cells expressing icam-1 by a clathrin-, caveolin-, and flotillin-independent pathway.

J Virol. 84(8):3984-92
Mujezinovic, N., Schneider, G., Wildpaner, M., Mechtler, K., Eisenhaber, F. (2010)

Reducing the haystack to find the needle: improved protein identification after fast elimination of non-interpretable peptide MS/MS spectra and noise reduction.

BMC Genomics. 11 Suppl 1:S13
Pullirsch, D., Härtel, R., Kishimoto, H., Leeb, M., Steiner, G., Wutz, A. (2010)

The Trithorax group protein Ash2l and Saf-A are recruited to the inactive X chromosome at the onset of stable X inactivation.

Development. 137(6):935-43
Owald, D., Fouquet, W., Schmidt, M., Wichmann, C., Mertel, S., Depner, H., Christiansen, F., Zube, C., Quentin, C., Körner, J., Urlaub, H., Mechtler, K., Sigrist, SJ. (2010)

A Syd-1 homologue regulates pre- and postsynaptic maturation in Drosophila.

J Cell Biol. 188(4):565-79
Galkin, VE., Schmied, WH., Schraidt, O., Marlovits, TC., Egelman, EH. (2010)

The structure of the Salmonella typhimurium type III secretion system needle shows divergence from the flagellar system.

J Mol Biol. 396(5):1392-7
Schnorrer, F., Schönbauer, C., Langer, CC., Dietzl, G., Novatchkova, M., Schernhuber, K., Fellner, M., Azaryan, A., Radolf, M., Stark, A., Keleman, K., Dickson, BJ. (2010)

Systematic genetic analysis of muscle morphogenesis and function in Drosophila.

Nature. 464(7286):287-91
Zulehner, G., Mikula, M., Schneller, D., van Zijl, F., Huber, H., Sieghart, W., Grasl-Kraupp, B., Waldhör, T., Peck-Radosavljevic, M., Beug, H., Mikulits, W. (2010)

Nuclear beta-catenin induces an early liver progenitor phenotype in hepatocellular carcinoma and promotes tumor recurrence.

Am J Pathol. 176(1):472-81
Agrelo, R., Wutz, A. (2010)

ConteXt of change--X inactivation and disease.

EMBO Mol Med. 2(1):6-15
Leeb, M., Pasini, D., Novatchkova, M., Jaritz, M., Helin, K., Wutz, A. (2010)

Polycomb complexes act redundantly to repress genomic repeats and genes.

Genes Dev. 24(3):265-76
Pospisilik, JA., Schramek, D., Schnidar, H., Cronin, SJ., Nehme, NT., Zhang, X., Knauf, C., Cani, PD., Aumayr, K., Todoric, J., Bayer, M., Haschemi, A., Puviindran, V., Tar, K., Orthofer, M., Neely, GG., Dietzl, G., Manoukian, A., Funovics, M., Prager, G., Wagner, O., Ferrandon, D., Aberger, F., Hui, CC., Esterbauer, H., Penninger, JM. (2010)

Drosophila genome-wide obesity screen reveals hedgehog as a determinant of brown versus white adipose cell fate.

Cell. 140(1):148-60
Malin, S., McManus, S., Cobaleda, C., Novatchkova, M., Delogu, A., Bouillet, P., Strasser, A., Busslinger, M. (2010)

Role of STAT5 in controlling cell survival and immunoglobulin gene recombination during pro-B cell development.

Nat Immunol. 11(2):171-9
Murchison, EP., Tovar, C., Hsu, A., Bender, HS., Kheradpour, P., Rebbeck, CA., Obendorf, D., Conlan, C., Bahlo, M., Blizzard, CA., Pyecroft, S., Kreiss, A., Kellis, M., Stark, A., Harkins, TT., Marshall Graves, JA., Woods, GM., Hannon, GJ., Papenfuss, AT. (2010)

The Tasmanian devil transcriptome reveals Schwann cell origins of a clonally transmissible cancer.

Science. 327(5961):84-7
Stasyk, T., Holzmann, J., Stumberger, S., Ebner, HL., Hess, MW., Bonn, GK., Mechtler, K., Huber, LA. (2010)

Proteomic analysis of endosomes from genetically modified p14/MP1 mouse embryonic fibroblasts.

Proteomics.
Maier HJ., Wirth T., Beug H. (2010)

Epithelial-Mesenchymal Transition in Pancreatic Carcinoma

Cancers. 2(4):2058-2083
Elsayad, K., Urich, A., Unterrainer, K., Heinze, KG. (2010)

Fast near-field imaging of spectrally broad sources using layered metallic structures

Proc. SPIE. 7757:77573M
Jaglin, XH., Poirier, K., Saillour, Y., Buhler, E., Tian, G., Bahi-Buisson, N., Fallet-Bianco, C., Phan-Dinh-Tuy, F., Kong, XP., Bomont, P., Castelnau-Ptakhine, L., Odent, S., Loget, P., Kossorotoff, M., Snoeck, I., Plessis, G., Parent, P., Beldjord, C., Cardoso, C., Represa, A., Flint, J., Keays, DA., Cowan, NJ., Chelly, J. (2009)

Mutations in the beta-tubulin gene TUBB2B result in asymmetrical polymicrogyria.

Nat Genet. 41(6):746-52
Do, JT., Han, DW., Gentile, L., Sobek-Klocke, I., Wutz, A., Schöler, HR. (2009)

Reprogramming of Xist against the pluripotent state in fusion hybrids.

J Cell Sci. 122(Pt 22):4122-9
Voss, SR., Epperlein, HH., Tanaka, EM. (2009)

Ambystoma mexicanum, the axolotl: a versatile amphibian model for regeneration, development, and evolution studies.

Cold Spring Harb Protoc. 2009(8):pdb.emo128
Khattak, S., Tanaka, EM. (2009)

Axolotl (Ambystoma mexicanum) in vitro fertilization.

Cold Spring Harb Protoc. 2009(8):pdb.prot5263
Khattak, S., Richter, T., Tanaka, EM. (2009)

Generation of transgenic axolotls (Ambystoma mexicanum).

Cold Spring Harb Protoc. 2009(8):pdb.prot5264
Nacu, E., Knapp, D., Tanaka, EM., Epperlein, HH. (2009)

Axolotl (Ambystoma mexicanum) embryonic transplantation methods.

Cold Spring Harb Protoc. 2009(8):pdb.prot5265
Kragl, M., Tanaka, EM. (2009)

Grafting axolotl (Ambystoma mexicanum) limb skin and cartilage from GFP+ donors to normal hosts.

Cold Spring Harb Protoc. 2009(8):pdb.prot5266
Kragl, M., Tanaka, EM. (2009)

Axolotl (Ambystoma mexicanum) limb and tail amputation.

Cold Spring Harb Protoc. 2009(8):pdb.prot5267
Stark, A. (2009)

Learning the transcriptional regulatory code.

Mol Syst Biol. 5:329
Nativio, R., Wendt, KS., Ito, Y., Huddleston, JE., Uribe-Lewis, S., Woodfine, K., Krueger, C., Reik, W., Peters, JM., Murrell, A. (2009)

Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus.

PLoS Genet. 5(11):e1000739
Agrelo, R., Wutz, A. (2009)

Cancer progenitors and epigenetic contexts: an Xisting connection.

Epigenetics. 4(8):568-70
Elsayad, K., Heinze, KG. (2009)

Defining a superlens operating regime for imaging fluorescent molecules.

PLoS One. 4(12):e7963
Baumgartner, C., Cerny-Reiterer, S., Sonneck, K., Mayerhofer, M., Gleixner, KV., Fritz, R., Kerenyi, M., Boudot, C., Gouilleux, F., Kornfeld, JW., Sillaber, C., Moriggl, R., Valent, P. (2009)

Expression of activated STAT5 in neoplastic mast cells in systemic mastocytosis: subcellular distribution and role of the transforming oncoprotein KIT D816V.

Am J Pathol. 175(6):2416-29
Schmidt, U., Abramova, A., Boucheron, N., Eckelhart, E., Schebesta, A., Bilic, I., Kneidinger, M., Unger, B., Hammer, M., Sibilia, M., Valent, P., Ellmeier, W. (2009)

The protein tyrosine kinase Tec regulates mast cell function.

Eur J Immunol. 39(11):3228-38
Holzmann, J., Pichler, P., Madalinski, M., Kurzbauer, R., Mechtler, K. (2009)

Stoichiometry determination of the MP1-p14 complex using a novel and cost-efficient method to produce an equimolar mixture of standard peptides.

Anal Chem. 81(24):10254-61
Cipak, L., Spirek, M., Novatchkova, M., Chen, Z., Rumpf, C., Lugmayr, W., Mechtler, K., Ammerer, G., Csaszar, E., Gregan, J. (2009)

An improved strategy for tandem affinity purification-tagging of Schizosaccharomyces pombe genes.

Proteomics. 9(20):4825-8
Schonthaler, HB., Huggenberger, R., Wculek, SK., Detmar, M., Wagner, EF. (2009)

Systemic anti-VEGF treatment strongly reduces skin inflammation in a mouse model of psoriasis.

Proc Natl Acad Sci U S A. 106(50):21264-9
Meireles-Filho, AC., Stark, A. (2009)

Comparative genomics of gene regulation-conservation and divergence of cis-regulatory information.

Curr Opin Genet Dev. 19(6):565-70
Müller, KP., Erdel, F., Caudron-Herger, M., Marth, C., Fodor, BD., Richter, M., Scaranaro, M., Beaudouin, J., Wachsmuth, M., Rippe, K. (2009)

Multiscale analysis of dynamics and interactions of heterochromatin protein 1 by fluorescence fluctuation microscopy.

Biophys J. 97(11):2876-85
Leeb, M., Steffen, PA., Wutz, A. (2009)

X chromosome inactivation sparked by non-coding RNAs.

RNA Biol. 6(2):94-9
Köcher, T., Pichler, P., Schutzbier, M., Stingl, C., Kaul, A., Teucher, N., Hasenfuss, G., Penninger, JM., Mechtler, K. (2009)

High precision quantitative proteomics using iTRAQ on an LTQ Orbitrap: a new mass spectrometric method combining the benefits of all.

J Proteome Res. 8(10):4743-52
Shoji, M., Tanaka, T., Hosokawa, M., Reuter, M., Stark, A., Kato, Y., Kondoh, G., Okawa, K., Chujo, T., Suzuki, T., Hata, K., Martin, SL., Noce, T., Kuramochi-Miyagawa, S., Nakano, T., Sasaki, H., Pillai, RS., Nakatsuji, N., Chuma, S. (2009)

The TDRD9-MIWI2 complex is essential for piRNA-mediated retrotransposon silencing in the mouse male germline.

Dev Cell. 17(6):775-87
Meltzer, M., Hasenbein, S., Mamant, N., Merdanovic, M., Poepsel, S., Hauske, P., Kaiser, M., Huber, R., Krojer, T., Clausen, T., Ehrmann, M. (2009)

Structure, function and regulation of the conserved serine proteases DegP and DegS of Escherichia coli.

Res Microbiol. 160(9):660-6
Bruckner, S., Soltészová, V., Gröller, ME., Hladůvka, J., Bühler, K., Yu, JY., Dickson, BJ. (2009)

BrainGazer--visual queries for neurobiology research.

IEEE Trans Vis Comput Graph. 15(6):1497-504
Surmann-Schmitt, C., Widmann, N., Dietz, U., Saeger, B., Eitzinger, N., Nakamura, Y., Rattel, M., Latham, R., Hartmann, C., von der Mark, H., Schett, G., von der Mark, K., Stock, M. (2009)

Wif-1 is expressed at cartilage-mesenchyme interfaces and impedes Wnt3a-mediated inhibition of chondrogenesis.

J Cell Sci. 122(Pt 20):3627-37
Hanada, R., Leibbrandt, A., Hanada, T., Kitaoka, S., Furuyashiki, T., Fujihara, H., Trichereau, J., Paolino, M., Qadri, F., Plehm, R., Klaere, S., Komnenovic, V., Mimata, H., Yoshimatsu, H., Takahashi, N., von Haeseler, A., Bader, M., Kilic, SS., Ueta, Y., Pifl, C., Narumiya, S., Penninger, JM. (2009)

Central control of fever and female body temperature by RANKL/RANK.

Nature. 462(7272):505-9
Hartmann, C. (2009)

Transcriptional networks controlling skeletal development.

Curr Opin Genet Dev. 19(5):437-43
Hauske, P., Mamant, N., Hasenbein, S., Nickel, S., Ottmann, C., Clausen, T., Ehrmann, M., Kaiser, M. (2009)

Peptidic small molecule activators of the stress sensor DegS.

Mol Biosyst. 5(9):980-5
Penkner, AM., Fridkin, A., Gloggnitzer, J., Baudrimont, A., Machacek, T., Woglar, A., Csaszar, E., Pasierbek, P., Ammerer, G., Gruenbaum, Y., Jantsch, V. (2009)

Meiotic chromosome homology search involves modifications of the nuclear envelope protein Matefin/SUN-1.

Cell. 139(5):920-33
van Zijl, F., Mair, M., Csiszar, A., Schneller, D., Zulehner, G., Huber, H., Eferl, R., Beug, H., Dolznig, H., Mikulits, W. (2009)

Hepatic tumor-stroma crosstalk guides epithelial to mesenchymal transition at the tumor edge.

Oncogene. 28(45):4022-33
Hutchins, JR., Moore, WJ., Clarke, PR. (2009)

Dynamic localisation of Ran GTPase during the cell cycle.

BMC Cell Biol. 10:66
Guinea-Viniegra, J., Zenz, R., Scheuch, H., Hnisz, D., Holcmann, M., Bakiri, L., Schonthaler, HB., Sibilia, M., Wagner, EF. (2009)

TNFalpha shedding and epidermal inflammation are controlled by Jun proteins.

Genes Dev. 23(22):2663-74
Brunner, MJ., Resch, GP. (2009)

Automated monitoring to reduce electron microscope downtime.

Ultramicroscopy. 109(11):1389-92
Eisenberg, T., Knauer, H., Schauer, A., Büttner, S., Ruckenstuhl, C., Carmona-Gutierrez, D., Ring, J., Schroeder, S., Magnes, C., Antonacci, L., Fussi, H., Deszcz, L., Hartl, R., Schraml, E., Criollo, A., Megalou, E., Weiskopf, D., Laun, P., Heeren, G., Breitenbach, M., Grubeck-Loebenstein, B., Herker, E., Fahrenkrog, B., Fröhlich, KU., Sinner, F., Tavernarakis, N., Minois, N., Kroemer, G., Madeo, F. (2009)

Induction of autophagy by spermidine promotes longevity.

Nat Cell Biol. 11(11):1305-14
Schoft, VK., Chumak, N., Mosiolek, M., Slusarz, L., Komnenovic, V., Brownfield, L., Twell, D., Kakutani, T., Tamaru, H. (2009)

Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin.

EMBO Rep. 10(9):1015-21
Sasaguri, K., Ishizaki-Takeuchi, R., Kuramae, S., Tanaka, EM., Sakurai, T., Sato, S. (2009)

The temporomandibular joint in a rheumatoid arthritis patient after orthodontic treatment.

Angle Orthod. 79(4):804-11
Kudo, NR., Anger, M., Peters, AH., Stemmann, O., Theussl, HC., Helmhart, W., Kudo, H., Heyting, C., Nasmyth, K. (2009)

Role of cleavage by separase of the Rec8 kleisin subunit of cohesin during mammalian meiosis I.

J Cell Sci. 122(Pt 15):2686-98
Wutz, A. (2009)

Oct4 to count 2.

Cell Res. 19(8):917-9
Mitulović, G., Stingl, C., Steinmacher, I., Hudecz, O., Hutchins, JR., Peters, JM., Mechtler, K. (2009)

Preventing carryover of peptides and proteins in nano LC-MS separations.

Anal Chem. 81(14):5955-60
Tanaka, EM., Ferretti, P. (2009)

Considering the evolution of regeneration in the central nervous system.

Nat Rev Neurosci. 10(10):713-23
Breithaupt, C., Kurzbauer, R., Schaller, F., Stintzi, A., Schaller, A., Huber, R., Macheroux, P., Clausen, T. (2009)

Structural basis of substrate specificity of plant 12-oxophytodienoate reductases.

J Mol Biol. 392(5):1266-77
Kiermaier, E., Woehrer, S., Peng, Y., Mechtler, K., Westermann, S. (2009)

A Dam1-based artificial kinetochore is sufficient to promote chromosome segregation in budding yeast.

Nat Cell Biol. 11(9):1109-15
Ooi, HS., Kwo, CY., Wildpaner, M., Sirota, FL., Eisenhaber, B., Maurer-Stroh, S., Wong, WC., Schleiffer, A., Eisenhaber, F., Schneider, G. (2009)

ANNIE: integrated de novo protein sequence annotation.

Nucleic Acids Res. 37(Web Server issue):W435-40
d'Erfurth, I., Jolivet, S., Froger, N., Catrice, O., Novatchkova, M., Mercier, R. (2009)

Turning meiosis into mitosis.

PLoS Biol. 7(6):e1000124
Zimniak, T., Stengl, K., Mechtler, K., Westermann, S. (2009)

Phosphoregulation of the budding yeast EB1 homologue Bim1p by Aurora/Ipl1p.

J Cell Biol. 186(3):379-91
Lawo, S., Bashkurov, M., Mullin, M., Ferreria, MG., Kittler, R., Habermann, B., Tagliaferro, A., Poser, I., Hutchins, JR., Hegemann, B., Pinchev, D., Buchholz, F., Peters, JM., Hyman, AA., Gingras, AC., Pelletier, L. (2009)

HAUS, the 8-subunit human Augmin complex, regulates centrosome and spindle integrity.

Curr Biol. 19(10):816-26
Wendt, KS., Peters, JM. (2009)

How cohesin and CTCF cooperate in regulating gene expression.

Chromosome Res. 17(2):201-14
Palfreyman, MT. (2009)

With Happyhour, everyone's under the table.

Cell. 137(5):802-4
Peters, JM., Bhaskara, V. (2009)

Cohesin acetylation: from antiestablishment to establishment.

Mol Cell. 34(1):1-2
Heinze, KG., Costantino, S., De Koninck, P., Wiseman, PW. (2009)

Beyond photobleaching, laser illumination unbinds fluorescent proteins.

J Phys Chem B. 113(15):5225-33
McGuinness, BE., Anger, M., Kouznetsova, A., Gil-Bernabé, AM., Helmhart, W., Kudo, NR., Wuensche, A., Taylor, S., Hoog, C., Novak, B., Nasmyth, K. (2009)

Regulation of APC/C activity in oocytes by a Bub1-dependent spindle assembly checkpoint.

Curr Biol. 19(5):369-80
Fuhrmann, J., Schmidt, A., Spiess, S., Lehner, A., Turgay, K., Mechtler, K., Charpentier, E., Clausen, T. (2009)

McsB is a protein arginine kinase that phosphorylates and inhibits the heat-shock regulator CtsR.

Science. 324(5932):1323-7
Hauske, P., Meltzer, M., Ottmann, C., Krojer, T., Clausen, T., Ehrmann, M., Kaiser, M. (2009)

Selectivity profiling of DegP substrates and inhibitors.

Bioorg Med Chem. 17(7):2920-4
Mummery-Widmer, JL., Yamazaki, M., Stoeger, T., Novatchkova, M., Bhalerao, S., Chen, D., Dietzl, G., Dickson, BJ., Knoblich, JA. (2009)

Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi.

Nature. 458(7241):987-92
Müller, MQ., de Koning, LJ., Schmidt, A., Ihling, C., Syha, Y., Rau, O., Mechtler, K., Schubert-Zsilavecz, M., Sinz, A. (2009)

An innovative method to study target protein-drug interactions by mass spectrometry.

J Med Chem. 52(9):2875-9
Brehme, M., Hantschel, O., Colinge, J., Kaupe, I., Planyavsky, M., Köcher, T., Mechtler, K., Bennett, KL., Superti-Furga, G. (2009)

Charting the molecular network of the drug target Bcr-Abl.

Proc Natl Acad Sci U S A. 106(18):7414-9
Hewitt, SL., Yin, B., Ji, Y., Chaumeil, J., Marszalek, K., Tenthorey, J., Salvagiotto, G., Steinel, N., Ramsey, LB., Ghysdael, J., Farrar, MA., Sleckman, BP., Schatz, DG., Busslinger, M., Bassing, CH., Skok, JA. (2009)

RAG-1 and ATM coordinate monoallelic recombination and nuclear positioning of immunoglobulin loci.

Nat Immunol. 10(6):655-64
Trojer, P., Zhang, J., Yonezawa, M., Schmidt, A., Zheng, H., Jenuwein, T., Reinberg, D. (2009)

Dynamic Histone H1 Isotype 4 Methylation and Demethylation by Histone Lysine Methyltransferase G9a/KMT1C and the Jumonji Domain-containing JMJD2/KDM4 Proteins.

J Biol Chem. 284(13):8395-405
Agrelo, R., Souabni, A., Novatchkova, M., Haslinger, C., Leeb, M., Komnenovic, V., Kishimoto, H., Gresh, L., Kohwi-Shigematsu, T., Kenner, L., Wutz, A. (2009)

SATB1 defines the developmental context for gene silencing by Xist in lymphoma and embryonic cells.

Dev Cell. 16(4):507-16
Decker, T., Pasca di Magliano, M., McManus, S., Sun, Q., Bonifer, C., Tagoh, H., Busslinger, M. (2009)

Stepwise activation of enhancer and promoter regions of the B cell commitment gene Pax5 in early lymphopoiesis.

Immunity. 30(4):508-20
Stockinger, S., Kastner, R., Kernbauer, E., Pilz, A., Westermayer, S., Reutterer, B., Soulat, D., Stengl, G., Vogl, C., Frenz, T., Waibler, Z., Taniguchi, T., Rülicke, T., Kalinke, U., Müller, M., Decker, T. (2009)

Characterization of the interferon-producing cell in mice infected with Listeria monocytogenes.

PLoS Pathog. 5(3):e1000355
Leitner, A., Sturm, M., Smått, JH., Järn, M., Lindén, M., Mechtler, K., Lindner, W. (2009)

Optimizing the performance of tin dioxide microspheres for phosphopeptide enrichment.

Anal Chim Acta. 638(1):51-7
Fritz, J., Strehblow, A., Taschner, A., Schopoff, S., Pasierbek, P., Jantsch, MF. (2009)

RNA-regulated interaction of transportin-1 and exportin-5 with the double-stranded RNA-binding domain regulates nucleocytoplasmic shuttling of ADAR1.

Mol Cell Biol. 29(6):1487-97
Rowland, BD., Roig, MB., Nishino, T., Kurze, A., Uluocak, P., Mishra, A., Beckouët, F., Underwood, P., Metson, J., Imre, R., Mechtler, K., Katis, VL., Nasmyth, K. (2009)

Building sister chromatid cohesion: smc3 acetylation counteracts an antiestablishment activity.

Mol Cell. 33(6):763-74
Ecker, A., Simma, O., Hoelbl, A., Kenner, L., Beug, H., Moriggl, R., Sexl, V. (2009)

The dark and the bright side of Stat3: proto-oncogene and tumor-suppressor.

Front Biosci (Landmark Ed). 14:2944-58
Pauler, FM., Sloane, MA., Huang, R., Regha, K., Koerner, MV., Tamir, I., Sommer, A., Aszodi, A., Jenuwein, T., Barlow, DP. (2009)

H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome.

Genome Res. 19(2):221-33
Herzog, F., Primorac, I., Dube, P., Lenart, P., Sander, B., Mechtler, K., Stark, H., Peters, JM. (2009)

Structure of the anaphase-promoting complex/cyclosome interacting with a mitotic checkpoint complex.

Science. 323(5920):1477-81
Häsemeyer, M., Yapici, N., Heberlein, U., Dickson, BJ. (2009)

Sensory neurons in the Drosophila genital tract regulate female reproductive behavior.

Neuron. 61(4):511-8
Chen, D., Berger, J., Fellner, M., Suzuki, T. (2009)

FLYSNPdb: a high-density SNP database of Drosophila melanogaster.

Nucleic Acids Res. 37(Database issue):D567-70
Lahsnig, C., Mikula, M., Petz, M., Zulehner, G., Schneller, D., van Zijl, F., Huber, H., Csiszar, A., Beug, H., Mikulits, W. (2009)

ILEI requires oncogenic Ras for the epithelial to mesenchymal transition of hepatocytes and liver carcinoma progression.

Oncogene. 28(5):638-50
Mietton, F., Sengupta, AK., Molla, A., Picchi, G., Barral, S., Heliot, L., Grange, T., Wutz, A., Dimitrov, S. (2009)

Weak but uniform enrichment of the histone variant macroH2A1 along the inactive X chromosome.

Mol Cell Biol. 29(1):150-6
Cerqueira, FR., Morandell, S., Ascher, S., Mechtler, K., Huber, LA., Pfeifer, B., Graber, A., Tilg, B., Baumgartner, C. (2009)

Improving Phosphopeptide/Protein Identification Using a New Data Mining Framework for MS/MS Spectra Preprocessing

J Proteomics Bioinform. 2:150-164
Kragl, M., Knapp, D., Nacu, E., Khattak, S., Schnapp, E., Epperlein, HH., Tanaka, EM. (2008)

Novel insights into the flexibility of cell and positional identity during urodele limb regeneration.

Cold Spring Harb Symp Quant Biol. 73:583-92
Peters, JM., Tedeschi, A., Schmitz, J. (2008)

The cohesin complex and its roles in chromosome biology.

Genes Dev. 22(22):3089-114
Greeson, NT., Sengupta, R., Arida, AR., Jenuwein, T., Sanders, SL. (2008)

Di-methyl H4 lysine 20 targets the checkpoint protein Crb2 to sites of DNA damage.

J Biol Chem. 283(48):33168-74
Grote, D., Boualia, SK., Souabni, A., Merkel, C., Chi, X., Costantini, F., Carroll, T., Bouchard, M. (2008)

Gata3 acts downstream of beta-catenin signaling to prevent ectopic metanephric kidney induction.

PLoS Genet. 4(12):e1000316
d'Erfurth, I., Jolivet, S., Froger, N., Catrice, O., Novatchkova, M., Simon, M., Jenczewski, E., Mercier, R. (2008)

Mutations in AtPS1 (Arabidopsis thaliana parallel spindle 1) lead to the production of diploid pollen grains.

PLoS Genet. 4(11):e1000274
Schnorrer, F., Ahlford, A., Chen, D., Milani, L., Syvänen, AC. (2008)

Positional cloning by fast-track SNP-mapping in Drosophila melanogaster.

Nat Protoc. 3(11):1751-65
Hui, L., Zatloukal, K., Scheuch, H., Stepniak, E., Wagner, EF. (2008)

Proliferation of human HCC cells and chemically induced mouse liver cancers requires JNK1-dependent p21 downregulation.

J Clin Invest. 118(12):3943-53
Yotova, IY., Vlatkovic, IM., Pauler, FM., Warczok, KE., Ambros, PF., Oshimura, M., Theussl, HC., Gessler, M., Wagner, EF., Barlow, DP. (2008)

Identification of the human homolog of the imprinted mouse Air non-coding RNA.

Genomics. 92(6):464-73
Mochizuki, K., Novatchkova, M., Loidl, J. (2008)

DNA double-strand breaks, but not crossovers, are required for the reorganization of meiotic nuclei in Tetrahymena.

J Cell Sci. 121(Pt 13):2148-58
Riehs, N., Akimcheva, S., Puizina, J., Bulankova, P., Idol, RA., Siroky, J., Schleiffer, A., Schweizer, D., Shippen, DE., Riha, K. (2008)

Arabidopsis SMG7 protein is required for exit from meiosis.

J Cell Sci. 121(Pt 13):2208-16
Gurzov, EN., Ortis, F., Bakiri, L., Wagner, EF., Eizirik, DL. (2008)

JunB Inhibits ER Stress and Apoptosis in Pancreatic Beta Cells.

PLoS One. 3(8):e3030
Breitsprecher, D., Kiesewetter, AK., Linkner, J., Urbanke, C., Resch, GP., Small, JV., Faix, J. (2008)

Clustering of VASP actively drives processive, WH2 domain-mediated actin filament elongation.

EMBO J. 27(22):2943-54
Gerlitz, O., Wagner, EF., Moreno, E. (2008)

When flies and mice develop cancer. Meeting on development and cancer.

EMBO Rep. 9(8):730-4
Naetar, N., Korbei, B., Kozlov, S., Kerenyi, MA., Dorner, D., Kral, R., Gotic, I., Fuchs, P., Cohen, TV., Bittner, R., Stewart, CL., Foisner, R. (2008)

Loss of nucleoplasmic LAP2alpha-lamin A complexes causes erythroid and epidermal progenitor hyperproliferation.

Nat Cell Biol. 10(11):1341-8
Ferrer-Vaquer, A., Maurey, P., Werzowa, J., Firnberg, N., Leibbrandt, A., Neubüser, A. (2008)

Expression and regulation of HTRA1 during chick and early mouse development.

Dev Dyn. 237(7):1893-900
Shibata, S., Wutz, A. (2008)

Transcript versus transcription?

Epigenetics. 3(5):246-9
Dickson, BJ. (2008)

Wired for sex: the neurobiology of Drosophila mating decisions.

Science. 322(5903):904-9
Pannetier, M., Julien, E., Schotta, G., Tardat, M., Sardet, C., Jenuwein, T., Feil, R. (2008)

PR-SET7 and SUV4-20H regulate H4 lysine-20 methylation at imprinting control regions in the mouse.

EMBO Rep. 9(10):998-1005
Lynch, SL., Boon, AJ., Smith, J., Harper, CM., Tanaka, EM. (2008)

Complications of needle electromyography: hematoma risk and correlation with anticoagulation and antiplatelet therapy.

Muscle Nerve. 38(4):1225-30
Grishchuk, EL., Efremov, AK., Volkov, VA., Spiridonov, IS., Gudimchuk, N., Westermann, S., Drubin, D., Barnes, G., McIntosh, JR., Ataullakhanov, FI. (2008)

The Dam1 ring binds microtubules strongly enough to be a processive as well as energy-efficient coupler for chromosome motion.

Proc Natl Acad Sci U S A. 105(40):15423-8
Tanaka, EM., Sato, S. (2008)

Longitudinal alteration of the occlusal plane and development of different dentoskeletal frames during growth.

Am J Orthod Dentofacial Orthop. 134(5):602.e1-11; discussion 602-3
Jiao, X., Katiyar, S., Liu, M., Mueller, SC., Lisanti, MP., Li, A., Pestell, TG., Wu, K., Ju, X., Li, Z., Wagner, EF., Takeya, T., Wang, C., Pestell, RG. (2008)

Disruption of c-Jun reduces cellular migration and invasion through inhibition of c-Src and hyperactivation of ROCK II kinase.

Mol Biol Cell. 19(4):1378-90
Small, JV., Auinger, S., Nemethova, M., Koestler, S., Goldie, KN., Hoenger, A., Resch, GP. (2008)

Unravelling the structure of the lamellipodium.

J Microsc. 231(3):479-85
Wang, HW., Long, S., Ciferri, C., Westermann, S., Drubin, D., Barnes, G., Nogales, E. (2008)

Architecture and flexibility of the yeast Ndc80 kinetochore complex.

J Mol Biol. 383(4):894-903
Kerenyi, MA., Grebien, F., Gehart, H., Schifrer, M., Artaker, M., Kovacic, B., Beug, H., Moriggl, R., Müllner, EW. (2008)

Stat5 regulates cellular iron uptake of erythroid cells via IRP-2 and TfR-1.

Blood. 112(9):3878-88
Barkus, RV., Klyachko, O., Horiuchi, D., Dickson, BJ., Saxton, WM. (2008)

Identification of an axonal kinesin-3 motor for fast anterograde vesicle transport that facilitates retrograde transport of neuropeptides.

Mol Biol Cell. 19(1):274-83
Macaisne, N., Novatchkova, M., Peirera, L., Vezon, D., Jolivet, S., Froger, N., Chelysheva, L., Grelon, M., Mercier, R. (2008)

SHOC1, an XPF endonuclease-related protein, is essential for the formation of class I meiotic crossovers.

Curr Biol. 18(18):1432-7
Hasselblatt, P., Gresh, L., Kudo, H., Guinea-Viniegra, J., Wagner, EF. (2008)

The role of the transcription factor AP-1 in colitis-associated and beta-catenin-dependent intestinal tumorigenesis in mice.

Oncogene. 27(47):6102-9
Nedjic, J., Aichinger, M., Emmerich, J., Mizushima, N., Klein, L. (2008)

Autophagy in thymic epithelium shapes the T-cell repertoire and is essential for tolerance.

Nature. 455(7211):396-400
Grech, G., Blázquez-Domingo, M., Kolbus, A., Bakker, WJ., Müllner, EW., Beug, H., von Lindern, M. (2008)

Igbp1 is part of a positive feedback loop in stem cell factor-dependent, selective mRNA translation initiation inhibiting erythroid differentiation.

Blood. 112(7):2750-60
Schähs, P., Weidinger, P., Probst, OC., Svoboda, B., Stadlmann, J., Beug, H., Waerner, T., Mach, L. (2008)

Cellular repressor of E1A-stimulated genes is a bona fide lysosomal protein which undergoes proteolytic maturation during its biosynthesis.

Exp Cell Res. 314(16):3036-47
Kornfeld, JW., Grebien, F., Kerenyi, MA., Friedbichler, K., Kovacic, B., Zankl, B., Hoelbl, A., Nivarti, H., Beug, H., Sexl, V., Muller, M., Kenner, L., Mullner, EW., Gouilleux, F., Moriggl, R. (2008)

The different functions of Stat5 and chromatin alteration through Stat5 proteins.

Front Biosci. 13:6237-54
Bachir, AI., Kolin, DL., Heinze, KG., Hebert, B., Wiseman, PW. (2008)

A guide to accurate measurement of diffusion using fluorescence correlation techniques with blinking quantum dot nanoparticle labels.

J Chem Phys. 128(22):225105
Durchdewald, M., Guinea-Viniegra, J., Haag, D., Riehl, A., Lichter, P., Hahn, M., Wagner, EF., Angel, P., Hess, J. (2008)

Podoplanin is a novel fos target gene in skin carcinogenesis.

Cancer Res. 68(17):6877-83
Ruiz-Bonilla, V., Perdiguero, E., Gresh, L., Serrano, AL., Zamora, M., Sousa-Victor, P., Jardí, M., Wagner, EF., Muñoz-Cánoves, P. (2008)

Efficient adult skeletal muscle regeneration in mice deficient in p38beta, p38gamma and p38delta MAP kinases.

Cell Cycle. 7(14):2208-14
Schotta, G., Sengupta, R., Kubicek, S., Malin, S., Kauer, M., Callén, E., Celeste, A., Pagani, M., Opravil, S., De La Rosa-Velazquez, IA., Espejo, A., Bedford, MT., Nussenzweig, A., Busslinger, M., Jenuwein, T. (2008)

A chromatin-wide transition to H4K20 monomethylation impairs genome integrity and programmed DNA rearrangements in the mouse.

Genes Dev. 22(15):2048-61
Cobaleda, C., Busslinger, M. (2008)

Developmental plasticity of lymphocytes.

Curr Opin Immunol. 20(2):139-48
Kolev, V., Mandinova, A., Guinea-Viniegra, J., Hu, B., Lefort, K., Lambertini, C., Neel, V., Dummer, R., Wagner, EF., Dotto, GP. (2008)

EGFR signalling as a negative regulator of Notch1 gene transcription and function in proliferating keratinocytes and cancer.

Nat Cell Biol. 10(8):902-11
Meixner, A., Zenz, R., Schonthaler, HB., Kenner, L., Scheuch, H., Penninger, JM., Wagner, EF. (2008)

Epidermal JunB represses G-CSF transcription and affects haematopoiesis and bone formation.

Nat Cell Biol. 10(8):1003-11
Vernos, I., Peters, JM. (2008)

Twenty years of cell-cycle conferences in Roscoff.

Nat Cell Biol. 10(8):877-80
Guo, F., Tänzer, S., Busslinger, M., Weih, F. (2008)

Lack of nuclear factor-kappa B2/p100 causes a RelB-dependent block in early B lymphopoiesis.

Blood. 112(3):551-9
Eferl, R., Hasselblatt, P., Rath, M., Popper, H., Zenz, R., Komnenovic, V., Idarraga, MH., Kenner, L., Wagner, EF. (2008)

Development of pulmonary fibrosis through a pathway involving the transcription factor Fra-2/AP-1.

Proc Natl Acad Sci U S A. 105(30):10525-30
de la Fuente van Bentem, S., Anrather, D., Dohnal, I., Roitinger, E., Csaszar, E., Joore, J., Buijnink, J., Carreri, A., Forzani, C., Lorkovic, ZJ., Barta, A., Lecourieux, D., Verhounig, A., Jonak, C., Hirt, H. (2008)

Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis.

J Proteome Res. 7(6):2458-70
Bozec, A., Bakiri, L., Hoebertz, A., Eferl, R., Schilling, AF., Komnenovic, V., Scheuch, H., Priemel, M., Stewart, CL., Amling, M., Wagner, EF. (2008)

Osteoclast size is controlled by Fra-2 through LIF/LIF-receptor signalling and hypoxia.

Nature. 454(7201):221-5
Neumüller, RA., Betschinger, J., Fischer, A., Bushati, N., Poernbacher, I., Mechtler, K., Cohen, SM., Knoblich, JA. (2008)

Mei-P26 regulates microRNAs and cell growth in the Drosophila ovarian stem cell lineage.

Nature. 454(7201):241-5
Koch, B., Kueng, S., Ruckenbauer, C., Wendt, KS., Peters, JM. (2008)

The Suv39h-HP1 histone methylation pathway is dispensable for enrichment and protection of cohesin at centromeres in mammalian cells.

Chromosoma. 117(2):199-210
Shibata, S., Yokota, T., Wutz, A. (2008)

Synergy of Eed and Tsix in the repression of Xist gene and X-chromosome inactivation.

EMBO J. 27(13):1816-26
Krojer, T., Sawa, J., Schäfer, E., Saibil, HR., Ehrmann, M., Clausen, T. (2008)

Structural basis for the regulated protease and chaperone function of DegP.

Nature. 453(7197):885-90
Grebien, F., Kerenyi, MA., Kovacic, B., Kolbe, T., Becker, V., Dolznig, H., Pfeffer, K., Klingmüller, U., Müller, M., Beug, H., Müllner, EW., Moriggl, R. (2008)

Stat5 activation enables erythropoiesis in the absence of EpoR and Jak2.

Blood. 111(9):4511-22
Wolter, S., Doerrie, A., Weber, A., Schneider, H., Hoffmann, E., von der Ohe, J., Bakiri, L., Wagner, EF., Resch, K., Kracht, M. (2008)

c-Jun controls histone modifications, NF-kappaB recruitment, and RNA polymerase II function to activate the ccl2 gene.

Mol Cell Biol. 28(13):4407-23
Zenz, R., Eferl, R., Scheinecker, C., Redlich, K., Smolen, J., Schonthaler, HB., Kenner, L., Tschachler, E., Wagner, EF. (2008)

Activator protein 1 (Fos/Jun) functions in inflammatory bone and skin disease.

Arthritis Res Ther. 10(1):201
Kwon, K., Hutter, C., Sun, Q., Bilic, I., Cobaleda, C., Malin, S., Busslinger, M. (2008)

Instructive role of the transcription factor E2A in early B lymphopoiesis and germinal center B cell development.

Immunity. 28(6):751-62
Pinent, M., Hackl, H., Burkard, TR., Prokesch, A., Papak, C., Scheideler, M., Hämmerle, G., Zechner, R., Trajanoski, Z., Strauss, JG. (2008)

Differential transcriptional modulation of biological processes in adipocyte triglyceride lipase and hormone-sensitive lipase-deficient mice.

Genomics. 92(1):26-32
Graf, T., Busslinger, M. (2008)

B young again.

Immunity. 28(5):606-8
Berger, J., Senti, KA., Senti, G., Newsome, TP., Asling, B., Dickson, BJ., Suzuki, T. (2008)

Systematic identification of genes that regulate neuronal wiring in the Drosophila visual system.

PLoS Genet. 4(5):e1000085
Krojer, T., Pangerl, K., Kurt, J., Sawa, J., Stingl, C., Mechtler, K., Huber, R., Ehrmann, M., Clausen, T. (2008)

Interplay of PDZ and protease domain of DegP ensures efficient elimination of misfolded proteins.

Proc Natl Acad Sci U S A. 105(22):7702-7
Bortfeldt, R., Schindler, S., Szafranski, K., Schuster, S., Holste, D. (2008)

Comparative analysis of sequence features involved in the recognition of tandem splice sites.

BMC Genomics. 9:202
Kawamata, A., Izu, Y., Yokoyama, H., Amagasa, T., Wagner, EF., Nakashima, K., Ezura, Y., Hayata, T., Noda, M. (2008)

JunD suppresses bone formation and contributes to low bone mass induced by estrogen depletion.

J Cell Biochem. 103(4):1037-45
Hoffmann, E., Ashouri, J., Wolter, S., Doerrie, A., Dittrich-Breiholz, O., Schneider, H., Wagner, EF., Troppmair, J., Mackman, N., Kracht, M. (2008)

Transcriptional regulation of EGR-1 by the interleukin-1-JNK-MKK7-c-Jun pathway.

J Biol Chem. 283(18):12120-8
Yu, JY., Dickson, BJ. (2008)

Neuroscience: hidden female talent.

Nature. 453(7191):41-2
Peters, JM. (2008)

Checkpoint control: the journey continues.

Curr Biol. 18(4):R170-2
Petronczki, M., Lénárt, P., Peters, JM. (2008)

Polo on the Rise-from Mitotic Entry to Cytokinesis with Plk1.

Dev Cell. 14(5):646-59
Grishchuk, EL., Spiridonov, IS., Volkov, VA., Efremov, A., Westermann, S., Drubin, D., Barnes, G., Ataullakhanov, FI., McIntosh, JR. (2008)

Different assemblies of the DAM1 complex follow shortening microtubules by distinct mechanisms.

Proc Natl Acad Sci U S A. 105(19):6918-23
Poser, I., Sarov, M., Hutchins, JR., Hériché, JK., Toyoda, Y., Pozniakovsky, A., Weigl, D., Nitzsche, A., Hegemann, B., Bird, AW., Pelletier, L., Kittler, R., Hua, S., Naumann, R., Augsburg, M., Sykora, MM., Hofemeister, H., Zhang, Y., Nasmyth, K., White, KP., Dietzel, S., Mechtler, K., Durbin, R., Stewart, AF., Peters, JM., Buchholz, F., Hyman, AA. (2008)

BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals.

Nat Methods. 5(5):409-15
Bowman, SK., Rolland, V., Betschinger, J., Kinsey, KA., Emery, G., Knoblich, JA. (2008)

The tumor suppressors Brat and Numb regulate transit-amplifying neuroblast lineages in Drosophila.

Dev Cell. 14(4):535-46
Taschner, MJ., Rafigh, M., Lampert, F., Schnaiter, S., Hartmann, C. (2008)

Ca2+/Calmodulin-dependent kinase II signaling causes skeletal overgrowth and premature chondrocyte maturation.

Dev Biol. 317(1):132-46
Tanaka, EM., Weidinger, G. (2008)

Micromanaging regeneration.

Genes Dev. 22(6):700-5
Datta, SR., Vasconcelos, ML., Ruta, V., Luo, S., Wong, A., Demir, E., Flores, J., Balonze, K., Dickson, BJ., Axel, R. (2008)

The Drosophila pheromone cVA activates a sexually dimorphic neural circuit.

Nature. 452(7186):473-7
Tanaka, EM., Weidinger, G. (2008)

Heads or tails: can Wnt tell which one is up?

Nat Cell Biol. 10(2):122-4
Gurzov, EN., Bakiri, L., Alfaro, JM., Wagner, EF., Izquierdo, M. (2008)

Targeting c-Jun and JunB proteins as potential anticancer cell therapy.

Oncogene. 27(5):641-52
Chen, D., Ahlford, A., Schnorrer, F., Kalchhauser, I., Fellner, M., Viràgh, E., Kiss, I., Syvänen, AC., Dickson, BJ. (2008)

High-resolution, high-throughput SNP mapping in Drosophila melanogaster.

Nat Methods. 5(4):323-9
Tomasi, T., Hakeda-Suzuki, S., Ohler, S., Schleiffer, A., Suzuki, T. (2008)

The transmembrane protein Golden goal regulates R8 photoreceptor axon-axon and axon-target interactions.

Neuron. 57(5):691-704
Taylor, S., Peters, JM. (2008)

Polo and Aurora kinases: lessons derived from chemical biology.

Curr Opin Cell Biol. 20(1):77-84
Pauli, A., Althoff, F., Oliveira, RA., Heidmann, S., Schuldiner, O., Lehner, CF., Dickson, BJ., Nasmyth, K. (2008)

Cell-type-specific TEV protease cleavage reveals cohesin functions in Drosophila neurons.

Dev Cell. 14(2):239-51
Meltzer, M., Hasenbein, S., Hauske, P., Kucz, N., Merdanovic, M., Grau, S., Beil, A., Jones, D., Krojer, T., Clausen, T., Ehrmann, M., Kaiser, M. (2008)

Allosteric activation of HtrA protease DegP by stress signals during bacterial protein quality control.

Angew Chem Int Ed Engl. 47(7):1332-4
Wendt, KS., Yoshida, K., Itoh, T., Bando, M., Koch, B., Schirghuber, E., Tsutsumi, S., Nagae, G., Ishihara, K., Mishiro, T., Yahata, K., Imamoto, F., Aburatani, H., Nakao, M., Imamoto, N., Maeshima, K., Shirahige, K., Peters, JM. (2008)

Cohesin mediates transcriptional insulation by CCCTC-binding factor.

Nature. 451(7180):796-801
Wada, T., Stepniak, E., Hui, L., Leibbrandt, A., Katada, T., Nishina, H., Wagner, EF., Penninger, JM. (2008)

Antagonistic control of cell fates by JNK and p38-MAPK signaling.

Cell Death Differ. 15(1):89-93
Yapici, N., Kim, YJ., Ribeiro, C., Dickson, BJ. (2008)

A receptor that mediates the post-mating switch in Drosophila reproductive behaviour.

Nature. 451(7174):33-7
Winter, S., Simboeck, E., Fischle, W., Zupkovitz, G., Dohnal, I., Mechtler, K., Ammerer, G., Seiser, C. (2008)

14-3-3 proteins recognize a histone code at histone H3 and are required for transcriptional activation.

EMBO J. 27(1):88-99
Kastner, B., Fischer, N., Golas, MM., Sander, B., Dube, P., Boehringer, D., Hartmuth, K., Deckert, J., Hauer, F., Wolf, E., Uchtenhagen, H., Urlaub, H., Herzog, F., Peters, JM., Poerschke, D., Lührmann, R., Stark, H. (2008)

GraFix: sample preparation for single-particle electron cryomicroscopy.

Nat Methods. 5(1):53-5
Hui, L., Zatloukal, K., Scheuch, H., Stepniak, E., Wagner, EF. (2008)

Proliferation of human HCC cells and chemically induced mouse liver cancers requires JNK1-dependent p21 downregulation.

J Clin Invest.
Mikula M., Lahsnig C., Fischer A.N.M., Proell V., Huber H., Fuchs E., Eger A., Beug H., Mikulits W. (2008)

Epithelial Plasticity of Hepatocytes During Liver Tumor Progression

Stem Cells and their Potential for Clinical Application. :123-135
Fujimori, S., Kostanova Poliakova, D., Hartmann C. (2008)

Role of Growth factors in Bone development and differentiation.

In: The Skeletal System. Ed. Pourquie, O. Cold Spring Harbor Laboratory Press, New York. Chapter:8
Schulz, DM., Kalkhof, S., Schmidt, A., Ihling, C., Stingl, C., Mechtler, K., Zschörnig, O., Sinz, A. (2007)

Annexin A2/P11 interaction: new insights into annexin A2 tetramer structure by chemical crosslinking, high-resolution mass spectrometry, and computational modeling.

Proteins. 69(2):254-69
Hui, L., Bakiri, L., Stepniak, E., Wagner, EF. (2007)

p38alpha: a suppressor of cell proliferation and tumorigenesis.

Cell Cycle. 6(20):2429-33
Dickson, BJ., Moser, EI. (2007)

Neurobiology of behaviour.

Curr Opin Neurobiol. 17(6):672-4
Nakajima, M., Kumada, K., Hatakeyama, K., Noda, T., Peters, JM., Hirota, T. (2007)

The complete removal of cohesin from chromosome arms depends on separase.

J Cell Sci. 120(Pt 23):4188-96
Jantsch, V., Tang, L., Pasierbek, P., Penkner, A., Nayak, S., Baudrimont, A., Schedl, T., Gartner, A., Loidl, J. (2007)

Caenorhabditis elegans prom-1 is required for meiotic prophase progression and homologous chromosome pairing.

Mol Biol Cell. 18(12):4911-20
Keleman, K., Krüttner, S., Alenius, M., Dickson, BJ. (2007)

Function of the Drosophila CPEB protein Orb2 in long-term courtship memory.

Nat Neurosci. 10(12):1587-93
Uanschou, C., Siwiec, T., Pedrosa-Harand, A., Kerzendorfer, C., Sanchez-Moran, E., Novatchkova, M., Akimcheva, S., Woglar, A., Klein, F., Schlögelhofer, P. (2007)

A novel plant gene essential for meiosis is related to the human CtIP and the yeast COM1/SAE2 gene.

EMBO J. 26(24):5061-70
Penkner, A., Portik-Dobos, Z., Tang, L., Schnabel, R., Novatchkova, M., Jantsch, V., Loidl, J. (2007)

A conserved function for a Caenorhabditis elegans Com1/Sae2/CtIP protein homolog in meiotic recombination.

EMBO J. 26(24):5071-82
Kappen, C., Neubüser, A., Balling, R., Finnell, R. (2007)

Molecular basis for skeletal variation: insights from developmental genetic studies in mice.

Birth Defects Res B Dev Reprod Toxicol. 80(6):425-50
Pasquali, C., Bertschy-Meier, D., Chabert, C., Curchod, ML., Arod, C., Booth, R., Mechtler, K., Vilbois, F., Xenarios, I., Ferguson, CG., Prestwich, GD., Camps, M., Rommel, C. (2007)

A chemical proteomics approach to phosphatidylinositol 3-kinase signaling in macrophages.

Mol Cell Proteomics. 6(11):1829-41
Wutz, A., Gribnau, J. (2007)

X inactivation Xplained.

Curr Opin Genet Dev. 17(5):387-93
Engblom, D., Kornfeld, JW., Schwake, L., Tronche, F., Reimann, A., Beug, H., Hennighausen, L., Moriggl, R., Schütz, G. (2007)

Direct glucocorticoid receptor-Stat5 interaction in hepatocytes controls body size and maturation-related gene expression.

Genes Dev. 21(10):1157-62
Mazanek, M., Mituloviae, G., Herzog, F., Stingl, C., Hutchins, JR., Peters, JM., Mechtler, K. (2007)

Titanium dioxide as a chemo-affinity solid phase in offline phosphopeptide chromatography prior to HPLC-MS/MS analysis.

Nat Protoc. 2(5):1059-69
Gregan, J., Riedel, CG., Petronczki, M., Cipak, L., Rumpf, C., Poser, I., Buchholz, F., Mechtler, K., Nasmyth, K. (2007)

Tandem affinity purification of functional TAP-tagged proteins from human cells.

Nat Protoc. 2(5):1145-51
Gregan, J., Riedel, CG., Pidoux, AL., Katou, Y., Rumpf, C., Schleiffer, A., Kearsey, SE., Shirahige, K., Allshire, RC., Nasmyth, K. (2007)

The kinetochore proteins Pcs1 and Mde4 and heterochromatin are required to prevent merotelic orientation.

Curr Biol. 17(14):1190-200
Schittenhelm, RB., Heeger, S., Althoff, F., Walter, A., Heidmann, S., Mechtler, K., Lehner, CF. (2007)

Spatial organization of a ubiquitous eukaryotic kinetochore protein network in Drosophila chromosomes.

Chromosoma. 116(4):385-402
Hartmann, C. (2007)

Skeletal development--Wnts are in control.

Mol Cells. 24(2):177-84
Aigner, K., Dampier, B., Descovich, L., Mikula, M., Sultan, A., Schreiber, M., Mikulits, W., Brabletz, T., Strand, D., Obrist, P., Sommergruber, W., Schweifer, N., Wernitznig, A., Beug, H., Foisner, R., Eger, A. (2007)

The transcription factor ZEB1 (deltaEF1) promotes tumour cell dedifferentiation by repressing master regulators of epithelial polarity.

Oncogene. 26(49):6979-88
Benetti, R., Gonzalo, S., Jaco, I., Schotta, G., Klatt, P., Jenuwein, T., Blasco, MA. (2007)

Suv4-20h deficiency results in telomere elongation and derepression of telomere recombination.

J Cell Biol. 178(6):925-36
Hasselblatt, P., Rath, M., Komnenovic, V., Zatloukal, K., Wagner, EF. (2007)

Hepatocyte survival in acute hepatitis is due to c-Jun/AP-1-dependent expression of inducible nitric oxide synthase.

Proc Natl Acad Sci U S A. 104(43):17105-10
Hasselblatt, H., Kurzbauer, R., Wilken, C., Krojer, T., Sawa, J., Kurt, J., Kirk, R., Hasenbein, S., Ehrmann, M., Clausen, T. (2007)

Regulation of the sigmaE stress response by DegS: how the PDZ domain keeps the protease inactive in the resting state and allows integration of different OMP-derived stress signals upon folding stress.

Genes Dev. 21(20):2659-70
Wutz, A. (2007)

Xist function: bridging chromatin and stem cells.

Trends Genet. 23(9):457-64
Cobaleda, C., Jochum, W., Busslinger, M. (2007)

Conversion of mature B cells into T cells by dedifferentiation to uncommitted progenitors.

Nature. 449(7161):473-7
Hattori, D., Demir, E., Kim, HW., Viragh, E., Zipursky, SL., Dickson, BJ. (2007)

Dscam diversity is essential for neuronal wiring and self-recognition.

Nature. 449(7159):223-7
Hanahan, D., Wagner, EF., Palmiter, RD. (2007)

The origins of oncomice: a history of the first transgenic mice genetically engineered to develop cancer.

Genes Dev. 21(18):2258-70
Martinez, J., Busslinger, M. (2007)

Life beyond cleavage: the case of Ago2 and hematopoiesis.

Genes Dev. 21(16):1983-8
Huang, J., Sengupta, R., Espejo, AB., Lee, MG., Dorsey, JA., Richter, M., Opravil, S., Shiekhattar, R., Bedford, MT., Jenuwein, T., Berger, SL. (2007)

p53 is regulated by the lysine demethylase LSD1.

Nature. 449(7158):105-8
Wisniewska, MB., Ameyar-Zazoua, M., Bakiri, L., Kaminska, B., Yaniv, M., Weitzman, JB. (2007)

Dimer composition and promoter context contribute to functional cooperation between AP-1 and NFAT.

J Mol Biol. 371(3):569-76
Jiménez, JL., Hegemann, B., Hutchins, JR., Peters, JM., Durbin, R. (2007)

A systematic comparative and structural analysis of protein phosphorylation sites based on the mtcPTM database.

Genome Biol. 8(5):R90
Rath, O., Himmler, A., Baum, A., Sommergruber, W., Beug, H., Metz, T. (2007)

c-Myc is required for transformation of FDC-P1 cells by EGFRvIII.

FEBS Lett. 581(13):2549-56
Eferl, R., Zenz, R., Theussl, HC., Wagner, EF. (2007)

Simultaneous generation of fra-2 conditional and fra-2 knock-out mice.

Genesis. 45(7):447-51
Herzig, M., Savarese, F., Novatchkova, M., Semb, H., Christofori, G. (2007)

Tumor progression induced by the loss of E-cadherin independent of beta-catenin/Tcf-mediated Wnt signaling.

Oncogene. 26(16):2290-8
Kuba, K., Zhang, L., Imai, Y., Arab, S., Chen, M., Maekawa, Y., Leschnik, M., Leibbrandt, A., Markovic, M., Makovic, M., Schwaighofer, J., Beetz, N., Musialek, R., Neely, GG., Komnenovic, V., Kolm, U., Metzler, B., Ricci, R., Hara, H., Meixner, A., Nghiem, M., Chen, X., Dawood, F., Wong, KM., Sarao, R., Cukerman, E., Kimura, A., Hein, L., Thalhammer, J., Liu, PP., Penninger, JM. (2007)

Impaired heart contractility in Apelin gene-deficient mice associated with aging and pressure overload.

Circ Res. 101(4):e32-42
Amsen, D., Antov, A., Jankovic, D., Sher, A., Radtke, F., Souabni, A., Busslinger, M., McCright, B., Gridley, T., Flavell, RA. (2007)

Direct regulation of Gata3 expression determines the T helper differentiation potential of Notch.

Immunity. 27(1):89-99
Schebesta, A., McManus, S., Salvagiotto, G., Delogu, A., Busslinger, GA., Busslinger, M. (2007)

Transcription factor Pax5 activates the chromatin of key genes involved in B cell signaling, adhesion, migration, and immune function.

Immunity. 27(1):49-63
Regha, K., Sloane, MA., Huang, R., Pauler, FM., Warczok, KE., Melikant, B., Radolf, M., Martens, JH., Schotta, G., Jenuwein, T., Barlow, DP. (2007)

Active and repressive chromatin are interspersed without spreading in an imprinted gene cluster in the mammalian genome.

Mol Cell. 27(3):353-66
Ott, RG., Simma, O., Kollmann, K., Weisz, E., Zebedin, EM., Schorpp-Kistner, M., Heller, G., Zöchbauer, S., Wagner, EF., Freissmuth, M., Sexl, V. (2007)

JunB is a gatekeeper for B-lymphoid leukemia.

Oncogene. 26(33):4863-71
Yamashita, T., Yao, Z., Li, F., Zhang, Q., Badell, IR., Schwarz, EM., Takeshita, S., Wagner, EF., Noda, M., Matsuo, K., Xing, L., Boyce, BF. (2007)

NF-kappaB p50 and p52 regulate receptor activator of NF-kappaB ligand (RANKL) and tumor necrosis factor-induced osteoclast precursor differentiation by activating c-Fos and NFATc1.

J Biol Chem. 282(25):18245-18253
Ivanov, D., Nasmyth, K. (2007)

A physical assay for sister chromatid cohesion in vitro.

Mol Cell. 27(2):300-10
Gillardon, F., Kloss, A., Berg, M., Neumann, M., Mechtler, K., Hengerer, B., Dahlmann, B. (2007)

The 20S proteasome isolated from Alzheimer's disease brain shows post-translational modifications but unchanged proteolytic activity.

J Neurochem. 101(6):1483-90
Hui, L., Bakiri, L., Mairhorfer, A., Schweifer, N., Haslinger, C., Kenner, L., Komnenovic, V., Scheuch, H., Beug, H., Wagner, EF. (2007)

p38alpha suppresses normal and cancer cell proliferation by antagonizing the JNK-c-Jun pathway.

Nat Genet. 39(6):741-9
Obernosterer, G., Martinez, J., Alenius, M. (2007)

Locked nucleic acid-based in situ detection of microRNAs in mouse tissue sections.

Nat Protoc. 2(6):1508-14
Lööf, S., Straube, WL., Drechsel, D., Tanaka, EM., Simon, A. (2007)

Plasticity of mammalian myotubes upon stimulation with a thrombin-activated serum factor.

Cell Cycle. 6(9):1096-101
Dietzl, G., Chen, D., Schnorrer, F., Su, KC., Barinova, Y., Fellner, M., Gasser, B., Kinsey, K., Oppel, S., Scheiblauer, S., Couto, A., Marra, V., Keleman, K., Dickson, BJ. (2007)

A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila.

Nature. 448(7150):151-6
Hartler, J., Thallinger, GG., Stocker, G., Sturn, A., Burkard, TR., Körner, E., Rader, R., Schmidt, A., Mechtler, K., Trajanoski, Z. (2007)

MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data.

BMC Bioinformatics. 8:197
Naetar, N., Hutter, S., Dorner, D., Dechat, T., Korbei, B., Gotzmann, J., Beug, H., Foisner, R. (2007)

LAP2alpha-binding protein LINT-25 is a novel chromatin-associated protein involved in cell cycle exit.

J Cell Sci. 120(Pt 5):737-47
Penkner, A., Tang, L., Novatchkova, M., Ladurner, M., Fridkin, A., Gruenbaum, Y., Schweizer, D., Loidl, J., Jantsch, V. (2007)

The nuclear envelope protein Matefin/SUN-1 is required for homologous pairing in C. elegans meiosis.

Dev Cell. 12(6):873-85
Watrin, E., Peters, JM. (2007)

Molecular biology. How and when the genome sticks together.

Science. 317(5835):209-10
McGarvey, KM., Greene, E., Fahrner, JA., Jenuwein, T., Baylin, SB. (2007)

DNA methylation and complete transcriptional silencing of cancer genes persist after depletion of EZH2.

Cancer Res. 67(11):5097-102
Vogel, J., Weigand, MA., Behrens, A., Wagner, EF., Schorpp-Kistner, M., Zimmermann, M., Schenkel, J. (2007)

Infarct volume after transient middle cerebral artery occlusion (MCAo) can be reduced by attenuation but not by inactivation of c-Jun action.

Brain Res. 1151:12-9
Gebeshuber, CA., Sladecek, S., Grunert, S. (2007)

Beta-catenin/LEF-1 signalling in breast cancer--central players activated by a plethora of inputs.

Cells Tissues Organs. 185(1-3):51-60
Bruce, SJ., Rea, RW., Steptoe, AL., Busslinger, M., Bertram, JF., Perkins, AC. (2007)

In vitro differentiation of murine embryonic stem cells toward a renal lineage.

Differentiation. 75(5):337-49
Cobaleda, C., Schebesta, A., Delogu, A., Busslinger, M. (2007)

Pax5: the guardian of B cell identity and function.

Nat Immunol. 8(5):463-70
Villa, R., Pasini, D., Gutierrez, A., Morey, L., Occhionorelli, M., Viré, E., Nomdedeu, JF., Jenuwein, T., Pelicci, PG., Minucci, S., Fuks, F., Helin, K., Di Croce, L. (2007)

Role of the polycomb repressive complex 2 in acute promyelocytic leukemia.

Cancer Cell. 11(6):513-25
Andrade, N., Komnenovic, V., Blake, SM., Jossin, Y., Howell, B., Goffinet, A., Schneider, WJ., Nimpf, J. (2007)

ApoER2/VLDL receptor and Dab1 in the rostral migratory stream function in postnatal neuronal migration independently of Reelin.

Proc Natl Acad Sci U S A. 104(20):8508-13
Bakker, WJ., van Dijk, TB., Parren-van Amelsvoort, M., Kolbus, A., Yamamoto, K., Steinlein, P., Verhaak, RG., Mak, TW., Beug, H., Löwenberg, B., von Lindern, M. (2007)

Differential regulation of Foxo3a target genes in erythropoiesis.

Mol Cell Biol. 27(10):3839-3854
Keene, AC., Waddell, S. (2007)

Drosophila olfactory memory: single genes to complex neural circuits.

Nat Rev Neurosci. 8(5):341-54
Cowan, CR., Hyman, AA. (2007)

Acto-myosin reorganization and PAR polarity in C. elegans.

Development. 134(6):1035-43
Maurer-Stroh, S., Koranda, M., Benetka, W., Schneider, G., Sirota, FL., Eisenhaber, F. (2007)

Towards complete sets of farnesylated and geranylgeranylated proteins.

PLoS Comput Biol. 3(4):e66
Fischer, AN., Fuchs, E., Mikula, M., Huber, H., Beug, H., Mikulits, W. (2007)

PDGF essentially links TGF-beta signaling to nuclear beta-catenin accumulation in hepatocellular carcinoma progression.

Oncogene. 26(23):3395-405
Tsareva, SA., Moriggl, R., Corvinus, FM., Wiederanders, B., Schütz, A., Kovacic, B., Friedrich, K. (2007)

Signal transducer and activator of transcription 3 activation promotes invasive growth of colon carcinomas through matrix metalloproteinase induction.

Neoplasia. 9(4):279-91
Aigner, K., Descovich, L., Mikula, M., Sultan, A., Dampier, B., Bonné, S., van Roy, F., Mikulits, W., Schreiber, M., Brabletz, T., Sommergruber, W., Schweifer, N., Wernitznig, A., Beug, H., Foisner, R., Eger, A. (2007)

The transcription factor ZEB1 (deltaEF1) represses Plakophilin 3 during human cancer progression.

FEBS Lett. 581(8):1617-24
Eisenhaber, B., Chumak, N., Eisenhaber, F., Hauser, MT. (2007)

The ring between ring fingers (RBR) protein family.

Genome Biol. 8(3):209
Perdiguero, E., Ruiz-Bonilla, V., Gresh, L., Hui, L., Ballestar, E., Sousa-Victor, P., Baeza-Raja, B., Jardí, M., Bosch-Comas, A., Esteller, M., Caelles, C., Serrano, AL., Wagner, EF., Muñoz-Cánoves, P. (2007)

Genetic analysis of p38 MAP kinases in myogenesis: fundamental role of p38alpha in abrogating myoblast proliferation.

EMBO J. 26(5):1245-56
Schmitz, J., Watrin, E., Lénárt, P., Mechtler, K., Peters, JM. (2007)

Sororin is required for stable binding of cohesin to chromatin and for sister chromatid cohesion in interphase.

Curr Biol. 17(7):630-6
Bakiri, L., Takada, Y., Radolf, M., Eferl, R., Yaniv, M., Wagner, EF., Matsuo, K. (2007)

Role of heterodimerization of c-Fos and Fra1 proteins in osteoclast differentiation.

Bone. 40(4):867-75
Schnorrer, F., Kalchhauser, I., Dickson, BJ. (2007)

The transmembrane protein Kon-tiki couples to Dgrip to mediate myotube targeting in Drosophila.

Dev Cell. 12(5):751-66
Lipp, JJ., Hirota, T., Poser, I., Peters, JM. (2007)

Aurora B controls the association of condensin I but not condensin II with mitotic chromosomes.

J Cell Sci. 120(Pt 7):1245-55
Magnusson, M., Brun, AC., Miyake, N., Larsson, J., Ehinger, M., Bjornsson, JM., Wutz, A., Sigvardsson, M., Karlsson, S. (2007)

HOXA10 is a critical regulator for hematopoietic stem cells and erythroid/megakaryocyte development.

Blood. 109(9):3687-96
Rudolph, T., Yonezawa, M., Lein, S., Heidrich, K., Kubicek, S., Schäfer, C., Phalke, S., Walther, M., Schmidt, A., Jenuwein, T., Reuter, G. (2007)

Heterochromatin formation in Drosophila is initiated through active removal of H3K4 methylation by the LSD1 homolog SU(VAR)3-3.

Mol Cell. 26(1):103-15
Aschenbrenner, K., D'Cruz, LM., Vollmann, EH., Hinterberger, M., Emmerich, J., Swee, LK., Rolink, A., Klein, L. (2007)

Selection of Foxp3+ regulatory T cells specific for self antigen expressed and presented by Aire+ medullary thymic epithelial cells.

Nat Immunol. 8(4):351-8
Skok, JA., Gisler, R., Novatchkova, M., Farmer, D., de Laat, W., Busslinger, M. (2007)

Reversible contraction by looping of the Tcra and Tcrb loci in rearranging thymocytes.

Nat Immunol. 8(4):378-87
Wiesenberger, G., Speer, F., Haller, G., Bonnefoy, N., Schleiffer, A., Schafer, B. (2007)

RNA degradation in fission yeast mitochondria is stimulated by a member of a new family of proteins that are conserved in lower eukaryotes.

J Mol Biol. 367(3):681-91
Casalino, L., Bakiri, L., Talotta, F., Weitzman, JB., Fusco, A., Yaniv, M., Verde, P. (2007)

Fra-1 promotes growth and survival in RAS-transformed thyroid cells by controlling cyclin A transcription.

EMBO J. 26(7):1878-90
Peters, JM. (2007)

Cell biology: the checkpoint brake relieved.

Nature. 446(7138):868-9
Wissmann, M., Yin, N., Müller, JM., Greschik, H., Fodor, BD., Jenuwein, T., Vogler, C., Schneider, R., Günther, T., Buettner, R., Metzger, E., Schüle, R. (2007)

Cooperative demethylation by JMJD2C and LSD1 promotes androgen receptor-dependent gene expression.

Nat Cell Biol. 9(3):347-53
Ehrlich, I., Klein, M., Rumpel, S., Malinow, R. (2007)

PSD-95 is required for activity-driven synapse stabilization.

Proc Natl Acad Sci U S A. 104(10):4176-81
Ohm, JE., McGarvey, KM., Yu, X., Cheng, L., Schuebel, KE., Cope, L., Mohammad, HP., Chen, W., Daniel, VC., Yu, W., Berman, DM., Jenuwein, T., Pruitt, K., Sharkis, SJ., Watkins, DN., Herman, JG., Baylin, SB. (2007)

A stem cell-like chromatin pattern may predispose tumor suppressor genes to DNA hypermethylation and heritable silencing.

Nat Genet. 39(2):237-42
Kurtovic, A., Widmer, A., Dickson, BJ. (2007)

A single class of olfactory neurons mediates behavioural responses to a Drosophila sex pheromone.

Nature. 446(7135):542-6
Lénárt, P., Petronczki, M., Steegmaier, M., Di Fiore, B., Lipp, JJ., Hoffmann, M., Rettig, WJ., Kraut, N., Peters, JM. (2007)

The small-molecule inhibitor BI 2536 reveals novel insights into mitotic roles of polo-like kinase 1.

Curr Biol. 17(4):304-15
Ng, K., Pullirsch, D., Leeb, M., Wutz, A. (2007)

Xist and the order of silencing.

EMBO Rep. 8(1):34-9
Takada, Y., Isono, K., Shinga, J., Turner, JM., Kitamura, H., Ohara, O., Watanabe, G., Singh, PB., Kamijo, T., Jenuwein, T., Burgoyne, PS., Koseki, H. (2007)

Mammalian Polycomb Scmh1 mediates exclusion of Polycomb complexes from the XY body in the pachytene spermatocytes.

Development. 134(3):579-90
Steegmaier, M., Hoffmann, M., Baum, A., Lénárt, P., Petronczki, M., Krssák, M., Gürtler, U., Garin-Chesa, P., Lieb, S., Quant, J., Grauert, M., Adolf, GR., Kraut, N., Peters, JM., Rettig, WJ. (2007)

BI 2536, a potent and selective inhibitor of polo-like kinase 1, inhibits tumor growth in vivo.

Curr Biol. 17(4):316-22
Kubicek, S., O'Sullivan, RJ., August, EM., Hickey, ER., Zhang, Q., Teodoro, ML., Rea, S., Mechtler, K., Kowalski, JA., Homon, CA., Kelly, TA., Jenuwein, T. (2007)

Reversal of H3K9me2 by a small-molecule inhibitor for the G9a histone methyltransferase.

Mol Cell. 25(3):473-81
Harir, N., Pecquet, C., Kerenyi, M., Sonneck, K., Kovacic, B., Nyga, R., Brevet, M., Dhennin, I., Gouilleux-Gruart, V., Beug, H., Valent, P., Lassoued, K., Moriggl, R., Gouilleux, F. (2007)

Constitutive activation of Stat5 promotes its cytoplasmic localization and association with PI3-kinase in myeloid leukemias.

Blood. 109(4):1678-86
Katiyar, S., Jiao, X., Wagner, E., Lisanti, MP., Pestell, RG. (2007)

Somatic excision demonstrates that c-Jun induces cellular migration and invasion through induction of stem cell factor.

Mol Cell Biol. 27(4):1356-69
Sweeney, LB., Couto, A., Chou, YH., Berdnik, D., Dickson, BJ., Luo, L., Komiyama, T. (2007)

Temporal target restriction of olfactory receptor neurons by Semaphorin-1a/PlexinA-mediated axon-axon interactions.

Neuron. 53(2):185-200
Roessler, S., Györy, I., Imhof, S., Spivakov, M., Williams, RR., Busslinger, M., Fisher, AG., Grosschedl, R. (2007)

Distinct promoters mediate the regulation of Ebf1 gene expression by interleukin-7 and Pax5.

Mol Cell Biol. 27(2):579-94
Burkard, TR., Trajanoski, Z., Novatchkova, M., Hackl, H., Eisenhaber, F. (2007)

Identification of new targets using expression profiling.

In Antiangiogenic cancer therapy (Davis, D.R., Herbst, R.S., & Abbruzzese, J.L., eds.); CRC Press Taylor & Francis Group, Boca Raton London New York.. :415-41
Gregan, J., Rabitsch, PK., Rumpf, C., Novatchkova, M., Schleiffer, A., Nasmyth, K. (2006)

High-throughput knockout screen in fission yeast.

Nat Protoc. 1(5):2457-64
Rubiolo, C., Piazzolla, D., Meissl, K., Beug, H., Huber, JC., Kolbus, A., Baccarini, M. (2006)

A balance between Raf-1 and Fas expression sets the pace of erythroid differentiation.

Blood. 108(1):152-9
Ihling, C., Schmidt, A., Kalkhof, S., Schulz, DM., Stingl, C., Mechtler, K., Haack, M., Beck-Sickinger, AG., Cooper, DMF., Sinz, A. (2006)

Isotope-labeled cross-linkers and Fourier transform ion cyclotron resonance mass spectrometry for structural analysis of a protein/peptide complex.

J Am Soc Mass Spectrom. 17(8):1100-1113
Mitulovic, G., Mechtler, K. (2006)

HPLC techniques for proteomics analysis--a short overview of latest developments.

Brief Funct Genomic Proteomic. 5(4):249-60
Vrontou, E., Nilsen, SP., Demir, E., Kravitz, EA., Dickson, BJ. (2006)

fruitless regulates aggression and dominance in Drosophila.

Nat Neurosci. 9(12):1469-71
Stingl, C., Ihling, C., Ammerer, G., Sinz, A., Mechtler, K. (2006)

Application of different fragmentation techniques for the analysis of phosphopeptides using a hybrid linear ion trap-FTICR mass spectrometer.

Biochim Biophys Acta. 1764(12):1842-52
Benetka, W., Koranda, M., Maurer-Stroh, S., Pittner, F., Eisenhaber, F. (2006)

Farnesylation or geranylgeranylation? Efficient assays for testing protein prenylation in vitro and in vivo.

BMC Biochem. 7:6
Teis, D., Taub, N., Kurzbauer, R., Hilber, D., de Araujo, ME., Erlacher, M., Offterdinger, M., Villunger, A., Geley, S., Bohn, G., Klein, C., Hess, MW., Huber, LA. (2006)

p14-MP1-MEK1 signaling regulates endosomal traffic and cellular proliferation during tissue homeostasis.

J Cell Biol. 175(6):861-8
Straube, WL., Tanaka, EM. (2006)

Reversibility of the differentiated state: regeneration in amphibians.

Artif Organs. 30(10):743-55
Kueng, S., Hegemann, B., Peters, BH., Lipp, JJ., Schleiffer, A., Mechtler, K., Peters, JM. (2006)

Wapl controls the dynamic association of cohesin with chromatin.

Cell. 127(5):955-67
Huang, J., Perez-Burgos, L., Placek, BJ., Sengupta, R., Richter, M., Dorsey, JA., Kubicek, S., Opravil, S., Jenuwein, T., Berger, SL. (2006)

Repression of p53 activity by Smyd2-mediated methylation.

Nature. 444(7119):629-32
Janda, E., Nevolo, M., Lehmann, K., Downward, J., Beug, H., Grieco, M. (2006)

Raf plus TGFbeta-dependent EMT is initiated by endocytosis and lysosomal degradation of E-cadherin.

Oncogene. 25(54):7117-30
Dickson, BJ., Gilestro, GF. (2006)

Regulation of commissural axon pathfinding by slit and its Robo receptors.

Annu Rev Cell Dev Biol. 22:651-75
Später, D., Hill, TP., Gruber, M., Hartmann, C. (2006)

Role of canonical Wnt-signalling in joint formation.

Eur Cell Mater. 12:71-80
Gruber, S., Arumugam, P., Katou, Y., Kuglitsch, D., Helmhart, W., Shirahige, K., Nasmyth, K. (2006)

Evidence that loading of cohesin onto chromosomes involves opening of its SMC hinge.

Cell. 127(3):523-37
Arumugam, P., Nishino, T., Haering, CH., Gruber, S., Nasmyth, K. (2006)

Cohesin's ATPase activity is stimulated by the C-terminal Winged-Helix domain of its kleisin subunit.

Curr Biol. 16(20):1998-2008
Mujezinovic, N., Raidl, G., Hutchins, JR., Peters, JM., Mechtler, K., Eisenhaber, F. (2006)

Cleaning of raw peptide MS/MS spectra: improved protein identification following deconvolution of multiply charged peaks, isotope clusters, and removal of background noise.

Proteomics. 6(19):5117-31
Schubert, D., Primavesi, L., Bishopp, A., Roberts, G., Doonan, J., Jenuwein, T., Goodrich, J. (2006)

Silencing by plant Polycomb-group genes requires dispersed trimethylation of histone H3 at lysine 27.

EMBO J. 25(19):4638-49
Petronczki, M., Matos, J., Mori, S., Gregan, J., Bogdanova, A., Schwickart, M., Mechtler, K., Shirahige, K., Zachariae, W., Nasmyth, K. (2006)

Monopolar attachment of sister kinetochores at meiosis I requires casein kinase 1.

Cell. 126(6):1049-64
Breithaupt, C., Kurzbauer, R., Lilie, H., Schaller, A., Strassner, J., Huber, R., Macheroux, P., Clausen, T. (2006)

Crystal structure of 12-oxophytodienoate reductase 3 from tomato: self-inhibition by dimerization.

Proc Natl Acad Sci U S A. 103(39):14337-42
Brinkman, AB., Roelofsen, T., Pennings, SW., Martens, JH., Jenuwein, T., Stunnenberg, HG. (2006)

Histone modification patterns associated with the human X chromosome.

EMBO Rep. 7(6):628-34
Gerlich, D., Koch, B., Dupeux, F., Peters, JM., Ellenberg, J. (2006)

Live-cell imaging reveals a stable cohesin-chromatin interaction after but not before DNA replication.

Curr Biol. 16(15):1571-8
Hutterer, A., Berdnik, D., Wirtz-Peitz, F., Zigman, M., Schleiffer, A., Knoblich, JA. (2006)

Mitotic activation of the kinase Aurora-A requires its binding partner Bora.

Dev Cell. 11(2):147-57
Waerner, T., Alacakaptan, M., Tamir, I., Oberauer, R., Gal, A., Brabletz, T., Schreiber, M., Jechlinger, M., Beug, H. (2006)

ILEI: a cytokine essential for EMT, tumor formation, and late events in metastasis in epithelial cells.

Cancer Cell. 10(3):227-39
Savarese, F., Flahndorfer, K., Jaenisch, R., Busslinger, M., Wutz, A. (2006)

Hematopoietic precursor cells transiently reestablish permissiveness for X inactivation.

Mol Cell Biol. 26(19):7167-77
Später, D., Hill, TP., O'sullivan, RJ., Gruber, M., Conner, DA., Hartmann, C. (2006)

Wnt9a signaling is required for joint integrity and regulation of Ihh during chondrogenesis.

Development. 133(15):3039-49
Morandell, S., Stasyk, T., Grosstessner-Hain, K., Roitinger, E., Mechtler, K., Bonn, GK., Huber, LA. (2006)

Phosphoproteomics strategies for the functional analysis of signal transduction.

Proteomics. 6(14):4047-56
Peters, JM. (2006)

The anaphase promoting complex/cyclosome: a machine designed to destroy.

Nat Rev Mol Cell Biol. 7(9):644-56
Weisheit, G., Gliem, M., Endl, E., Pfeffer, PL., Busslinger, M., Schilling, K. (2006)

Postnatal development of the murine cerebellar cortex: formation and early dispersal of basket, stellate and Golgi neurons.

Eur J Neurosci. 24(2):466-78
Chaumeil, J., Le Baccon, P., Wutz, A., Heard, E. (2006)

A novel role for Xist RNA in the formation of a repressive nuclear compartment into which genes are recruited when silenced.

Genes Dev. 20(16):2223-37
Stepniak, E., Ricci, R., Eferl, R., Sumara, G., Sumara, I., Rath, M., Hui, L., Wagner, EF. (2006)

c-Jun/AP-1 controls liver regeneration by repressing p53/p21 and p38 MAPK activity.

Genes Dev. 20(16):2306-14
Jenuwein, T. (2006)

The epigenetic magic of histone lysine methylation.

FEBS J. 273(14):3121-35
Etchegaray, JP., Yang, X., DeBruyne, JP., Peters, AHFM., Weaver, DR., Jenuwein, T., Reppert, SM. (2006)

The polycomb group protein EZH2 is required for mammalian circadian clock function.

J Biol Chem. 281(30):21209-21215
Fujimura, Y., Isono, K., Vidal, M., Endoh, M., Kajita, H., Mizutani-Koseki, Y., Takihara, Y., van Lohuizen, M., Otte, A., Jenuwein, T., Deschamps, J., Koseki, H. (2006)

Distinct roles of Polycomb group gene products in transcriptionally repressed and active domains of Hoxb8.

Development. 133(12):2371-81
Kvitsiani, D., Dickson, BJ. (2006)

Shared neural circuitry for female and male sexual behaviours in Drosophila.

Curr Biol. 16(10):R355-6
Schoeftner, S., Sengupta, AK., Kubicek, S., Mechtler, K., Spahn, L., Koseki, H., Jenuwein, T., Wutz, A. (2006)

Recruitment of PRC1 function at the initiation of X inactivation independent of PRC2 and silencing.

EMBO J. 25(13):3110-22
Watrin, E., Peters, JM. (2006)

Cohesin and DNA damage repair.

Exp Cell Res. 312(14):2687-93
Kovacic, B., Stoiber, D., Moriggl, R., Weisz, E., Ott, RG., Kreibich, R., Levy, DE., Beug, H., Freissmuth, M., Sexl, V. (2006)

STAT1 acts as a tumor promoter for leukemia development.

Cancer Cell. 10(1):77-87
Rangachari, M., Mauermann, N., Marty, RR., Dirnhofer, S., Kurrer, MO., Komnenovic, V., Penninger, JM., Eriksson, U. (2006)

T-bet negatively regulates autoimmune myocarditis by suppressing local production of interleukin 17.

J Exp Med. 203(8):2009-19
Abzhanov, A., Kuo, WP., Hartmann, C., Grant, BR., Grant, PR., Tabin, CJ. (2006)

The calmodulin pathway and evolution of elongated beak morphology in Darwin's finches.

Nature. 442(7102):563-7
Hernandez-Hernandez, A., Ray, P., Litos, G., Ciro, M., Ottolenghi, S., Beug, H., Boyes, J. (2006)

Acetylation and MAPK phosphorylation cooperate to regulate the degradation of active GATA-1.

EMBO J. 25(14):3264-74
Ebert, A., Lein, S., Schotta, G., Reuter, G. (2006)

Histone modification and the control of heterochromatic gene silencing in Drosophila.

Chromosome Res. 14(4):377-92
Novatchkova, M., Schneider, G., Fritz, R., Eisenhaber, F., Schleiffer, A. (2006)

DOUTfinder--identification of distant domain outliers using subsignificant sequence similarity.

Nucleic Acids Res. 34(Web Server issue):W214-8
Kudo, NR., Wassmann, K., Anger, M., Schuh, M., Wirth, KG., Xu, H., Helmhart, W., Kudo, H., McKay, M., Maro, B., Ellenberg, J., de Boer, P., Nasmyth, K. (2006)

Resolution of chiasmata in oocytes requires separase-mediated proteolysis.

Cell. 126(1):135-46
Zenz, R., Wagner, EF. (2006)

Jun signalling in the epidermis: From developmental defects to psoriasis and skin tumors.

Int J Biochem Cell Biol. 38(7):1043-9
Lénárt, P., Peters, JM. (2006)

Checkpoint activation: don't get mad too much.

Curr Biol. 16(11):R412-4
Steffen, A., Faix, J., Resch, GP., Linkner, J., Wehland, J., Small, JV., Rottner, K., Stradal, TE. (2006)

Filopodia formation in the absence of functional WAVE- and Arp2/3-complexes.

Mol Biol Cell. 17(6):2581-91
Bradley, SP., Kaminski, DA., Peters, AH., Jenuwein, T., Stavnezer, J. (2006)

The histone methyltransferase Suv39h1 increases class switch recombination specifically to IgA.

J Immunol. 177(2):1179-88
Hoelbl, A., Kovacic, B., Kerenyi, MA., Simma, O., Warsch, W., Cui, Y., Beug, H., Hennighausen, L., Moriggl, R., Sexl, V. (2006)

Clarifying the role of Stat5 in lymphoid development and Abelson-induced transformation.

Blood. 107(12):4898-906
Obernosterer, G., Leuschner, PJ., Alenius, M., Martinez, J. (2006)

Post-transcriptional regulation of microRNA expression.

RNA. 12(7):1161-7
Jechlinger, M., Sommer, A., Moriggl, R., Seither, P., Kraut, N., Capodiecci, P., Donovan, M., Cordon-Cardo, C., Beug, H., Grünert, S. (2006)

Autocrine PDGFR signaling promotes mammary cancer metastasis.

J Clin Invest. 116(6):1561-70
Fodor, BD., Kubicek, S., Yonezawa, M., O'Sullivan, RJ., Sengupta, R., Perez-Burgos, L., Opravil, S., Mechtler, K., Schotta, G., Jenuwein, T. (2006)

Jmjd2b antagonizes H3K9 trimethylation at pericentric heterochromatin in mammalian cells.

Genes Dev. 20(12):1557-62
Shumaker, DK., Dechat, T., Kohlmaier, A., Adam, SA., Bozovsky, MR., Erdos, MR., Eriksson, M., Goldman, AE., Khuon, S., Collins, FS., Jenuwein, T., Goldman, RD. (2006)

Mutant nuclear lamin A leads to progressive alterations of epigenetic control in premature aging.

Proc Natl Acad Sci U S A. 103(23):8703-8
Bowman, SK., Neumüller, RA., Novatchkova, M., Du, Q., Knoblich, JA. (2006)

The Drosophila NuMA Homolog Mud regulates spindle orientation in asymmetric cell division.

Dev Cell. 10(6):731-42
Hartmann, C. (2006)

A Wnt canon orchestrating osteoblastogenesis.

Trends Cell Biol. 16(3):151-8
Watrin, E., Schleiffer, A., Tanaka, K., Eisenhaber, F., Nasmyth, K., Peters, JM. (2006)

Human Scc4 is required for cohesin binding to chromatin, sister-chromatid cohesion, and mitotic progression.

Curr Biol. 16(9):863-74
Gotzmann, J., Fischer, AN., Zojer, M., Mikula, M., Proell, V., Huber, H., Jechlinger, M., Waerner, T., Weith, A., Beug, H., Mikulits, W. (2006)

A crucial function of PDGF in TGF-beta-mediated cancer progression of hepatocytes.

Oncogene. 25(22):3170-85
Leuschner, PJ., Ameres, SL., Kueng, S., Martinez, J. (2006)

Cleavage of the siRNA passenger strand during RISC assembly in human cells.

EMBO Rep. 7(3):314-20
Kyewski, B., Klein, L. (2006)

A central role for central tolerance.

Annu Rev Immunol. 24:571-606
Dolznig, H., Grebien, F., Deiner, EM., Stangl, K., Kolbus, A., Habermann, B., Kerenyi, MA., Kieslinger, M., Moriggl, R., Beug, H., Müllner, EW. (2006)

Erythroid progenitor renewal versus differentiation: genetic evidence for cell autonomous, essential functions of EpoR, Stat5 and the GR.

Oncogene. 25(20):2890-900
Schranzhofer, M., Schifrer, M., Cabrera, JA., Kopp, S., Chiba, P., Beug, H., Müllner, EW. (2006)

Remodeling the regulation of iron metabolism during erythroid differentiation to ensure efficient heme biosynthesis.

Blood. 107(10):4159-67
Riedel, CG., Katis, VL., Katou, Y., Mori, S., Itoh, T., Helmhart, W., Gálová, M., Petronczki, M., Gregan, J., Cetin, B., Mudrak, I., Ogris, E., Mechtler, K., Pelletier, L., Buchholz, F., Shirahige, K., Nasmyth, K. (2006)

Protein phosphatase 2A protects centromeric sister chromatid cohesion during meiosis I.

Nature. 441(7089):53-61
Grote, D., Souabni, A., Busslinger, M., Bouchard, M. (2006)

Pax 2/8-regulated Gata 3 expression is necessary for morphogenesis and guidance of the nephric duct in the developing kidney.

Development. 133(1):53-61
McGarvey, KM., Fahrner, JA., Greene, E., Martens, J., Jenuwein, T., Baylin, SB. (2006)

Silenced tumor suppressor genes reactivated by DNA demethylation do not return to a fully euchromatic chromatin state.

Cancer Res. 66(7):3541-9
Hill, TP., Taketo, MM., Birchmeier, W., Hartmann, C. (2006)

Multiple roles of mesenchymal beta-catenin during murine limb patterning.

Development. 133(7):1219-29
Beard, C., Hochedlinger, K., Plath, K., Wutz, A., Jaenisch, R. (2006)

Efficient method to generate single-copy transgenic mice by site-specific integration in embryonic stem cells.

Genesis. 44(1):23-8
Haemmerle, G., Lass, A., Zimmermann, R., Gorkiewicz, G., Meyer, C., Rozman, J., Heldmaier, G., Maier, R., Theussl, C., Eder, S., Kratky, D., Wagner, EF., Klingenspor, M., Hoefler, G., Zechner, R. (2006)

Defective lipolysis and altered energy metabolism in mice lacking adipose triglyceride lipase.

Science. 312(5774):734-7
Hess, MW., Pfaller, K., Hampölz, B., Longato, S., Teis, D., Flörl, A., Gutleben, K., Huber, LA. (2006)

Microscopy of the Drosophila facet eye: vademecum for standardized fixation, embedding, and sectioning.

Microsc Res Tech. 69(2):93-8
Grau, S., Richards, PJ., Kerr, B., Hughes, C., Caterson, B., Williams, AS., Junker, U., Jones, SA., Clausen, T., Ehrmann, M. (2006)

The role of human HtrA1 in arthritic disease.

J Biol Chem. 281(10):6124-9
Schneider, G., Neuberger, G., Wildpaner, M., Tian, S., Berezovsky, I., Eisenhaber, F. (2006)

Application of a sensitive collection heuristic for very large protein families: evolutionary relationship between adipose triglyceride lipase (ATGL) and classic mammalian lipases.

BMC Bioinformatics. 7:164
Betschinger, J., Mechtler, K., Knoblich, JA. (2006)

Asymmetric segregation of the tumor suppressor brat regulates self-renewal in Drosophila neural stem cells.

Cell. 124(6):1241-53
Gerlich, D., Hirota, T., Koch, B., Peters, JM., Ellenberg, J. (2006)

Condensin I stabilizes chromosomes mechanically through a dynamic interaction in live cells.

Curr Biol. 16(4):333-44
Wirth, KG., Wutz, G., Kudo, NR., Desdouets, C., Zetterberg, A., Taghybeeglu, S., Seznec, J., Ducos, GM., Ricci, R., Firnberg, N., Peters, JM., Nasmyth, K. (2006)

Separase: a universal trigger for sister chromatid disjunction but not chromosome cycle progression.

J Cell Biol. 172(6):847-60
Buschhorn, BA., Peters, JM. (2006)

How APC/C orders destruction.

Nat Cell Biol. 8(3):209-11
Kubicek, S., Schotta, G., Lachner, M., Sengupta, R., Kohlmaier, A., Perez-Burgos, L., Linderson, Y., Martens, JH., O'Sullivan, RJ., Fodor, BD., Yonezawa, M., Peters, AH., Jenuwein, T. (2006)

The role of histone modifications in epigenetic transitions during normal and perturbed development.

Ernst Schering Res Found Workshop. (57):1-27
Jones, DH., Nakashima, T., Sanchez, OH., Kozieradzki, I., Komarova, SV., Sarosi, I., Morony, S., Rubin, E., Sarao, R., Hojilla, CV., Komnenovic, V., Kong, YY., Schreiber, M., Dixon, SJ., Sims, SM., Khokha, R., Wada, T., Penninger, JM. (2006)

Regulation of cancer cell migration and bone metastasis by RANKL.

Nature. 440(7084):692-6
Delogu, A., Schebesta, A., Sun, Q., Aschenbrenner, K., Perlot, T., Busslinger, M. (2006)

Gene repression by Pax5 in B cells is essential for blood cell homeostasis and is reversed in plasma cells.

Immunity. 24(3):269-81
Berdnik, D., Chihara, T., Couto, A., Luo, L. (2006)

Wiring stability of the adult Drosophila olfactory circuit after lesion.

J Neurosci. 26(13):3367-76
Tagoh, H., Ingram, R., Wilson, N., Salvagiotto, G., Warren, AJ., Clarke, D., Busslinger, M., Bonifer, C. (2006)

The mechanism of repression of the myeloid-specific c-fms gene by Pax5 during B lineage restriction.

EMBO J. 25(5):1070-80
Wagner, B., Natarajan, A., Grünaug, S., Kroismayr, R., Wagner, EF., Sibilia, M. (2006)

Neuronal survival depends on EGFR signaling in cortical but not midbrain astrocytes.

EMBO J. 25(4):752-62
Brankatschk, M., Dickson, BJ. (2006)

Netrins guide Drosophila commissural axons at short range.

Nat Neurosci. 9(2):188-94
Vishnu, S., Hertenstein, A., Betschinger, J., Knoblich, JA., Gert de Couet, H., Fischbach, KF. (2006)

The adaptor protein X11Lalpha/Dmint1 interacts with the PDZ-binding domain of the cell recognition protein Rst in Drosophila.

Dev Biol. 289(2):296-307
Hizlan, D., Mishima, M., Tittmann, P., Gross, H., Glotzer, M., Hoenger, A. (2006)

Structural analysis of the ZEN-4/CeMKLP1 motor domain and its interaction with microtubules.

J Struct Biol. 153(1):73-84
Yu, JY., Dickson, BJ. (2006)

Sexual behaviour: do a few dead neurons make the difference?

Curr Biol. 16(1):R23-5
Kraft, C., Gmachl, M., Peters, JM. (2006)

Methods to measure ubiquitin-dependent proteolysis mediated by the anaphase-promoting complex.

Methods. 38(1):39-51
Allis, D., Jenuwein, T., Reinberg, D. (Editors), assisted by Caparros, M.L. (2006)

Epigenetics

Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York..
Resch, GP., Small, JV., Goldie, KN. (2006)

Electron Microscopy of Extracted Cytoskeletons: Negative Staining, Cryoelectron Microscopy and Correlation with Light Microscopy.

Cell Biology - A Laboratory Handbook (J. E. Celis, ed.).
Hartmann, C. (2006)

Bone and Cartilage.

Encyclopedic Reference of Genomics and Proteomics in Molecular Medicine (Ganten, Ruckpaul, eds.). :155-9
Busslinger, M., Tarakhovsky, A. (2006)

Epigenetic control of lymphopoiesis.

In Epigenetics (Allis, Jenuwein, Reinberg, eds.); Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.. :397-414
Jenuwein T., Almouzni G., Avner P. (2006)

Epigenom

BIOFUTUR. (268):67-69
De la Fuente van Bentema S., Roitinger E., Anratherc D., Csaszarc E., Hirt H. (2006)

Phosphoproteomics as a tool to unravel plant regulatory mechanisms

Physiologia Plantarum. 126(1):110-119
Yüce, O., Piekny, A., Glotzer, M. (2005)

An ECT2-centralspindlin complex regulates the localization and function of RhoA.

J Cell Biol. 170(4):571-82
Giménez-Abián, JF., Díaz-Martínez, LA., Waizenegger, IC., Giménez-Martín, G., Clarke, DJ. (2005)

Separase is required at multiple pre-anaphase cell cycle stages in human cells.

Cell Cycle. 4(11):1576-84
Vaur, S., Cubizolles, F., Plane, G., Genier, S., Rabitsch, PK., Gregan, J., Nasmyth, K., Vanoosthuyse, V., Hardwick, KG., Javerzat, JP. (2005)

Control of Shugoshin function during fission-yeast meiosis.

Curr Biol. 15(24):2263-70
Maurer-Stroh, S., Eisenhaber, F. (2005)

Refinement and prediction of protein prenylation motifs.

Genome Biol. 6(6):R55
Hackl, H., Burkard, TR., Sturn, A., Rubio, R., Schleiffer, A., Tian, S., Quackenbush, J., Eisenhaber, F., Trajanoski, Z. (2005)

Molecular processes during fat cell development revealed by gene expression profiling and functional annotation.

Genome Biol. 6(13):R108
Grebien, F., Dolznig, H., Beug, H., Mullner, EW. (2005)

Cell size control: new evidence for a general mechanism.

Cell Cycle. 4(3):418-21
Gregan, J., Rabitsch, PK., Sakem, B., Csutak, O., Latypov, V., Lehmann, E., Kohli, J., Nasmyth, K. (2005)

Novel genes required for meiotic chromosome segregation are identified by a high-throughput knockout screen in fission yeast.

Curr Biol. 15(18):1663-9
Köller, M., Hayer, S., Redlich, K., Ricci, R., David, JP., Steiner, G., Smolen, JS., Wagner, EF., Schett, G. (2005)

JNK1 is not essential for TNF-mediated joint disease.

Arthritis Res Ther. 7(1):R166-73
Bhalerao, S., Berdnik, D., Török, T., Knoblich, JA. (2005)

Localization-dependent and -independent roles of numb contribute to cell-fate specification in Drosophila.

Curr Biol. 15(17):1583-90
Mercader, N., Tanaka, EM., Torres, M. (2005)

Proximodistal identity during vertebrate limb regeneration is regulated by Meis homeodomain proteins.

Development. 132(18):4131-42
McGuinness, BE., Hirota, T., Kudo, NR., Peters, JM., Nasmyth, K. (2005)

Shugoshin prevents dissociation of cohesin from centromeres during mitosis in vertebrate cells.

PLoS Biol. 3(3):e86
Hauf, S., Roitinger, E., Koch, B., Dittrich, CM., Mechtler, K., Peters, JM. (2005)

Dissociation of cohesin from chromosome arms and loss of arm cohesion during early mitosis depends on phosphorylation of SA2.

PLoS Biol. 3(3):e69
Dube, P., Herzog, F., Gieffers, C., Sander, B., Riedel, D., Müller, SA., Engel, A., Peters, JM., Stark, H. (2005)

Localization of the coactivator Cdh1 and the cullin subunit Apc2 in a cryo-electron microscopy model of vertebrate APC/C.

Mol Cell. 20(6):867-79
Vietor, I., Kurzbauer, R., Brosch, G., Huber, LA. (2005)

TIS7 regulation of the beta-catenin/Tcf-4 target gene osteopontin (OPN) is histone deacetylase-dependent.

J Biol Chem. 280(48):39795-801
Leksa, V., Godar, S., Schiller, HB., Fuertbauer, E., Muhammad, A., Slezakova, K., Horejsi, V., Steinlein, P., Weidle, UH., Binder, BR., Stockinger, H. (2005)

TGF-beta-induced apoptosis in endothelial cells mediated by M6P/IGFII-R and mini-plasminogen.

J Cell Sci. 118(Pt 19):4577-86
Novatchkova, M., Bachmair, A., Eisenhaber, B., Eisenhaber, F. (2005)

Proteins with two SUMO-like domains in chromatin-associated complexes: the RENi (Rad60-Esc2-NIP45) family.

BMC Bioinformatics. 6:22
Pilat, S., Carotta, S., Schiedlmeier, B., Kamino, K., Mairhofer, A., Will, E., Modlich, U., Steinlein, P., Ostertag, W., Baum, C., Beug, H., Klump, H. (2005)

HOXB4 enforces equivalent fates of ES-cell-derived and adult hematopoietic cells.

Proc Natl Acad Sci U S A. 102(34):12101-6
Hirota, T., Lipp, JJ., Toh, BH., Peters, JM. (2005)

Histone H3 serine 10 phosphorylation by Aurora B causes HP1 dissociation from heterochromatin.

Nature. 438(7071):1176-80
Zigman, M., Cayouette, M., Charalambous, C., Schleiffer, A., Hoeller, O., Dunican, D., McCudden, CR., Firnberg, N., Barres, BA., Siderovski, DP., Knoblich, JA. (2005)

Mammalian inscuteable regulates spindle orientation and cell fate in the developing retina.

Neuron. 48(4):539-45
Bao, S., Miyoshi, N., Okamoto, I., Jenuwein, T., Heard, E., Azim Surani, M. (2005)

Initiation of epigenetic reprogramming of the X chromosome in somatic nuclei transplanted to a mouse oocyte.

EMBO Rep. 6(8):748-54
Wagner, EF., Eferl, R. (2005)

Fos/AP-1 proteins in bone and the immune system.

Immunol Rev. 208:126-40
Asagiri, M., Sato, K., Usami, T., Ochi, S., Nishina, H., Yoshida, H., Morita, I., Wagner, EF., Mak, TW., Serfling, E., Takayanagi, H. (2005)

Autoamplification of NFATc1 expression determines its essential role in bone homeostasis.

J Exp Med. 202(9):1261-9
Herzog, F., Peters, JM. (2005)

Large-scale purification of the vertebrate anaphase-promoting complex/cyclosome.

Methods Enzymol. 398:175-95
Grillari, J., Ajuh, P., Stadler, G., Löscher, M., Voglauer, R., Ernst, W., Chusainow, J., Eisenhaber, F., Pokar, M., Fortschegger, K., Grey, M., Lamond, AI., Katinger, H. (2005)

SNEV is an evolutionarily conserved splicing factor whose oligomerization is necessary for spliceosome assembly.

Nucleic Acids Res. 33(21):6868-83
Huber, MA., Kraut, N., Beug, H. (2005)

Molecular requirements for epithelial-mesenchymal transition during tumor progression.

Curr Opin Cell Biol. 17(5):548-58
Kinoshita, K., Noetzel, TL., Pelletier, L., Mechtler, K., Drechsel, DN., Schwager, A., Lee, M., Raff, JW., Hyman, AA. (2005)

Aurora A phosphorylation of TACC3/maskin is required for centrosome-dependent microtubule assembly in mitosis.

J Cell Biol. 170(7):1047-55
Corvinus, FM., Orth, C., Moriggl, R., Tsareva, SA., Wagner, S., Pfitzner, EB., Baus, D., Kaufmann, R., Huber, LA., Zatloukal, K., Beug, H., Ohlschläger, P., Schütz, A., Halbhuber, KJ., Friedrich, K. (2005)

Persistent STAT3 activation in colon cancer is associated with enhanced cell proliferation and tumor growth.

Neoplasia. 7(6):545-55
Ivanov, D., Nasmyth, K. (2005)

A topological interaction between cohesin rings and a circular minichromosome.

Cell. 122(6):849-60
Koyanagi, M., Baguet, A., Martens, J., Margueron, R., Jenuwein, T., Bix, M. (2005)

EZH2 and histone 3 trimethyl lysine 27 associated with Il4 and Il13 gene silencing in Th1 cells.

J Biol Chem. 280(36):31470-7
Emery, G., Hutterer, A., Berdnik, D., Mayer, B., Wirtz-Peitz, F., Gaitan, MG., Knoblich, JA. (2005)

Asymmetric Rab 11 endosomes regulate delta recycling and specify cell fate in the Drosophila nervous system.

Cell. 122(5):763-73
Fu, L., Patel, MS., Bradley, A., Wagner, EF., Karsenty, G. (2005)

The molecular clock mediates leptin-regulated bone formation.

Cell. 122(5):803-15
Peters, JM. (2005)

Cyclin degradation: don't mes(s) with meiosis.

Curr Biol. 15(12):R461-3
Klein, L., Emmerich, J., d'Cruz, L., Aschenbrenner, K., Khazaie, K. (2005)

Selection and behavior of CD4+ CD25+ T cells in vivo: lessons from T cell receptor transgenic models.

Curr Top Microbiol Immunol. 293:73-87
O'Connor, E., Eisenhaber, B., Dalley, J., Wang, T., Missen, C., Bulleid, N., Bishop, PN., Trump, D. (2005)

Species specific membrane anchoring of nyctalopin, a small leucine-rich repeat protein.

Hum Mol Genet. 14(13):1877-87
Jerkovic, L., Voegele, AF., Chwatal, S., Kronenberg, F., Radcliffe, CM., Wormald, MR., Lobentanz, EM., Ezeh, B., Eller, P., Dejori, N., Dieplinger, B., Lottspeich, F., Sattler, W., Uhr, M., Mechtler, K., Dwek, RA., Rudd, PM., Baier, G., Dieplinger, H. (2005)

Afamin is a novel human vitamin E-binding glycoprotein characterization and in vitro expression.

J Proteome Res. 4(3):889-99
Gillardon, F., Steinlein, P., Bürger, E., Hildebrandt, T., Gerner, C. (2005)

Phosphoproteome and transcriptome analysis of the neuronal response to a CDK5 inhibitor.

Proteomics. 5(5):1299-307
Nasmyth, K., Haering, CH. (2005)

The structure and function of SMC and kleisin complexes.

Annu Rev Biochem. 74:595-648
Zenz, R., Eferl, R., Kenner, L., Florin, L., Hummerich, L., Mehic, D., Scheuch, H., Angel, P., Tschachler, E., Wagner, EF. (2005)

Psoriasis-like skin disease and arthritis caused by inducible epidermal deletion of Jun proteins.

Nature. 437(7057):369-75
Kitzing, K., Fitzpatrick, TB., Wilken, C., Sawa, J., Bourenkov, GP., Macheroux, P., Clausen, T. (2005)

The 1.3 A crystal structure of the flavoprotein YqjM reveals a novel class of Old Yellow Enzymes.

J Biol Chem. 280(30):27904-13
Groll, M., Bochtler, M., Brandstetter, H., Clausen, T., Huber, R. (2005)

Molecular machines for protein degradation.

Chembiochem. 6(2):222-56
Terme, M., Borg, C., Guilhot, F., Masurier, C., Flament, C., Wagner, EF., Caillat-Zucman, S., Bernheim, A., Turhan, AG., Caignard, A., Zitvogel, L. (2005)

BCR/ABL promotes dendritic cell-mediated natural killer cell activation.

Cancer Res. 65(14):6409-17
Bos, R., van Duikeren, S., van Hall, T., Kaaijk, P., Taubert, R., Kyewski, B., Klein, L., Melief, CJ., Offringa, R. (2005)

Expression of a natural tumor antigen by thymic epithelial cells impairs the tumor-protective CD4+ T-cell repertoire.

Cancer Res. 65(14):6443-9
Hamant, O., Golubovskaya, I., Meeley, R., Fiume, E., Timofejeva, L., Schleiffer, A., Nasmyth, K., Cande, WZ. (2005)

A REC8-dependent plant Shugoshin is required for maintenance of centromeric cohesion during meiosis and has no mitotic functions.

Curr Biol. 15(10):948-54
Braig, M., Lee, S., Loddenkemper, C., Rudolph, C., Peters, AH., Schlegelberger, B., Stein, H., Dörken, B., Jenuwein, T., Schmitt, CA. (2005)

Oncogene-induced senescence as an initial barrier in lymphoma development.

Nature. 436(7051):660-5
Guse, A., Mishima, M., Glotzer, M. (2005)

Phosphorylation of ZEN-4/MKLP1 by aurora B regulates completion of cytokinesis.

Curr Biol. 15(8):778-86
Novatchkova, M., Wildpaner, M., Schweizer, D., Eisenhaber, F. (2005)

PhyloDome--visualization of taxonomic distributions of domains occurring in eukaryote protein sequence sets.

Nucleic Acids Res. 33(Web Server issue):W121-5
Bouchard, M., Grote, D., Craven, SE., Sun, Q., Steinlein, P., Busslinger, M. (2005)

Identification of Pax2-regulated genes by expression profiling of the mid-hindbrain organizer region.

Development. 132(11):2633-43
Kraft, C., Vodermaier, HC., Maurer-Stroh, S., Eisenhaber, F., Peters, JM. (2005)

The WD40 propeller domain of Cdh1 functions as a destruction box receptor for APC/C substrates.

Mol Cell. 18(5):543-53
Drissen, R., von Lindern, M., Kolbus, A., Driegen, S., Steinlein, P., Beug, H., Grosveld, F., Philipsen, S. (2005)

The erythroid phenotype of EKLF-null mice: defects in hemoglobin metabolism and membrane stability.

Mol Cell Biol. 25(12):5205-14
Pelayo, R., Hirose, J., Huang, J., Garrett, KP., Delogu, A., Busslinger, M., Kincade, PW. (2005)

Derivation of 2 categories of plasmacytoid dendritic cells in murine bone marrow.

Blood. 105(11):4407-15
Ruocco, MG., Maeda, S., Park, JM., Lawrence, T., Hsu, LC., Cao, Y., Schett, G., Wagner, EF., Karin, M. (2005)

I{kappa}B kinase (IKK){beta}, but not IKK{alpha}, is a critical mediator of osteoclast survival and is required for inflammation-induced bone loss.

J Exp Med. 201(10):1677-87
Grau, S., Baldi, A., Bussani, R., Tian, X., Stefanescu, R., Przybylski, M., Richards, P., Jones, SA., Shridhar, V., Clausen, T., Ehrmann, M. (2005)

Implications of the serine protease HtrA1 in amyloid precursor protein processing.

Proc Natl Acad Sci U S A. 102(17):6021-6
Naumann, K., Fischer, A., Hofmann, I., Krauss, V., Phalke, S., Irmler, K., Hause, G., Aurich, AC., Dorn, R., Jenuwein, T., Reuter, G. (2005)

Pivotal role of AtSUVH2 in heterochromatic histone methylation and gene silencing in Arabidopsis.

EMBO J. 24(7):1418-29
Yanagida, M., Nasmyth, K. (2005)

Introduction: dissection and simplification of chromosome segregation.

Philos Trans R Soc Lond B Biol Sci. 360(1455):481
Nasmyth, K. (2005)

How might cohesin hold sister chromatids together?

Philos Trans R Soc Lond B Biol Sci. 360(1455):483-96
Hill, TP., Später, D., Taketo, MM., Birchmeier, W., Hartmann, C. (2005)

Canonical Wnt/beta-catenin signaling prevents osteoblasts from differentiating into chondrocytes.

Dev Cell. 8(5):727-38
Fischer, AN., Herrera, B., Mikula, M., Proell, V., Fuchs, E., Gotzmann, J., Schulte-Hermann, R., Beug, H., Mikulits, W. (2005)

Integration of Ras subeffector signaling in TGF-beta mediated late stage hepatocarcinogenesis.

Carcinogenesis. 26(5):931-42
Gregan, J. (2005)

Conditional alleles, inteins and degrons.

Nat Biotechnol. 23(1):18
Echeverri, K., Tanaka, EM. (2005)

Proximodistal patterning during limb regeneration.

Dev Biol. 279(2):391-401
Hayer, S., Steiner, G., Görtz, B., Reiter, E., Tohidast-Akrad, M., Amling, M., Hoffmann, O., Redlich, K., Zwerina, J., Skriner, K., Hilberg, F., Wagner, EF., Smolen, JS., Schett, G. (2005)

CD44 is a determinant of inflammatory bone loss.

J Exp Med. 201(6):903-14
Gonzalo, S., García-Cao, M., Fraga, MF., Schotta, G., Peters, AH., Cotter, SE., Eguía, R., Dean, DC., Esteller, M., Jenuwein, T., Blasco, MA. (2005)

Role of the RB1 family in stabilizing histone methylation at constitutive heterochromatin.

Nat Cell Biol. 7(4):420-8
Nasmyth, K. (2005)

How do so few control so many?

Cell. 120(6):739-46
Angelin-Duclos, C., Domenget, C., Kolbus, A., Beug, H., Jurdic, P., Samarut, J. (2005)

Thyroid hormone T3 acting through the thyroid hormone alpha receptor is necessary for implementation of erythropoiesis in the neonatal spleen environment in the mouse.

Development. 132(5):925-34
David, JP., Mehic, D., Bakiri, L., Schilling, AF., Mandic, V., Priemel, M., Idarraga, MH., Reschke, MO., Hoffmann, O., Amling, M., Wagner, EF. (2005)

Essential role of RSK2 in c-Fos-dependent osteosarcoma development.

J Clin Invest. 115(3):664-72
Brecht, S., Kirchhof, R., Chromik, A., Willesen, M., Nicolaus, T., Raivich, G., Wessig, J., Waetzig, V., Goetz, M., Claussen, M., Pearse, D., Kuan, CY., Vaudano, E., Behrens, A., Wagner, E., Flavell, RA., Davis, RJ., Herdegen, T. (2005)

Specific pathophysiological functions of JNK isoforms in the brain.

Eur J Neurosci. 21(2):363-77
Fraga, MF., Ballestar, E., Villar-Garea, A., Boix-Chornet, M., Espada, J., Schotta, G., Bonaldi, T., Haydon, C., Ropero, S., Petrie, K., Iyer, NG., Pérez-Rosado, A., Calvo, E., Lopez, JA., Cano, A., Calasanz, MJ., Colomer, D., Piris, MA., Ahn, N., Imhof, A., Caldas, C., Jenuwein, T., Esteller, M. (2005)

Loss of acetylation at Lys16 and trimethylation at Lys20 of histone H4 is a common hallmark of human cancer.

Nat Genet. 37(4):391-400
Ardouin, L., Rolink, AG., Mura, AM., Gommeaux, J., Melchers, F., Busslinger, M., Malissen, M., Malissen, B. (2005)

Rapid in vivo analysis of mutant forms of the LAT adaptor using Pax5-Lat double-deficient pro-B cells.

Eur J Immunol. 35(3):977-86
Martens, JH., O'Sullivan, RJ., Braunschweig, U., Opravil, S., Radolf, M., Steinlein, P., Jenuwein, T. (2005)

The profile of repeat-associated histone lysine methylation states in the mouse epigenome.

EMBO J. 24(4):800-12
Eger, A., Aigner, K., Sonderegger, S., Dampier, B., Oehler, S., Schreiber, M., Berx, G., Cano, A., Beug, H., Foisner, R. (2005)

DeltaEF1 is a transcriptional repressor of E-cadherin and regulates epithelial plasticity in breast cancer cells.

Oncogene. 24(14):2375-85
Ameyar-Zazoua, M., Wisniewska, MB., Bakiri, L., Wagner, EF., Yaniv, M., Weitzman, JB. (2005)

AP-1 dimers regulate transcription of the p14/p19ARF tumor suppressor gene.

Oncogene. 24(14):2298-306
Maschler, S., Wirl, G., Spring, H., Bredow, DV., Sordat, I., Beug, H., Reichmann, E. (2005)

Tumor cell invasiveness correlates with changes in integrin expression and localization.

Oncogene. 24(12):2032-41
Betschinger, J., Eisenhaber, F., Knoblich, JA. (2005)

Phosphorylation-induced autoinhibition regulates the cytoskeletal protein Lethal (2) giant larvae.

Curr Biol. 15(3):276-82
Ricci, R., Eriksson, U., Oudit, GY., Eferl, R., Akhmedov, A., Sumara, I., Sumara, G., Kassiri, Z., David, JP., Bakiri, L., Sasse, B., Idarraga, MH., Rath, M., Kurz, D., Theussl, HC., Perriard, JC., Backx, P., Penninger, JM., Wagner, EF. (2005)

Distinct functions of junD in cardiac hypertrophy and heart failure.

Genes Dev. 19(2):208-13
Glotzer, M. (2005)

The molecular requirements for cytokinesis.

Science. 307(5716):1735-9
Kanellopoulou, C., Muljo, SA., Kung, AL., Ganesan, S., Drapkin, R., Jenuwein, T., Livingston, DM., Rajewsky, K. (2005)

Dicer-deficient mouse embryonic stem cells are defective in differentiation and centromeric silencing.

Genes Dev. 19(4):489-501
da Silva, AV., Pezerico, SB., de Lima, VY., d'Arc Moretti, L., Pinheiro, JP., Tanaka, EM., Ribeiro, MG., Langoni, H. (2005)

Genotyping of Toxoplasma gondii strains isolated from dogs with neurological signs.

Vet Parasitol. 127(1):23-7
Dolznig, H., Kolbus, A., Leberbauer, C., Schmidt, U., Deiner, EM., Müllner, EW., Beug, H. (2005)

Expansion and differentiation of immature mouse and human hematopoietic progenitors.

Methods Mol Med. 105:323-44
Moriggl, R., Sexl, V., Kenner, L., Duntsch, C., Stangl, K., Gingras, S., Hoffmeyer, A., Bauer, A., Piekorz, R., Wang, D., Bunting, KD., Wagner, EF., Sonneck, K., Valent, P., Ihle, JN., Beug, H. (2005)

Stat5 tetramer formation is associated with leukemogenesis.

Cancer Cell. 7(1):87-99
Zarnescu, DC., Jin, P., Betschinger, J., Nakamoto, M., Wang, Y., Dockendorff, TC., Feng, Y., Jongens, TA., Sisson, JC., Knoblich, JA., Warren, ST., Moses, K. (2005)

Fragile X protein functions with lgl and the par complex in flies and mice.

Dev Cell. 8(1):43-52
Roldán, E., Fuxa, M., Chong, W., Martinez, D., Novatchkova, M., Busslinger, M., Skok, JA. (2005)

Locus 'decontraction' and centromeric recruitment contribute to allelic exclusion of the immunoglobulin heavy-chain gene.

Nat Immunol. 6(1):31-41
Mehic, D., Bakiri, L., Ghannadan, M., Wagner, EF., Tschachler, E. (2005)

Fos and jun proteins are specifically expressed during differentiation of human keratinocytes.

J Invest Dermatol. 124(1):212-20
Hasselblatt, P., Hockenjos, B., Thoma, C., Blum, HE., Offensperger, WB. (2005)

Translation of stable hepadnaviral mRNA cleavage fragments induced by the action of phosphorothioate-modified antisense oligodeoxynucleotides.

Nucleic Acids Res. 33(1):114-25
Leberbauer, C., Boulmé, F., Unfried, G., Huber, J., Beug, H., Müllner, EW. (2005)

Different steroids co-regulate long-term expansion versus terminal differentiation in primary human erythroid progenitors.

Blood. 105(1):85-94
Eisenhaber, B., Eisenhaber, F. (2005)

Sequence complexity of proteins and its significance in annotation.

"Bioinformatics" in the Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics (Subramaniam, S., ed.).
Eisenhaber F. (2005)

Prediction of the Protein Function: Two Basic Concepts and One Practical Recipe. Chapter 3 in

Georgetown: Landes Biosciences and Eurekah.com. :38-53
Eisenhaber F. (2005)

Discovering Biomolecular Mechanisms with Computational Biology.

Georgetown: Landes Biosciences and Eurekah.com.
Kohlmaier, A., Savarese, F., Lachner, M., Martens, J., Jenuwein, T., Wutz, A. (2004)

A chromosomal memory triggered by Xist regulates histone methylation in X inactivation.

PLoS Biol. 2(7):E171
Sabapathy, K., Wagner, EF. (2004)

JNK2: a negative regulator of cellular proliferation.

Cell Cycle. 3(12):1520-3
Huber, MA., Beug, H., Wirth, T. (2004)

Epithelial-mesenchymal transition: NF-kappaB takes center stage.

Cell Cycle. 3(12):1477-80
Neuberger, G., Kunze, M., Eisenhaber, F., Berger, J., Hartig, A., Brocard, C. (2004)

Hidden localization motifs: naturally occurring peroxisomal targeting signals in non-peroxisomal proteins.

Genome Biol. 5(12):R97
Lachner, M., Sengupta, R., Schotta, G., Jenuwein, T. (2004)

Trilogies of histone lysine methylation as epigenetic landmarks of the eukaryotic genome.

Cold Spring Harb Symp Quant Biol. 69:209-18
Mitulović, G., Stingl, C., Smoluch, M., Swart, R., Chervet, JP., Steinmacher, I., Gerner, C., Mechtler, K. (2004)

Automated, on-line two-dimensional nano liquid chromatography tandem mass spectrometry for rapid analysis of complex protein digests.

Proteomics. 4(9):2545-57
Hirota, T., Gerlich, D., Koch, B., Ellenberg, J., Peters, JM. (2004)

Distinct functions of condensin I and II in mitotic chromosome assembly.

J Cell Sci. 117(Pt 26):6435-45
Eferl, R., Hoebertz, A., Schilling, AF., Rath, M., Karreth, F., Kenner, L., Amling, M., Wagner, EF. (2004)

The Fos-related antigen Fra-1 is an activator of bone matrix formation.

EMBO J. 23(14):2789-99
Meixner, A., Karreth, F., Kenner, L., Wagner, EF. (2004)

JunD regulates lymphocyte proliferation and T helper cell cytokine expression.

EMBO J. 23(6):1325-35
Baxter, J., Sauer, S., Peters, A., John, R., Williams, R., Caparros, ML., Arney, K., Otte, A., Jenuwein, T., Merkenschlager, M., Fisher, AG. (2004)

Histone hypomethylation is an indicator of epigenetic plasticity in quiescent lymphocytes.

EMBO J. 23(22):4462-72
Habermann, B., Bebin, AG., Herklotz, S., Volkmer, M., Eckelt, K., Pehlke, K., Epperlein, HH., Schackert, HK., Wiebe, G., Tanaka, EM. (2004)

An Ambystoma mexicanum EST sequencing project: analysis of 17,352 expressed sequence tags from embryonic and regenerating blastema cDNA libraries.

Genome Biol. 5(9):R67
Novatchkova, M., Budhiraja, R., Coupland, G., Eisenhaber, F., Bachmair, A. (2004)

SUMO conjugation in plants.

Planta. 220(1):1-8
Katis, VL., Matos, J., Mori, S., Shirahige, K., Zachariae, W., Nasmyth, K. (2004)

Spo13 facilitates monopolin recruitment to kinetochores and regulates maintenance of centromeric cohesion during yeast meiosis.

Curr Biol. 14(24):2183-96
Petronczki, M., Chwalla, B., Siomos, MF., Yokobayashi, S., Helmhart, W., Deutschbauer, AM., Davis, RW., Watanabe, Y., Nasmyth, K. (2004)

Sister-chromatid cohesion mediated by the alternative RF-CCtf18/Dcc1/Ctf8, the helicase Chl1 and the polymerase-alpha-associated protein Ctf4 is essential for chromatid disjunction during meiosis II.

J Cell Sci. 117(Pt 16):3547-59
Heidmann, D., Horn, S., Heidmann, S., Schleiffer, A., Nasmyth, K., Lehner, CF. (2004)

The Drosophila meiotic kleisin C(2)M functions before the meiotic divisions.

Chromosoma. 113(4):177-87
Ebert, A., Schotta, G., Lein, S., Kubicek, S., Krauss, V., Jenuwein, T., Reuter, G. (2004)

Su(var) genes regulate the balance between euchromatin and heterochromatin in Drosophila.

Genes Dev. 18(23):2973-83
Gass, P., Fleischmann, A., Hvalby, O., Jensen, V., Zacher, C., Strekalova, T., Kvello, A., Wagner, EF., Sprengel, R. (2004)

Mice with a fra-1 knock-in into the c-fos locus show impaired spatial but regular contextual learning and normal LTP.

Brain Res Mol Brain Res. 130(1-2):16-22
Roschger, P., Matsuo, K., Misof, BM., Tesch, W., Jochum, W., Wagner, EF., Fratzl, P., Klaushofer, K. (2004)

Normal mineralization and nanostructure of sclerotic bone in mice overexpressing Fra-1.

Bone. 34(5):776-82
Ehrmann, M., Clausen, T. (2004)

Proteolysis as a regulatory mechanism.

Annu Rev Genet. 38:709-24
Lindroth, AM., Shultis, D., Jasencakova, Z., Fuchs, J., Johnson, L., Schubert, D., Patnaik, D., Pradhan, S., Goodrich, J., Schubert, I., Jenuwein, T., Khorasanizadeh, S., Jacobsen, SE. (2004)

Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3.

EMBO J. 23(21):4286-96
Tagoh, H., Schebesta, A., Lefevre, P., Wilson, N., Hume, D., Busslinger, M., Bonifer, C. (2004)

Epigenetic silencing of the c-fms locus during B-lymphopoiesis occurs in discrete steps and is reversible.

EMBO J. 23(21):4275-85
Görtz, B., Hayer, S., Redlich, K., Zwerina, J., Tohidast-Akrad, M., Tuerk, B., Hartmann, C., Kollias, G., Steiner, G., Smolen, JS., Schett, G. (2004)

Arthritis induces lymphocytic bone marrow inflammation and endosteal bone formation.

J Bone Miner Res. 19(6):990-8
Lorenz, A., Wells, JL., Pryce, DW., Novatchkova, M., Eisenhaber, F., McFarlane, RJ., Loidl, J. (2004)

S. pombe meiotic linear elements contain proteins related to synaptonemal complex components.

J Cell Sci. 117(Pt 15):3343-51
Vodermaier, HC. (2004)

APC/C and SCF: controlling each other and the cell cycle.

Curr Biol. 14(18):R787-96
Balasubramanian, MK., Bi, E., Glotzer, M. (2004)

Comparative analysis of cytokinesis in budding yeast, fission yeast and animal cells.

Curr Biol. 14(18):R806-18
Kubicek, S., Jenuwein, T. (2004)

A crack in histone lysine methylation.

Cell. 119(7):903-6
Sumara, I., Giménez-Abián, JF., Gerlich, D., Hirota, T., Kraft, C., de la Torre, C., Ellenberg, J., Peters, JM. (2004)

Roles of polo-like kinase 1 in the assembly of functional mitotic spindles.

Curr Biol. 14(19):1712-22
Máthé, E., Kraft, C., Giet, R., Deák, P., Peters, JM., Glover, DM. (2004)

The E2-C vihar is required for the correct spatiotemporal proteolysis of cyclin B and itself undergoes cyclical degradation.

Curr Biol. 14(19):1723-33
Fitzpatrick, TB., Auweter, S., Kitzing, K., Clausen, T., Amrhein, N., Macheroux, P. (2004)

Structural and functional impairment of an Old Yellow Enzyme homologue upon affinity tag incorporation.

Protein Expr Purif. 36(2):280-91
van den Akker, E., van Dijk, TB., Schmidt, U., Felida, L., Beug, H., Löwenberg, B., von Lindern, M. (2004)

The Btk inhibitor LFM-A13 is a potent inhibitor of Jak2 kinase activity.

Biol Chem. 385(5):409-13
Karreth, F., Hoebertz, A., Scheuch, H., Eferl, R., Wagner, EF. (2004)

The AP1 transcription factor Fra2 is required for efficient cartilage development.

Development. 131(22):5717-25
Higgins, DF., Biju, MP., Akai, Y., Wutz, A., Johnson, RS., Haase, VH. (2004)

Hypoxic induction of Ctgf is directly mediated by Hif-1.

Am J Physiol Renal Physiol. 287(6):F1223-32
Vodermaier, HC., Peters, JM. (2004)

APC activators caught by their tails?

Cell Cycle. 3(3):265-6
Zierhut, B., Mechtler, K., Gartner, W., Daneva, T., Base, W., Weissel, M., Niederle, B., Wagner, L. (2004)

Heat shock protein 70 (Hsp70) subtype expression in neuroendocrine tissue and identification of a neuroendocrine tumour-specific Hsp70 truncation.

Endocr Relat Cancer. 11(2):377-89
Ricci, R., Sumara, G., Sumara, I., Rozenberg, I., Kurrer, M., Akhmedov, A., Hersberger, M., Eriksson, U., Eberli, FR., Becher, B., Borén, J., Chen, M., Cybulsky, MI., Moore, KJ., Freeman, MW., Wagner, EF., Matter, CM., Lüscher, TF. (2004)

Requirement of JNK2 for scavenger receptor A-mediated foam cell formation in atherogenesis.

Science. 306(5701):1558-61
Passegué, E., Wagner, EF., Weissman, IL. (2004)

JunB deficiency leads to a myeloproliferative disorder arising from hematopoietic stem cells.

Cell. 119(3):431-43
Zimmermann, R., Strauss, JG., Haemmerle, G., Schoiswohl, G., Birner-Gruenberger, R., Riederer, M., Lass, A., Neuberger, G., Eisenhaber, F., Hermetter, A., Zechner, R. (2004)

Fat mobilization in adipose tissue is promoted by adipose triglyceride lipase.

Science. 306(5700):1383-6
Linderson, Y., Eberhard, D., Malin, S., Johansson, A., Busslinger, M., Pettersson, S. (2004)

Corecruitment of the Grg4 repressor by PU.1 is critical for Pax5-mediated repression of B-cell-specific genes.

EMBO Rep. 5(3):291-6
Betschinger, J., Knoblich, JA. (2004)

Dare to be different: asymmetric cell division in Drosophila, C. elegans and vertebrates.

Curr Biol. 14(16):R674-85
Silverman, J., Takai, H., Buonomo, SB., Eisenhaber, F., de Lange, T. (2004)

Human Rif1, ortholog of a yeast telomeric protein, is regulated by ATM and 53BP1 and functions in the S-phase checkpoint.

Genes Dev. 18(17):2108-19
Jackson, JP., Johnson, L., Jasencakova, Z., Zhang, X., PerezBurgos, L., Singh, PB., Cheng, X., Schubert, I., Jenuwein, T., Jacobsen, SE. (2004)

Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana.

Chromosoma. 112(6):308-15
Eisenhaber, B., Eisenhaber, F., Maurer-Stroh, S., Neuberger, G. (2004)

Prediction of sequence signals for lipid post-translational modifications: insights from case studies.

Proteomics. 4(6):1614-25
Sabapathy, K., Hochedlinger, K., Nam, SY., Bauer, A., Karin, M., Wagner, EF. (2004)

Distinct roles for JNK1 and JNK2 in regulating JNK activity and c-Jun-dependent cell proliferation.

Mol Cell. 15(5):713-25
Haering, CH., Schoffnegger, D., Nishino, T., Helmhart, W., Nasmyth, K., Löwe, J. (2004)

Structure and stability of cohesin's Smc1-kleisin interaction.

Mol Cell. 15(6):951-64
Bouchard, M., Souabni, A., Busslinger, M. (2004)

Tissue-specific expression of cre recombinase from the Pax8 locus.

Genesis. 38(3):105-9
Joosten, M., Blázquez-Domingo, M., Lindeboom, F., Boulmé, F., Van Hoven-Beijen, A., Habermann, B., Löwenberg, B., Beug, H., Müllner, EW., Delwel, R., Von Lindern, M. (2004)

Translational control of putative protooncogene Nm23-M2 by cytokines via phosphoinositide 3-kinase signaling.

J Biol Chem. 279(37):38169-76
Höflinger, S., Kesavan, K., Fuxa, M., Hutter, C., Heavey, B., Radtke, F., Busslinger, M. (2004)

Analysis of Notch1 function by in vitro T cell differentiation of Pax5 mutant lymphoid progenitors.

J Immunol. 173(6):3935-44
Jantsch, V., Pasierbek, P., Mueller, MM., Schweizer, D., Jantsch, M., Loidl, J. (2004)

Targeted gene knockout reveals a role in meiotic recombination for ZHP-3, a Zip3-related protein in Caenorhabditis elegans.

Mol Cell Biol. 24(18):7998-8006
Riedel, CG., Gregan, J., Gruber, S., Nasmyth, K. (2004)

Is chromatin remodeling required to build sister-chromatid cohesion?

Trends Biochem Sci. 29(8):389-92
Maurer-Stroh, S., Gouda, M., Novatchkova, M., Schleiffer, A., Schneider, G., Sirota, FL., Wildpaner, M., Hayashi, N., Eisenhaber, F. (2004)

MYRbase: analysis of genome-wide glycine myristoylation enlarges the functional spectrum of eukaryotic myristoylated proteins.

Genome Biol. 5(3):R21
Carotta, S., Pilat, S., Mairhofer, A., Schmidt, U., Dolznig, H., Steinlein, P., Beug, H. (2004)

Directed differentiation and mass cultivation of pure erythroid progenitors from mouse embryonic stem cells.

Blood. 104(6):1873-80
Giménez-Abián, JF., Sumara, I., Hirota, T., Hauf, S., Gerlich, D., de la Torre, C., Ellenberg, J., Peters, JM. (2004)

Regulation of sister chromatid cohesion between chromosome arms.

Curr Biol. 14(13):1187-93
Dolznig, H., Grebien, F., Sauer, T., Beug, H., Müllner, EW. (2004)

Evidence for a size-sensing mechanism in animal cells.

Nat Cell Biol. 6(9):899-905
Acquaviva, C., Herzog, F., Kraft, C., Pines, J. (2004)

The anaphase promoting complex/cyclosome is recruited to centromeres by the spindle assembly checkpoint.

Nat Cell Biol. 6(9):892-8
Kenner, L., Hoebertz, A., Beil, FT., Beil, T., Keon, N., Karreth, F., Eferl, R., Scheuch, H., Szremska, A., Amling, M., Schorpp-Kistner, M., Angel, P., Wagner, EF. (2004)

Mice lacking JunB are osteopenic due to cell-autonomous osteoblast and osteoclast defects.

J Cell Biol. 164(4):613-23
Schmidt, U., van den Akker, E., Parren-van Amelsvoort, M., Litos, G., de Bruijn, M., Gutiérrez, L., Hendriks, RW., Ellmeier, W., Löwenberg, B., Beug, H., von Lindern, M. (2004)

Btk is required for an efficient response to erythropoietin and for SCF-controlled protection against TRAIL in erythroid progenitors.

J Exp Med. 199(6):785-95
Bakker, WJ., Blázquez-Domingo, M., Kolbus, A., Besooyen, J., Steinlein, P., Beug, H., Coffer, PJ., Löwenberg, B., von Lindern, M., van Dijk, TB. (2004)

FoxO3a regulates erythroid differentiation and induces BTG1, an activator of protein arginine methyl transferase 1.

J Cell Biol. 164(2):175-84
Glotzer, M. (2004)

Cleavage furrow positioning.

J Cell Biol. 164(3):347-51
Mishima, M., Pavicic, V., Grüneberg, U., Nigg, EA., Glotzer, M. (2004)

Cell cycle regulation of central spindle assembly.

Nature. 430(7002):908-13
Huber, MA., Azoitei, N., Baumann, B., Grünert, S., Sommer, A., Pehamberger, H., Kraut, N., Beug, H., Wirth, T. (2004)

NF-kappaB is essential for epithelial-mesenchymal transition and metastasis in a model of breast cancer progression.

J Clin Invest. 114(4):569-81
Terme, M., Tomasello, E., Maruyama, K., Crépineau, F., Chaput, N., Flament, C., Marolleau, JP., Angevin, E., Wagner, EF., Salomon, B., Lemonnier, FA., Wakasugi, H., Colonna, M., Vivier, E., Zitvogel, L. (2004)

IL-4 confers NK stimulatory capacity to murine dendritic cells: a signaling pathway involving KARAP/DAP12-triggering receptor expressed on myeloid cell 2 molecules.

J Immunol. 172(10):5957-66
Mandler, M., Neubüser, A. (2004)

FGF signaling is required for initiation of feather placode development.

Development. 131(14):3333-43
Hirota, T. (2004)

[Setting the stage for mitosis: kinase regulation of prophase].

Tanpakushitsu Kakusan Koso. 49(8):1183-94
Raivich, G., Bohatschek, M., Da Costa, C., Iwata, O., Galiano, M., Hristova, M., Nateri, AS., Makwana, M., Riera-Sans, L., Wolfer, DP., Lipp, HP., Aguzzi, A., Wagner, EF., Behrens, A. (2004)

The AP-1 transcription factor c-Jun is required for efficient axonal regeneration.

Neuron. 43(1):57-67
Kurzbauer, R., Teis, D., de Araujo, ME., Maurer-Stroh, S., Eisenhaber, F., Bourenkov, GP., Bartunik, HD., Hekman, M., Rapp, UR., Huber, LA., Clausen, T. (2004)

Crystal structure of the p14/MP1 scaffolding complex: how a twin couple attaches mitogen-activated protein kinase signaling to late endosomes.

Proc Natl Acad Sci U S A. 101(30):10984-9
Kubovcakova, L., Tybitanclova, K., Sabban, EL., Majzoub, J., Zorad, S., Vietor, I., Wagner, EF., Krizanova, O., Kvetnansky, R. (2004)

Catecholamine synthesizing enzymes and their modulation by immobilization stress in knockout mice.

Ann N Y Acad Sci. 1018:458-65
Nasmyth, K. (2004)

Changing places. Interview by Graham Tebb.

Curr Biol. 14(12):R452-3
Azzam, R., Chen, SL., Shou, W., Mah, AS., Alexandru, G., Nasmyth, K., Annan, RS., Carr, SA., Deshaies, RJ. (2004)

Phosphorylation by cyclin B-Cdk underlies release of mitotic exit activator Cdc14 from the nucleolus.

Science. 305(5683):516-9
Busslinger, M. (2004)

Transcriptional control of early B cell development.

Annu Rev Immunol. 22:55-79
Rossiter, H., Barresi, C., Pammer, J., Rendl, M., Haigh, J., Wagner, EF., Tschachler, E. (2004)

Loss of vascular endothelial growth factor a activity in murine epidermal keratinocytes delays wound healing and inhibits tumor formation.

Cancer Res. 64(10):3508-16
Hutterer, A., Betschinger, J., Petronczki, M., Knoblich, JA. (2004)

Sequential roles of Cdc42, Par-6, aPKC, and Lgl in the establishment of epithelial polarity during Drosophila embryogenesis.

Dev Cell. 6(6):845-54
Bourbon, HM., Aguilera, A., Ansari, AZ., Asturias, FJ., Berk, AJ., Bjorklund, S., Blackwell, TK., Borggrefe, T., Carey, M., Carlson, M., Conaway, JW., Conaway, RC., Emmons, SW., Fondell, JD., Freedman, LP., Fukasawa, T., Gustafsson, CM., Han, M., He, X., Herman, PK., Hinnebusch, AG., Holmberg, S., Holstege, FC., Jaehning, JA., Kim, YJ., Kuras, L., Leutz, A., Lis, JT., Meisterernest, M., Naar, AM., Nasmyth, K., Parvin, JD., Ptashne, M., Reinberg, D., Ronne, H., Sadowski, I., Sakurai, H., Sipiczki, M., Sternberg, PW., Stillman, DJ., Strich, R., Struhl, K., Svejstrup, JQ., Tuck, S., Winston, F., Roeder, RG., Kornberg, RD. (2004)

A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II.

Mol Cell. 14(5):553-7
Maurer-Stroh, S., Eisenhaber, F. (2004)

Myristoylation of viral and bacterial proteins.

Trends Microbiol. 12(4):178-85
Matsuo, K., Galson, DL., Zhao, C., Peng, L., Laplace, C., Wang, KZ., Bachler, MA., Amano, H., Aburatani, H., Ishikawa, H., Wagner, EF. (2004)

Nuclear factor of activated T-cells (NFAT) rescues osteoclastogenesis in precursors lacking c-Fos.

J Biol Chem. 279(25):26475-80
Rabitsch, KP., Gregan, J., Schleiffer, A., Javerzat, JP., Eisenhaber, F., Nasmyth, K. (2004)

Two fission yeast homologs of Drosophila Mei-S332 are required for chromosome segregation during meiosis I and II.

Curr Biol. 14(4):287-301
Schotta, G., Lachner, M., Sarma, K., Ebert, A., Sengupta, R., Reuter, G., Reinberg, D., Jenuwein, T. (2004)

A silencing pathway to induce H3-K9 and H4-K20 trimethylation at constitutive heterochromatin.

Genes Dev. 18(11):1251-62
Perez-Burgos, L., Peters, AH., Opravil, S., Kauer, M., Mechtler, K., Jenuwein, T. (2004)

Generation and characterization of methyl-lysine histone antibodies.

Methods Enzymol. 376:234-54
Sullivan, M., Higuchi, T., Katis, VL., Uhlmann, F. (2004)

Cdc14 phosphatase induces rDNA condensation and resolves cohesin-independent cohesion during budding yeast anaphase.

Cell. 117(4):471-82
Wilken, C., Kitzing, K., Kurzbauer, R., Ehrmann, M., Clausen, T. (2004)

Crystal structure of the DegS stress sensor: How a PDZ domain recognizes misfolded protein and activates a protease.

Cell. 117(4):483-94
Cheng, L., Arata, A., Mizuguchi, R., Qian, Y., Karunaratne, A., Gray, PA., Arata, S., Shirasawa, S., Bouchard, M., Luo, P., Chen, CL., Busslinger, M., Goulding, M., Onimaru, H., Ma, Q. (2004)

Tlx3 and Tlx1 are post-mitotic selector genes determining glutamatergic over GABAergic cell fates.

Nat Neurosci. 7(5):510-7
Katis, VL., Galova, M., Rabitsch, KP., Gregan, J., Nasmyth, K. (2004)

Maintenance of cohesin at centromeres after meiosis I in budding yeast requires a kinetochore-associated protein related to MEI-S332.

Curr Biol. 14(7):560-72
Schotta, G., Lachner, M., Peters, AH., Jenuwein, T. (2004)

The indexing potential of histone lysine methylation.

Novartis Found Symp. 259:22-37; discussion 37-47, 163-9
Klucky, B., Koch, B., Radolf, M., Steinlein, P., Wintersberger, E. (2004)

Polyomavirus tumorantigens have a profound effect on gene expression in mouse fibroblasts.

Oncogene. 23(27):4707-21
Maschler, S., Grunert, S., Danielopol, A., Beug, H., Wirl, G. (2004)

Enhanced tenascin-C expression and matrix deposition during Ras/TGF-beta-induced progression of mammary tumor cells.

Oncogene. 23(20):3622-33
Wick, N., Schleiffer, A., Huber, LA., Vietor, I. (2004)

Inhibitory effect of TIS7 on Sp1-C/EBPalpha transcription factor module activity.

J Mol Biol. 336(3):589-95
Eger, A., Stockinger, A., Park, J., Langkopf, E., Mikula, M., Gotzmann, J., Mikulits, W., Beug, H., Foisner, R. (2004)

beta-Catenin and TGFbeta signalling cooperate to maintain a mesenchymal phenotype after FosER-induced epithelial to mesenchymal transition.

Oncogene. 23(15):2672-2680
Kuzmichev, A., Jenuwein, T., Tempst, P., Reinberg, D. (2004)

Different EZH2-containing complexes target methylation of histone H1 or nucleosomal histone H3.

Mol Cell. 14(2):183-93
Cserzo, M., Eisenhaber, F., Eisenhaber, B., Simon, I. (2004)

TM or not TM: transmembrane protein prediction with low false positive rate using DAS-TMfilter.

Bioinformatics. 20(1):136-7
Vadivelu, SK., Kurzbauer, R., Dieplinger, B., Zweyer, M., Schafer, R., Wernig, A., Vietor, I., Huber, LA. (2004)

Muscle regeneration and myogenic differentiation defects in mice lacking TIS7.

Mol Cell Biol. 24(8):3514-25
Nasmyth, K., Schleiffer, A. (2004)

From a single double helix to paired double helices and back.

Philos Trans R Soc Lond B Biol Sci. 359(1441):99-108
Tronche, F., Opherk, C., Moriggl, R., Kellendonk, C., Reimann, A., Schwake, L., Reichardt, HM., Stangl, K., Gau, D., Hoeflich, A., Beug, H., Schmid, W., Schütz, G. (2004)

Glucocorticoid receptor function in hepatocytes is essential to promote postnatal body growth.

Genes Dev. 18(5):492-7
Fuxa, M., Skok, J., Souabni, A., Salvagiotto, G., Roldan, E., Busslinger, M. (2004)

Pax5 induces V-to-DJ rearrangements and locus contraction of the immunoglobulin heavy-chain gene.

Genes Dev. 18(4):411-22
Wada, T., Joza, N., Cheng, HY., Sasaki, T., Kozieradzki, I., Bachmaier, K., Katada, T., Schreiber, M., Wagner, EF., Nishina, H., Penninger, JM. (2004)

MKK7 couples stress signalling to G2/M cell-cycle progression and cellular senescence.

Nat Cell Biol. 6(3):215-26
Amatschek, S., Koenig, U., Auer, H., Steinlein, P., Pacher, M., Gruenfelder, A., Dekan, G., Vogl, S., Kubista, E., Heider, KH., Stratowa, C., Schreiber, M., Sommergruber, W. (2004)

Tissue-wide expression profiling using cDNA subtraction and microarrays to identify tumor-specific genes.

Cancer Res. 64(3):844-56
Mikula, M., Fuchs, E., Huber, H., Beug, H., Schulte-Hermann, R., Mikulits, W. (2004)

Immortalized p19ARF null hepatocytes restore liver injury and generate hepatic progenitors after transplantation.

Hepatology. 39(3):628-34
Dewar, H., Tanaka, K., Nasmyth, K., Tanaka, TU. (2004)

Tension between two kinetochores suffices for their bi-orientation on the mitotic spindle.

Nature. 428(6978):93-7
Haigh, JJ., Ema, M., Haigh, K., Gertsenstein, M., Greer, P., Rossant, J., Nagy, A., Wagner, EF. (2004)

Activated Fps/Fes partially rescues the in vivo developmental potential of Flk1-deficient vascular progenitor cells.

Blood. 103(3):912-20
Gotzmann, J., Mikula, M., Eger, A., Schulte-Hermann, R., Foisner, R., Beug, H., Mikulits, W. (2004)

Molecular aspects of epithelial cell plasticity: implications for local tumor invasion and metastasis.

Mutat Res. 566(1):9-20
Tschachler, E., Reinisch, CM., Mayer, C., Paiha, K., Lassmann, H., Weninger, W. (2004)

Sheet preparations expose the dermal nerve plexus of human skin and render the dermal nerve end organ accessible to extensive analysis.

J Invest Dermatol. 122(1):177-82
Novatchkova, M., Eisenhaber, F. (2004)

Linking transcriptional mediators via the GACKIX domain super family.

Curr Biol. 14(2):R54-5
Wirth, KG., Ricci, R., Giménez-Abián, JF., Taghybeeglu, S., Kudo, NR., Jochum, W., Vasseur-Cognet, M., Nasmyth, K. (2004)

Loss of the anaphase-promoting complex in quiescent cells causes unscheduled hepatocyte proliferation.

Genes Dev. 18(1):88-98
García-Cao, M., O'Sullivan, R., Peters, AH., Jenuwein, T., Blasco, MA. (2004)

Epigenetic regulation of telomere length in mammalian cells by the Suv39h1 and Suv39h2 histone methyltransferases.

Nat Genet. 36(1):94-9
Wiederkehr, C., Basavaraj, R., Sarrauste de Menthière, C., Hermida, L., Koch, R., Schlecht, U., Amon, A., Brachat, S., Breitenbach, M., Briza, P., Caburet, S., Cherry, M., Davis, R., Deutschbauer, A., Dickinson, HG., Dumitrescu, T., Fellous, M., Goldman, A., Grootegoed, JA., Hawley, R., Ishii, R., Jégou, B., Kaufman, RJ., Klein, F., Lamb, N., Maro, B., Nasmyth, K., Nicolas, A., Orr-Weaver, T., Philippsen, P., Pineau, C., Rabitsch, KP., Reinke, V., Roest, H., Saunders, W., Schröder, M., Schedl, T., Siep, M., Villeneuve, A., Wolgemuth, DJ., Yamamoto, M., Zickler, D., Esposito, RE., Primig, M. (2004)

GermOnline, a cross-species community knowledgebase on germ cell differentiation.

Nucleic Acids Res. 32(Database issue):D560-7
Beyer A., Lawtrakul L., Hannongbua S., Wolschann P. (2004)

Systematic Investigation of Non-Nucleoside Inhibitors of HIV-1 Reverse Transcriptase (NNRTIs)

Chemical Monthly. 135(8):1047-1059
Matsui, K., Nagy-Bojarsky, K., Laakkonen, P., Krieger, S., Mechtler, K., Uchida, S., Geleff, S., Kang, DH., Johnson, RJ., Kerjaschki, D., Kang, DH. (2003)

Lymphatic microvessels in the rat remnant kidney model of renal fibrosis: aminopeptidase p and podoplanin are discriminatory markers for endothelial cells of blood and lymphatic vessels.

J Am Soc Nephrol. 14(8):1981-9
Glotzer, M. (2003)

Cytokinesis: progress on all fronts.

Curr Opin Cell Biol. 15(6):684-90
Groll, M., Clausen, T. (2003)

Molecular shredders: how proteasomes fulfill their role.

Curr Opin Struct Biol. 13(6):665-73
Herceg, Z., Li, H., Cuenin, C., Shukla, V., Radolf, M., Steinlein, P., Wang, ZQ. (2003)

Genome-wide analysis of gene expression regulated by the HAT cofactor Trrap in conditional knockout cells.

Nucleic Acids Res. 31(23):7011-23
Tanaka, EM. (2003)

Cell differentiation and cell fate during urodele tail and limb regeneration.

Curr Opin Genet Dev. 13(5):497-501
Fleischmann, A., Jochum, W., Eferl, R., Witowsky, J., Wagner, EF. (2003)

Rhabdomyosarcoma development in mice lacking Trp53 and Fos: tumor suppression by the Fos protooncogene.

Cancer Cell. 4(6):477-82
Sun, Y., Kanekar, SL., Vetter, ML., Gorski, S., Jan, YN., Glaser, T., Brown, NL. (2003)

Conserved and divergent functions of Drosophila atonal, amphibian, and mammalian Ath5 genes.

Evol Dev. 5(5):532-41
Yeong, FM., Hombauer, H., Wendt, KS., Hirota, T., Mudrak, I., Mechtler, K., Loregger, T., Marchler-Bauer, A., Tanaka, K., Peters, JM., Ogris, E. (2003)

Identification of a subunit of a novel Kleisin-beta/SMC complex as a potential substrate of protein phosphatase 2A.

Curr Biol. 13(23):2058-64
Arumugam, P., Gruber, S., Tanaka, K., Haering, CH., Mechtler, K., Nasmyth, K. (2003)

ATP hydrolysis is required for cohesin's association with chromosomes.

Curr Biol. 13(22):1941-53
Eisenhaber, B., Wildpaner, M., Schultz, CJ., Borner, GH., Dupree, P., Eisenhaber, F. (2003)

Glycosylphosphatidylinositol lipid anchoring of plant proteins. Sensitive prediction from sequence- and genome-wide studies for Arabidopsis and rice.

Plant Physiol. 133(4):1691-701
Maurer-Stroh, S., Washietl, S., Eisenhaber, F. (2003)

Protein prenyltransferases: anchor size, pseudogenes and parasites.

Biol Chem. 384(7):977-89
Terret, ME., Wassmann, K., Waizenegger, I., Maro, B., Peters, JM., Verlhac, MH. (2003)

The meiosis I-to-meiosis II transition in mouse oocytes requires separase activity.

Curr Biol. 13(20):1797-802
Kraft, C. (2003)

Mitotic entry: tipping the balance.

Curr Biol. 13(11):R445-6
Kraft, C., Herzog, F., Gieffers, C., Mechtler, K., Hagting, A., Pines, J., Peters, JM. (2003)

Mitotic regulation of the human anaphase-promoting complex by phosphorylation.

EMBO J. 22(24):6598-609
Subramanian, A., Prokop, A., Yamamoto, M., Sugimura, K., Uemura, T., Betschinger, J., Knoblich, JA., Volk, T. (2003)

Shortstop recruits EB1/APC1 and promotes microtubule assembly at the muscle-tendon junction.

Curr Biol. 13(13):1086-95
Santos, F., Zakhartchenko, V., Stojkovic, M., Peters, A., Jenuwein, T., Wolf, E., Reik, W., Dean, W. (2003)

Epigenetic marking correlates with developmental potential in cloned bovine preimplantation embryos.

Curr Biol. 13(13):1116-21
Schneeberger, A., Lührs, P., Kutil, R., Steinlein, P., Schild, H., Schmidt, W., Stingl, G. (2003)

Granulocyte-macrophage colony-stimulating factor-based melanoma cell vaccines immunize syngeneic and allogeneic recipients via host dendritic cells.

J Immunol. 171(10):5180-7
Rohde, HM., Cheong, FY., Konrad, G., Paiha, K., Mayinger, P., Boehmelt, G. (2003)

The human phosphatidylinositol phosphatase SAC1 interacts with the coatomer I complex.

J Biol Chem. 278(52):52689-99
Peters, AH., Kubicek, S., Mechtler, K., O'Sullivan, RJ., Derijck, AA., Perez-Burgos, L., Kohlmaier, A., Opravil, S., Tachibana, M., Shinkai, Y., Martens, JH., Jenuwein, T. (2003)

Partitioning and plasticity of repressive histone methylation states in mammalian chromatin.

Mol Cell. 12(6):1577-89
Vodermaier, HC., Gieffers, C., Maurer-Stroh, S., Eisenhaber, F., Peters, JM. (2003)

TPR subunits of the anaphase-promoting complex mediate binding to the activator protein CDH1.

Curr Biol. 13(17):1459-68
Lehnertz, B., Ueda, Y., Derijck, AA., Braunschweig, U., Perez-Burgos, L., Kubicek, S., Chen, T., Li, E., Jenuwein, T., Peters, AH. (2003)

Suv39h-mediated histone H3 lysine 9 methylation directs DNA methylation to major satellite repeats at pericentric heterochromatin.

Curr Biol. 13(14):1192-200
Mishima, M., Glotzer, M. (2003)

Cytokinesis: a logical GAP.

Curr Biol. 13(15):R589-91
Senti, KA., Usui, T., Boucke, K., Greber, U., Uemura, T., Dickson, BJ. (2003)

Flamingo regulates R8 axon-axon and axon-target interactions in the Drosophila visual system.

Curr Biol. 13(10):828-32
Lachner, M., O'Sullivan, RJ., Jenuwein, T. (2003)

An epigenetic road map for histone lysine methylation.

J Cell Sci. 116(Pt 11):2117-24
Lebigot, I., Gardellin, P., Lefebvre, L., Beug, H., Ghysdael, J., Quang, CT. (2003)

Up-regulation of SLAP in FLI-1-transformed erythroblasts interferes with EpoR signaling.

Blood. 102(13):4555-62
Dazy, S., Damiola, F., Parisey, N., Beug, H., Gandrillon, O. (2003)

The MEK-1/ERKs signalling pathway is differentially involved in the self-renewal of early and late avian erythroid progenitor cells.

Oncogene. 22(58):9205-16
Szremska, AP., Kenner, L., Weisz, E., Ott, RG., Passegué, E., Artwohl, M., Freissmuth, M., Stoxreiter, R., Theussl, HC., Parzer, SB., Moriggl, R., Wagner, EF., Sexl, V. (2003)

JunB inhibits proliferation and transformation in B-lymphoid cells.

Blood. 102(12):4159-65
Haering, CH., Nasmyth, K. (2003)

Building and breaking bridges between sister chromatids.

Bioessays. 25(12):1178-91
Redlich, K., Schett, G., Steiner, G., Hayer, S., Wagner, EF., Smolen, JS. (2003)

Rheumatoid arthritis therapy after tumor necrosis factor and interleukin-1 blockade.

Arthritis Rheum. 48(12):3308-19
Eferl, R., Wagner, EF. (2003)

AP-1: a double-edged sword in tumorigenesis.

Nat Rev Cancer. 3(11):859-68
Novatchkova, M., Leibbrandt, A., Werzowa, J., Neubüser, A., Eisenhaber, F. (2003)

The STIR-domain superfamily in signal transduction, development and immunity.

Trends Biochem Sci. 28(5):226-9
Gilbert, N., Boyle, S., Sutherland, H., de Las Heras, J., Allan, J., Jenuwein, T., Bickmore, WA. (2003)

Formation of facultative heterochromatin in the absence of HP1.

EMBO J. 22(20):5540-50
Mitulović, G., Smoluch, M., Chervet, JP., Steinmacher, I., Kungl, A., Mechtler, K. (2003)

An improved method for tracking and reducing the void volume in nano HPLC-MS with micro trapping columns.

Anal Bioanal Chem. 376(7):946-51
Kolbus, A., Blázquez-Domingo, M., Carotta, S., Bakker, W., Luedemann, S., von Lindern, M., Steinlein, P., Beug, H. (2003)

Cooperative signaling between cytokine receptors and the glucocorticoid receptor in the expansion of erythroid progenitors: molecular analysis by expression profiling.

Blood. 102(9):3136-46
Sibilia, M., Wagner, B., Hoebertz, A., Elliott, C., Marino, S., Jochum, W., Wagner, EF. (2003)

Mice humanised for the EGF receptor display hypomorphic phenotypes in skin, bone and heart.

Development. 130(19):4515-25
Mayr, B., Schaffner, G., Reifinger, M., Loupal, G. (2003)

K-ras protooncogene mutations in feline pancreatic adenocarcinomas.

Vet Rec. 153(15):468-9
Wagner, EF., Matsuo, K. (2003)

Signalling in osteoclasts and the role of Fos/AP1 proteins.

Ann Rheum Dis. 62 Suppl 2:ii83-5
Jechlinger, M., Grunert, S., Tamir, IH., Janda, E., Lüdemann, S., Waerner, T., Seither, P., Weith, A., Beug, H., Kraut, N. (2003)

Expression profiling of epithelial plasticity in tumor progression.

Oncogene. 22(46):7155-69
Haigh, JJ., Morelli, PI., Gerhardt, H., Haigh, K., Tsien, J., Damert, A., Miquerol, L., Muhlner, U., Klein, R., Ferrara, N., Wagner, EF., Betsholtz, C., Nagy, A. (2003)

Cortical and retinal defects caused by dosage-dependent reductions in VEGF-A paracrine signaling.

Dev Biol. 262(2):225-41
Erhardt, S., Su, IH., Schneider, R., Barton, S., Bannister, AJ., Perez-Burgos, L., Jenuwein, T., Kouzarides, T., Tarakhovsky, A., Surani, MA. (2003)

Consequences of the depletion of zygotic and embryonic enhancer of zeste 2 during preimplantation mouse development.

Development. 130(18):4235-48
Mikula, M., Gotzmann, J., Fischer, AN., Wolschek, MF., Thallinger, C., Schulte-Hermann, R., Beug, H., Mikulits, W. (2003)

The proto-oncoprotein c-Fos negatively regulates hepatocellular tumorigenesis.

Oncogene. 22(43):6725-38
von Boehmer, H., Aifantis, I., Gounari, F., Azogui, O., Haughn, L., Apostolou, I., Jaeckel, E., Grassi, F., Klein, L. (2003)

Thymic selection revisited: how essential is it?

Immunol Rev. 191:62-78
Fleischmann, A., Hvalby, O., Jensen, V., Strekalova, T., Zacher, C., Layer, LE., Kvello, A., Reschke, M., Spanagel, R., Sprengel, R., Wagner, EF., Gass, P. (2003)

Impaired long-term memory and NR2A-type NMDA receptor-dependent synaptic plasticity in mice lacking c-Fos in the CNS.

J Neurosci. 23(27):9116-22
Giménez-Abián, JF., Clarke, DJ. (2003)

Replication-coupled topoisomerase II templates the mitotic chromosome scaffold?

Cell Cycle. 2(3):230-2
Hauf, S. (2003)

Fine tuning of kinetochore function by phosphorylation.

Cell Cycle. 2(3):228-9
Mayr, B., Schaffner, G., Reifinger, M. (2003)

K-ras mutations in canine pancreatic cancers.

Vet Rec. 153(3):87-9
Weiss, C., Schneider, S., Wagner, EF., Zhang, X., Seto, E., Bohmann, D. (2003)

JNK phosphorylation relieves HDAC3-dependent suppression of the transcriptional activity of c-Jun.

EMBO J. 22(14):3686-95
Gabellini, D., Colaluca, IN., Vodermaier, HC., Biamonti, G., Giacca, M., Falaschi, A., Riva, S., Peverali, FA. (2003)

Early mitotic degradation of the homeoprotein HOXC10 is potentially linked to cell cycle progression.

EMBO J. 22(14):3715-24
Heavey, B., Charalambous, C., Cobaleda, C., Busslinger, M. (2003)

Myeloid lineage switch of Pax5 mutant but not wild-type B cell progenitors by C/EBPalpha and GATA factors.

EMBO J. 22(15):3887-97
Grünert, S., Jechlinger, M., Beug, H. (2003)

Diverse cellular and molecular mechanisms contribute to epithelial plasticity and metastasis.

Nat Rev Mol Cell Biol. 4(8):657-65
Bobola, N., Carapuço, M., Ohnemus, S., Kanzler, B., Leibbrandt, A., Neubüser, A., Drouin, J., Mallo, M. (2003)

Mesenchymal patterning by Hoxa2 requires blocking Fgf-dependent activation of Ptx1.

Development. 130(15):3403-14
Anakwe, K., Robson, L., Hadley, J., Buxton, P., Church, V., Allen, S., Hartmann, C., Harfe, B., Nohno, T., Brown, AM., Evans, DJ., Francis-West, P. (2003)

Wnt signalling regulates myogenic differentiation in the developing avian wing.

Development. 130(15):3503-14
Wick, N., Thurner, S., Paiha, K., Sedivy, R., Vietor, I., Huber, LA. (2003)

Quantitative measurement of cell migration using time-lapse videomicroscopy and non-linear system analysis.

Histochem Cell Biol. 119(1):15-20
Eisenhaber, F., Eisenhaber, B., Kubina, W., Maurer-Stroh, S., Neuberger, G., Schneider, G., Wildpaner, M. (2003)

Prediction of lipid posttranslational modifications and localization signals from protein sequences: big-Pi, NMT and PTS1.

Nucleic Acids Res. 31(13):3631-4
Jaeckel, E., Klein, L., Martin-Orozco, N., von Boehmer, H. (2003)

Normal incidence of diabetes in NOD mice tolerant to glutamic acid decarboxylase.

J Exp Med. 197(12):1635-44
Echeverri, K., Tanaka, EM. (2003)

Electroporation as a tool to study in vivo spinal cord regeneration.

Dev Dyn. 226(2):418-25
Zenz, R., Scheuch, H., Martin, P., Frank, C., Eferl, R., Kenner, L., Sibilia, M., Wagner, EF. (2003)

c-Jun regulates eyelid closure and skin tumor development through EGFR signaling.

Dev Cell. 4(6):879-89
Tanaka, EM. (2003)

Regeneration: if they can do it, why can't we?

Cell. 113(5):559-62
Eisenhaber, B., Maurer-Stroh, S., Novatchkova, M., Schneider, G., Eisenhaber, F. (2003)

Enzymes and auxiliary factors for GPI lipid anchor biosynthesis and post-translational transfer to proteins.

Bioessays. 25(4):367-85
Schausberger, E., Eferl, R., Parzefall, W., Chabicovsky, M., Breit, P., Wagner, EF., Schulte-Hermann, R., Grasl-Kraupp, B., Chabikovsky, M. (2003)

Induction of DNA synthesis in primary mouse hepatocytes is associated with nuclear pro-transforming growth factor alpha and erbb-1 and is independent of c-jun.

Carcinogenesis. 24(5):835-41
Hauf, S., Cole, RW., LaTerra, S., Zimmer, C., Schnapp, G., Walter, R., Heckel, A., van Meel, J., Rieder, CL., Peters, JM. (2003)

The small molecule Hesperadin reveals a role for Aurora B in correcting kinetochore-microtubule attachment and in maintaining the spindle assembly checkpoint.

J Cell Biol. 161(2):281-94
Romano, A., Guse, A., Krascenicova, I., Schnabel, H., Schnabel, R., Glotzer, M. (2003)

CSC-1: a subunit of the Aurora B kinase complex that binds to the survivin-like protein BIR-1 and the incenp-like protein ICP-1.

J Cell Biol. 161(2):229-36
Clyne, RK., Katis, VL., Jessop, L., Benjamin, KR., Herskowitz, I., Lichten, M., Nasmyth, K. (2003)

Polo-like kinase Cdc5 promotes chiasmata formation and cosegregation of sister centromeres at meiosis I.

Nat Cell Biol. 5(5):480-5
Rabitsch, KP., Petronczki, M., Javerzat, JP., Genier, S., Chwalla, B., Schleiffer, A., Tanaka, TU., Nasmyth, K. (2003)

Kinetochore recruitment of two nucleolar proteins is required for homolog segregation in meiosis I.

Dev Cell. 4(4):535-48
Buonomo, SB., Rabitsch, KP., Fuchs, J., Gruber, S., Sullivan, M., Uhlmann, F., Petronczki, M., Tóth, A., Nasmyth, K. (2003)

Division of the nucleolus and its release of CDC14 during anaphase of meiosis I depends on separase, SPO12, and SLK19.

Dev Cell. 4(5):727-39
Silva, J., Mak, W., Zvetkova, I., Appanah, R., Nesterova, TB., Webster, Z., Peters, AH., Jenuwein, T., Otte, AP., Brockdorff, N. (2003)

Establishment of histone h3 methylation on the inactive X chromosome requires transient recruitment of Eed-Enx1 polycomb group complexes.

Dev Cell. 4(4):481-95
Wick, N., Luedemann, S., Vietor, I., Cotten, M., Wildpaner, M., Schneider, G., Eisenhaber, F., Huber, LA. (2003)

Induction of short interspersed nuclear repeat-containing transcripts in epithelial cells upon infection with a chicken adenovirus.

J Mol Biol. 328(4):779-90
Schlingemann, J., Hess, J., Wrobel, G., Breitenbach, U., Gebhardt, C., Steinlein, P., Kramer, H., Fürstenberger, G., Hahn, M., Angel, P., Lichter, P. (2003)

Profile of gene expression induced by the tumour promotor TPA in murine epithelial cells.

Int J Cancer. 104(6):699-708
Schleiffer, A., Kaitna, S., Maurer-Stroh, S., Glotzer, M., Nasmyth, K., Eisenhaber, F. (2003)

Kleisins: a superfamily of bacterial and eukaryotic SMC protein partners.

Mol Cell. 11(3):571-5
Dickson, BJ. (2003)

Development. Wiring the brain with insulin.

Science. 300(5618):440-1
Neuberger, G., Maurer-Stroh, S., Eisenhaber, B., Hartig, A., Eisenhaber, F. (2003)

Motif refinement of the peroxisomal targeting signal 1 and evaluation of taxon-specific differences.

J Mol Biol. 328(3):567-79
Neuberger, G., Maurer-Stroh, S., Eisenhaber, B., Hartig, A., Eisenhaber, F. (2003)

Prediction of peroxisomal targeting signal 1 containing proteins from amino acid sequence.

J Mol Biol. 328(3):581-92
Mayr, B., Holzheu, M., Schaffner, G., Reifinger, M. (2003)

N-ras mutation in a canine lymphoma: short communication.

Acta Vet Hung. 51(1):91-4
Maurer-Stroh, S., Washietl, S., Eisenhaber, F. (2003)

Protein prenyltransferases.

Genome Biol. 4(4):212
Gruber, S., Haering, CH., Nasmyth, K. (2003)

Chromosomal cohesin forms a ring.

Cell. 112(6):765-77
Mayr, B., Schaffner, G., Reifinger, M., Zwetkoff, S., Prodinger, B. (2003)

N-ras mutations in canine malignant melanomas.

Vet J. 165(2):169-71
Betschinger, J., Mechtler, K., Knoblich, JA. (2003)

The Par complex directs asymmetric cell division by phosphorylating the cytoskeletal protein Lgl.

Nature. 422(6929):326-30
Weston, CR., Balmanno, K., Chalmers, C., Hadfield, K., Molton, SA., Ley, R., Wagner, EF., Cook, SJ. (2003)

Activation of ERK1/2 by deltaRaf-1:ER* represses Bim expression independently of the JNK or PI3K pathways.

Oncogene. 22(9):1281-93
Maurer-Stroh, S., Dickens, NJ., Hughes-Davies, L., Kouzarides, T., Eisenhaber, F., Ponting, CP. (2003)

The Tudor domain 'Royal Family': Tudor, plant Agenet, Chromo, PWWP and MBT domains.

Trends Biochem Sci. 28(2):69-74
Petronczki, M., Siomos, MF., Nasmyth, K. (2003)

Un ménage à quatre: the molecular biology of chromosome segregation in meiosis.

Cell. 112(4):423-40
Cheutin, T., McNairn, AJ., Jenuwein, T., Gilbert, DM., Singh, PB., Misteli, T. (2003)

Maintenance of stable heterochromatin domains by dynamic HP1 binding.

Science. 299(5607):721-5
Eferl, R., Ricci, R., Kenner, L., Zenz, R., David, JP., Rath, M., Wagner, EF. (2003)

Liver tumor development. c-Jun antagonizes the proapoptotic activity of p53.

Cell. 112(2):181-92
Kaiser, JT., Bruno, S., Clausen, T., Huber, R., Schiaretti, F., Mozzarelli, A., Kessler, D. (2003)

Snapshots of the cystine lyase C-DES during catalysis. Studies in solution and in the crystalline state.

J Biol Chem. 278(1):357-65
Behrens, A., Haigh, J., Mechta-Grigoriou, F., Nagy, A., Yaniv, M., Wagner, EF. (2003)

Impaired intervertebral disc formation in the absence of Jun.

Development. 130(1):103-9
Thurner S., Wick N., Hanel R., Sedivy R., Huber L. (2003)

Anomalous diffusion on dynamical networks: a model for interacting epithelial cell migration

Physica A: Statistical Mechanics and its Applications. 320:475-484
Wutz, A. (2003)

Xist RNA associates with chromatin and causes gene silencing.

Non coding RNAs: Molecular biology and molecular (Landes Bioscience) (Barciszewski, J., Erdmann, V., eds.).
Hartmann, C. (2003)

Wnts in limb bud development.

Wnt Signalling in Development (Kühl, M., ed.). :156-169
Eisenhaber, F., Sunyaev, S., Tumanyan, V.G., and Kuznetsov, E.N. (2003)

Measuring Generality of Knowledge-Based Potential Extracted from Protein Structure Sets.

Frontiers in Computational Genomics (Galperin, M., Koonin, E., eds.). :64-93
Eisenhaber, F., Eisenhaber, B., and Maurer-Stroh, S. (2003)

Prediction of Post-translational modifications from amino acid sequence: Problems, pitfalls, methodological hints.

Bioinformatics and Genomes: Current Perspectives (Andrade, MM., ed.). :81-105
Jechlinger, M., Grünert, S., Beug, H. (2002)

Mechanisms in epithelial plasticity and metastasis: insights from 3D cultures and expression profiling.

J Mammary Gland Biol Neoplasia. 7(4):415-32
Macara, IG., Baldarelli, R., Field, CM., Glotzer, M., Hayashi, Y., Hsu, SC., Kennedy, MB., Kinoshita, M., Longtine, M., Low, C., Maltais, LJ., McKenzie, L., Mitchison, TJ., Nishikawa, T., Noda, M., Petty, EM., Peifer, M., Pringle, JR., Robinson, PJ., Roth, D., Russell, SE., Stuhlmann, H., Tanaka, M., Tanaka, T., Trimble, WS., Ware, J., Zeleznik-Le, NJ., Zieger, B. (2002)

Mammalian septins nomenclature.

Mol Biol Cell. 13(12):4111-3
David, JP., Sabapathy, K., Hoffmann, O., Idarraga, MH., Wagner, EF. (2002)

JNK1 modulates osteoclastogenesis through both c-Jun phosphorylation-dependent and -independent mechanisms.

J Cell Sci. 115(Pt 22):4317-25
Cserzö, M., Eisenhaber, F., Eisenhaber, B., Simon, I. (2002)

On filtering false positive transmembrane protein predictions.

Protein Eng. 15(9):745-52
Mendoza, M., Hyman, AA., Glotzer, M. (2002)

GTP binding induces filament assembly of a recombinant septin.

Curr Biol. 12(21):1858-63
Echeverri, K., Tanaka, EM. (2002)

Mechanisms of muscle dedifferentiation during regeneration.

Semin Cell Dev Biol. 13(5):353-60
Waizenegger, I., Giménez-Abián, JF., Wernic, D., Peters, JM. (2002)

Regulation of human separase by securin binding and autocleavage.

Curr Biol. 12(16):1368-78
Novatchkova, M., Eisenhaber, F. (2002)

A CH domain-containing N terminus in NuMA?

Protein Sci. 11(10):2281-4
Dolznig, H., Habermann, B., Stangl, K., Deiner, EM., Moriggl, R., Beug, H., Müllner, EW. (2002)

Apoptosis protection by the Epo target Bcl-X(L) allows factor-independent differentiation of primary erythroblasts.

Curr Biol. 12(13):1076-85
Redlich, K., Hayer, S., Ricci, R., David, JP., Tohidast-Akrad, M., Kollias, G., Steiner, G., Smolen, JS., Wagner, EF., Schett, G. (2002)

Osteoclasts are essential for TNF-alpha-mediated joint destruction.

J Clin Invest. 110(10):1419-27
Takayanagi, H., Kim, S., Koga, T., Nishina, H., Isshiki, M., Yoshida, H., Saiura, A., Isobe, M., Yokochi, T., Inoue, J., Wagner, EF., Mak, TW., Kodama, T., Taniguchi, T. (2002)

Induction and activation of the transcription factor NFATc1 (NFAT2) integrate RANKL signaling in terminal differentiation of osteoclasts.

Dev Cell. 3(6):889-901
Souabni, A., Cobaleda, C., Schebesta, M., Busslinger, M. (2002)

Pax5 promotes B lymphopoiesis and blocks T cell development by repressing Notch1.

Immunity. 17(6):781-93
Echeverri, K., Tanaka, EM. (2002)

Ectoderm to mesoderm lineage switching during axolotl tail regeneration.

Science. 298(5600):1993-6
Dickson, BJ. (2002)

Molecular mechanisms of axon guidance.

Science. 298(5600):1959-64
Kolbus, A., Pilat, S., Husak, Z., Deiner, EM., Stengl, G., Beug, H., Baccarini, M. (2002)

Raf-1 antagonizes erythroid differentiation by restraining caspase activation.

J Exp Med. 196(10):1347-53
Bouchard, M., Souabni, A., Mandler, M., Neubüser, A., Busslinger, M. (2002)

Nephric lineage specification by Pax2 and Pax8.

Genes Dev. 16(22):2958-70
Wagner, EF. (2002)

Functions of AP1 (Fos/Jun) in bone development.

Ann Rheum Dis. 61 Suppl 2:ii40-2
Vytvytska, O., Nagy, E., Blüggel, M., Meyer, HE., Kurzbauer, R., Huber, LA., Klade, CS. (2002)

Identification of vaccine candidate antigens of Staphylococcus aureus by serological proteome analysis.

Proteomics. 2(5):580-90
Kaitna, S., Schnabel, H., Schnabel, R., Hyman, AA., Glotzer, M. (2002)

A ubiquitin C-terminal hydrolase is required to maintain osmotic balance and execute actin-dependent processes in the early C. elegans embryo.

J Cell Sci. 115(Pt 11):2293-302
Gruneberg, U., Glotzer, M., Gartner, A., Nigg, EA. (2002)

The CeCDC-14 phosphatase is required for cytokinesis in the Caenorhabditis elegans embryo.

J Cell Biol. 158(5):901-14
Schebesta, M., Pfeffer, PL., Busslinger, M. (2002)

Control of pre-BCR signaling by Pax5-dependent activation of the BLNK gene.

Immunity. 17(4):473-85
Lachner, M., Jenuwein, T. (2002)

The many faces of histone lysine methylation.

Curr Opin Cell Biol. 14(3):286-98
Jenuwein, T. (2002)

Molecular biology. An RNA-guided pathway for the epigenome.

Science. 297(5590):2215-8
Kaitna, S., Pasierbek, P., Jantsch, M., Loidl, J., Glotzer, M. (2002)

The aurora B kinase AIR-2 regulates kinetochores during mitosis and is required for separation of homologous Chromosomes during meiosis.

Curr Biol. 12(10):798-812
Hidding, U., Mielke, K., Waetzig, V., Brecht, S., Hanisch, U., Behrens, A., Wagner, E., Herdegen, T. (2002)

The c-Jun N-terminal kinases in cerebral microglia: immunological functions in the brain.

Biochem Pharmacol. 64(5-6):781-8
Glotzer, M., Dechant, R. (2002)

Cytokinesis: regulated by destruction.

Curr Biol. 12(10):R344-6
Gotzmann, J., Huber, H., Thallinger, C., Wolschek, M., Jansen, B., Schulte-Hermann, R., Beug, H., Mikulits, W. (2002)

Hepatocytes convert to a fibroblastoid phenotype through the cooperation of TGF-beta1 and Ha-Ras: steps towards invasiveness.

J Cell Sci. 115(Pt 6):1189-202
Vietor, I., Vadivelu, SK., Wick, N., Hoffman, R., Cotten, M., Seiser, C., Fialka, I., Wunderlich, W., Haase, A., Korinkova, G., Brosch, G., Huber, LA. (2002)

TIS7 interacts with the mammalian SIN3 histone deacetylase complex in epithelial cells.

EMBO J. 21(17):4621-31
Berdnik, D., Török, T., González-Gaitán, M., Knoblich, JA. (2002)

The endocytic protein alpha-Adaptin is required for numb-mediated asymmetric cell division in Drosophila.

Dev Cell. 3(2):221-31
Schulte, CE., von Lindern, M., Steinlein, P., Beug, H., Wiedemann, LM. (2002)

MLL-ENL cooperates with SCF to transform primary avian multipotent cells.

EMBO J. 21(16):4297-306
Keleman, K., Rajagopalan, S., Cleppien, D., Teis, D., Paiha, K., Huber, LA., Technau, GM., Dickson, BJ. (2002)

Comm sorts robo to control axon guidance at the Drosophila midline.

Cell. 110(4):415-27
Lachner, M. (2002)

Epigenetics: SUPERMAN dresses up.

Curr Biol. 12(12):R434-6
Stroissnigg, H., Repitz, M., Miloloza, A., Linhartova, I., Beug, H., Wiche, G., Propst, F. (2002)

FIP-2, an IkappaB-kinase-gamma-related protein, is associated with the Golgi apparatus and translocates to the marginal band during chicken erythroblast differentiation.

Exp Cell Res. 278(2):133-45
Janda, E., Litos, G., Grünert, S., Downward, J., Beug, H. (2002)

Oncogenic Ras/Her-2 mediate hyperproliferation of polarized epithelial cells in 3D cultures and rapid tumor growth via the PI3K pathway.

Oncogene. 21(33):5148-59
Mayr, B., Winkler, G., Schaffner, G., Reifinger, M., Brem, G. (2002)

N-ras mutation in a feline lymphoma. Low frequency of N-ras mutations in a series of feline, canine and bovine lymphomas.

Vet J. 163(3):326-8
Dickson, BJ., Senti, KA. (2002)

Axon guidance: growth cones make an unexpected turn.

Curr Biol. 12(6):R218-20
Firnberg, N., Neubüser, A. (2002)

FGF signaling regulates expression of Tbx2, Erm, Pea3, and Pax3 in the early nasal region.

Dev Biol. 247(2):237-50
Herzig, M., Christofori, G. (2002)

Recent advances in cancer research: mouse models of tumorigenesis.

Biochim Biophys Acta. 1602(2):97-113
Mayr, B., Zwetkoff, S., Schaffner, G., Reifinger, M. (2002)

Tumour suppressor gene p53 mutation in a case of haemangiosarcoma of a dog.

Acta Vet Hung. 50(2):157-60
Vodermaier, HC., Peters, JM. (2002)

Conspiracy to disarm APC in interphase.

Nat Cell Biol. 4(5):E119-20
Sewalt, RG., Lachner, M., Vargas, M., Hamer, KM., den Blaauwen, JL., Hendrix, T., Melcher, M., Schweizer, D., Jenuwein, T., Otte, AP. (2002)

Selective interactions between vertebrate polycomb homologs and the SUV39H1 histone lysine methyltransferase suggest that histone H3-K9 methylation contributes to chromosomal targeting of Polycomb group proteins.

Mol Cell Biol. 22(15):5539-53
Hagting, A., Den Elzen, N., Vodermaier, HC., Waizenegger, IC., Peters, JM., Pines, J. (2002)

Human securin proteolysis is controlled by the spindle checkpoint and reveals when the APC/C switches from activation by Cdc20 to Cdh1.

J Cell Biol. 157(7):1125-37
González-Sancho, JM., Figueroa, A., López-Barahona, M., López, E., Beug, H., Muñoz, A. (2002)

Inhibition of proliferation and expression of T1 and cyclin D1 genes by thyroid hormone in mammary epithelial cells.

Mol Carcinog. 34(1):25-34
Vécsey-Semjén, B., Becker, KF., Sinski, A., Blennow, E., Vietor, I., Zatloukal, K., Beug, H., Wagner, E., Huber, LA. (2002)

Novel colon cancer cell lines leading to better understanding of the diversity of respective primary cancers.

Oncogene. 21(30):4646-62
Dickson, BJ., Keleman, K. (2002)

Netrins.

Curr Biol. 12(5):R154-5
Mikkola, I., Heavey, B., Horcher, M., Busslinger, M. (2002)

Reversion of B cell commitment upon loss of Pax5 expression.

Science. 297(5578):110-3
Lobmayr, L., Sauer, T., Killisch, I., Schranzhofer, M., Wilson, RB., Ponka, P., Beug, H., Müllner, EW. (2002)

Transferrin receptor hyperexpression in primary erythroblasts is lost on transformation by avian erythroblastosis virus.

Blood. 100(1):289-98
Lagger, G., O'Carroll, D., Rembold, M., Khier, H., Tischler, J., Weitzer, G., Schuettengruber, B., Hauser, C., Brunmeir, R., Jenuwein, T., Seiser, C. (2002)

Essential function of histone deacetylase 1 in proliferation control and CDK inhibitor repression.

EMBO J. 21(11):2672-81
Bakiri, L., Matsuo, K., Wisniewska, M., Wagner, EF., Yaniv, M. (2002)

Promoter specificity and biological activity of tethered AP-1 dimers.

Mol Cell Biol. 22(13):4952-64
Ivanov, D., Schleiffer, A., Eisenhaber, F., Mechtler, K., Haering, CH., Nasmyth, K. (2002)

Eco1 is a novel acetyltransferase that can acetylate proteins involved in cohesion.

Curr Biol. 12(4):323-8
Haering, CH., Löwe, J., Hochwagen, A., Nasmyth, K. (2002)

Molecular architecture of SMC proteins and the yeast cohesin complex.

Mol Cell. 9(4):773-88
Behrens, A., Sibilia, M., David, JP., Möhle-Steinlein, U., Tronche, F., Schütz, G., Wagner, EF. (2002)

Impaired postnatal hepatocyte proliferation and liver regeneration in mice lacking c-jun in the liver.

EMBO J. 21(7):1782-90
Schebesta, M., Heavey, B., Busslinger, M. (2002)

Transcriptional control of B-cell development.

Curr Opin Immunol. 14(2):216-23
Yoshida, K., Behrens, A., Le-Niculescu, H., Wagner, EF., Harada, T., Imaki, J., Ohno, S., Karin, M. (2002)

Amino-terminal phosphorylation of c-Jun regulates apoptosis in the retinal ganglion cells by optic nerve transection.

Invest Ophthalmol Vis Sci. 43(5):1631-5
Tekotte, H., Berdnik, D., Török, T., Buszczak, M., Jones, LM., Cooley, L., Knoblich, JA., Davis, I. (2002)

Dcas is required for importin-alpha3 nuclear export and mechano-sensory organ cell fate specification in Drosophila.

Dev Biol. 244(2):396-406
Sumara, I., Vorlaufer, E., Stukenberg, PT., Kelm, O., Redemann, N., Nigg, EA., Peters, JM. (2002)

The dissociation of cohesin from chromosomes in prophase is regulated by Polo-like kinase.

Mol Cell. 9(3):515-25
Karsenty, G., Wagner, EF. (2002)

Reaching a genetic and molecular understanding of skeletal development.

Dev Cell. 2(4):389-406
Schotta, G., Ebert, A., Krauss, V., Fischer, A., Hoffmann, J., Rea, S., Jenuwein, T., Dorn, R., Reuter, G. (2002)

Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing.

EMBO J. 21(5):1121-31
Ng, J., Nardine, T., Harms, M., Tzu, J., Goldstein, A., Sun, Y., Dietzl, G., Dickson, BJ., Luo, L. (2002)

Rac GTPases control axon growth, guidance and branching.

Nature. 416(6879):442-7
Hakeda-Suzuki, S., Ng, J., Tzu, J., Dietzl, G., Sun, Y., Harms, M., Nardine, T., Luo, L., Dickson, BJ. (2002)

Rac function and regulation during Drosophila development.

Nature. 416(6879):438-42
Takayanagi, H., Kim, S., Matsuo, K., Suzuki, H., Suzuki, T., Sato, K., Yokochi, T., Oda, H., Nakamura, K., Ida, N., Wagner, EF., Taniguchi, T. (2002)

RANKL maintains bone homeostasis through c-Fos-dependent induction of interferon-beta.

Nature. 416(6882):744-9
Maurer-Stroh, S., Eisenhaber, B., Eisenhaber, F. (2002)

N-terminal N-myristoylation of proteins: refinement of the sequence motif and its taxon-specific differences.

J Mol Biol. 317(4):523-40
Maurer-Stroh, S., Eisenhaber, B., Eisenhaber, F. (2002)

N-terminal N-myristoylation of proteins: prediction of substrate proteins from amino acid sequence.

J Mol Biol. 317(4):541-57
Mermoud, JE., Popova, B., Peters, AH., Jenuwein, T., Brockdorff, N. (2002)

Histone H3 lysine 9 methylation occurs rapidly at the onset of random X chromosome inactivation.

Curr Biol. 12(3):247-51
Hochedlinger, K., Wagner, EF., Sabapathy, K. (2002)

Differential effects of JNK1 and JNK2 on signal specific induction of apoptosis.

Oncogene. 21(15):2441-5
Maison, C., Bailly, D., Peters, AH., Quivy, JP., Roche, D., Taddei, A., Lachner, M., Jenuwein, T., Almouzni, G. (2002)

Higher-order structure in pericentric heterochromatin involves a distinct pattern of histone modification and an RNA component.

Nat Genet. 30(3):329-34
Wenzel, A., Iseli, HP., Fleischmann, A., Hafezi, F., Grimm, C., Wagner, EF., Remé, CE. (2002)

Fra-1 substitutes for c-Fos in AP-1-mediated signal transduction in retinal apoptosis.

J Neurochem. 80(6):1089-94
Wirth, K., Mertelsmann, R. (2002)

Cytoprotective function of keratinocyte growth factor in tumour therapy-induced tissue damage.

Br J Haematol. 116(3):505-10
Janda, E., Lehmann, K., Killisch, I., Jechlinger, M., Herzig, M., Downward, J., Beug, H., Grünert, S. (2002)

Ras and TGF[beta] cooperatively regulate epithelial cell plasticity and metastasis: dissection of Ras signaling pathways.

J Cell Biol. 156(2):299-313
Haemmerle, G., Zimmermann, R., Hayn, M., Theussl, C., Waeg, G., Wagner, E., Sattler, W., Magin, TM., Wagner, EF., Zechner, R. (2002)

Hormone-sensitive lipase deficiency in mice causes diglyceride accumulation in adipose tissue, muscle, and testis.

J Biol Chem. 277(7):4806-15
Passegué, E., Jochum, W., Behrens, A., Ricci, R., Wagner, EF. (2002)

JunB can substitute for Jun in mouse development and cell proliferation.

Nat Genet. 30(2):158-66
Tanaka, TU., Rachidi, N., Janke, C., Pereira, G., Galova, M., Schiebel, E., Stark, MJ., Nasmyth, K. (2002)

Evidence that the Ipl1-Sli15 (Aurora kinase-INCENP) complex promotes chromosome bi-orientation by altering kinetochore-spindle pole connections.

Cell. 108(3):317-29
Cavallaro, U., Schaffhauser, B., Christofori, G. (2002)

Cadherins and the tumour progression: is it all in a switch?

Cancer Lett. 176(2):123-8
Pfeffer, PL., Payer, B., Reim, G., di Magliano, MP., Busslinger, M. (2002)

The activation and maintenance of Pax2 expression at the mid-hindbrain boundary is controlled by separate enhancers.

Development. 129(2):307-18
Gannon, G., Mandriota, SJ., Cui, L., Baetens, D., Pepper, MS., Christofori, G. (2002)

Overexpression of vascular endothelial growth factor-A165 enhances tumor angiogenesis but not metastasis during beta-cell carcinogenesis.

Cancer Res. 62(2):603-8
Peters, AH., Mermoud, JE., O'Carroll, D., Pagani, M., Schweizer, D., Brockdorff, N., Jenuwein, T. (2002)

Histone H3 lysine 9 methylation is an epigenetic imprint of facultative heterochromatin.

Nat Genet. 30(1):77-80
Mayr, B., Schaffner, G., Reifinger, M., Loupal, G. (2002)

Feline tumour suppressor gene p53 - Mutation in a case of bronchial gland carcinoma

Folia Veterinaria. 46:49-51
Sickmann, A., Mechtler, K., Schäfer, H., Wagner, Y., Meyer, HE. (2002)

High troughput mass-spectrometry for proteomics analysis.

Transkript 2002. 7:37
Peters, JM. (2002)

Anaphase-promoting complex.

Encyclopedia of Molecular Medicine. :193-6
Mayr, B., Reifinger, M., Schaffner, G. (2002)

Canine N-ras oncogene-mutation in a case of malignant melanoma in the brain.

Folia Veterinaria. 46:161-2
Cotten, M., Baker, A., Birnstiel, ML., Zatloukal, K., Wagner, E. (2001)

Preparation of adenovirus-polylysine-DNA complexes.

Curr Protoc Hum Genet. Chapter 12:Unit 12.3
Knoblich, JA. (2001)

The Drosophila nervous system as a model for asymmetric cell division.

Symp Soc Exp Biol. (53):75-89
Tuckermann, JP., Vallon, R., Gack, S., Grigoriadis, AE., Porte, D., Lutz, A., Wagner, EF., Schmidt, J., Angel, P. (2001)

Expression of collagenase-3 (MMP-13) in c-fos-induced osteosarcomas and chondrosarcomas is restricted to a subset of cells of the osteo-/chondrogenic lineage.

Differentiation. 69(1):49-57
Milo-Landesman, D., Surana, M., Berkovich, I., Compagni, A., Christofori, G., Fleischer, N., Efrat, S. (2001)

Correction of hyperglycemia in diabetic mice transplanted with reversibly immortalized pancreatic beta cells controlled by the tet-on regulatory system.

Cell Transplant. 10(7):645-50
Cavallaro, U., Christofori, G. (2001)

Cell adhesion in tumor invasion and metastasis: loss of the glue is not enough.

Biochim Biophys Acta. 1552(1):39-45
Wildpaner, M., Schneider, G., Schleiffer, A., Eisenhaber, F. (2001)

Taxonomy workbench.

Bioinformatics. 17(12):1179-82
Ogris, M., Steinlein, P., Carotta, S., Brunner, S., Wagner, E. (2001)

DNA/polyethylenimine transfection particles: influence of ligands, polymer size, and PEGylation on internalization and gene expression.

AAPS PharmSci. 3(3):E21
Mandler, M., Neubüser, A. (2001)

FGF signaling is necessary for the specification of the odontogenic mesenchyme.

Dev Biol. 240(2):548-59
Siomos, MF., Badrinath, A., Pasierbek, P., Livingstone, D., White, J., Glotzer, M., Nasmyth, K. (2001)

Separase is required for chromosome segregation during meiosis I in Caenorhabditis elegans.

Curr Biol. 11(23):1825-35
Nasmyth, K., Peters, JM., Uhlmann, F. (2001)

Splitting the chromosome: cutting the ties that bind sister chromatids.

Novartis Found Symp. 237:113-33; discussion 133-8, 158-63
Christian, S., Ahorn, H., Novatchkova, M., Garin-Chesa, P., Park, JE., Weber, G., Eisenhaber, F., Rettig, WJ., Lenter, MC. (2001)

Molecular cloning and characterization of EndoGlyx-1, an EMILIN-like multisubunit glycoprotein of vascular endothelium.

J Biol Chem. 276(51):48588-95
Vodermaier, HC. (2001)

Cell cycle: Waiters serving the Destruction machinery.

Curr Biol. 11(20):R834-7
Pereira, G., Tanaka, TU., Nasmyth, K., Schiebel, E. (2001)

Modes of spindle pole body inheritance and segregation of the Bfa1p-Bub2p checkpoint protein complex.

EMBO J. 20(22):6359-70
Nasmyth, K. (2001)

A prize for proliferation.

Cell. 107(6):689-701
Glotzer, M. (2001)

Animal cell cytokinesis.

Annu Rev Cell Dev Biol. 17:351-86
Sonoda, E., Matsusaka, T., Morrison, C., Vagnarelli, P., Hoshi, O., Ushiki, T., Nojima, K., Fukagawa, T., Waizenegger, IC., Peters, JM., Earnshaw, WC., Takeda, S. (2001)

Scc1/Rad21/Mcd1 is required for sister chromatid cohesion and kinetochore function in vertebrate cells.

Dev Cell. 1(6):759-70
Ye, W., Bouchard, M., Stone, D., Liu, X., Vella, F., Lee, J., Nakamura, H., Ang, SL., Busslinger, M., Rosenthal, A. (2001)

Distinct regulators control the expression of the mid-hindbrain organizer signal FGF8.

Nat Neurosci. 4(12):1175-81
Keleman, K., Dickson, BJ. (2001)

Short- and long-range repulsion by the Drosophila Unc5 netrin receptor.

Neuron. 32(4):605-17
Schaefer, M., Knoblich, JA. (2001)

Protein localization during asymmetric cell division.

Exp Cell Res. 271(1):66-74
Berger, J., Suzuki, T., Senti, KA., Stubbs, J., Schaffner, G., Dickson, BJ. (2001)

Genetic mapping with SNP markers in Drosophila.

Nat Genet. 29(4):475-81
Peters, AH., O'Carroll, D., Scherthan, H., Mechtler, K., Sauer, S., Schöfer, C., Weipoltshammer, K., Pagani, M., Lachner, M., Kohlmaier, A., Opravil, S., Doyle, M., Sibilia, M., Jenuwein, T. (2001)

Loss of the Suv39h histone methyltransferases impairs mammalian heterochromatin and genome stability.

Cell. 107(3):323-37
Bachmair, A., Novatchkova, M., Potuschak, T., Eisenhaber, F. (2001)

Ubiquitylation in plants: a post-genomic look at a post-translational modification.

Trends Plant Sci. 6(10):463-70
Maurel-Zaffran, C., Suzuki, T., Gahmon, G., Treisman, JE., Dickson, BJ. (2001)

Cell-autonomous and -nonautonomous functions of LAR in R7 photoreceptor axon targeting.

Neuron. 32(2):225-35
Czvitkovich, S., Sauer, S., Peters, AH., Deiner, E., Wolf, A., Laible, G., Opravil, S., Beug, H., Jenuwein, T. (2001)

Over-expression of the SUV39H1 histone methyltransferase induces altered proliferation and differentiation in transgenic mice.

Mech Dev. 107(1-2):141-53
Huynh, JR., Petronczki, M., Knoblich, JA., St Johnston, D. (2001)

Bazooka and PAR-6 are required with PAR-1 for the maintenance of oocyte fate in Drosophila.

Curr Biol. 11(11):901-6
Stoll, SW., Kansra, S., Peshick, S., Fry, DW., Leopold, WR., Wiesen, JF., Sibilia, M., Zhang, T., Werb, Z., Derynck, R., Wagner, EF., Elder, JT. (2001)

Differential utilization and localization of ErbB receptor tyrosine kinases in skin compared to normal and malignant keratinocytes.

Neoplasia. 3(4):339-50
Reichardt, HM., Horsch, K., Gröne, HJ., Kolbus, A., Beug, H., Hynes, N., Schütz, G. (2001)

Mammary gland development and lactation are controlled by different glucocorticoid receptor activities.

Eur J Endocrinol. 145(4):519-27
Schaefer, M., Petronczki, M., Dorner, D., Forte, M., Knoblich, JA. (2001)

Heterotrimeric G proteins direct two modes of asymmetric cell division in the Drosophila nervous system.

Cell. 107(2):183-94
Wagner, EF., Karsenty, G. (2001)

Genetic control of skeletal development.

Curr Opin Genet Dev. 11(5):527-32
Nasmyth, K., Schweizer, D. (2001)

Exciting future planned for birthplace of genetics.

Nature. 413(6856):565
Stockinger, A., Eger, A., Wolf, J., Beug, H., Foisner, R. (2001)

E-cadherin regulates cell growth by modulating proliferation-dependent beta-catenin transcriptional activity.

J Cell Biol. 154(6):1185-96
Ellis, T., Gambardella, L., Horcher, M., Tschanz, S., Capol, J., Bertram, P., Jochum, W., Barrandon, Y., Busslinger, M. (2001)

The transcriptional repressor CDP (Cutl1) is essential for epithelial cell differentiation of the lung and the hair follicle.

Genes Dev. 15(17):2307-19
Mayr, B., Grüneis, C., Brem, G., Reifinger, M., Schaffner, G., Hochsteiner, W. (2001)

Lack of sequence variation in sporadic bovine leucosis in regions of tumour suppressor genes p53 and p16.

J Vet Med A Physiol Pathol Clin Med. 48(6):365-71
Breitenbach, U., Tuckermann, JP., Gebhardt, C., Richter, KH., Fürstenberger, G., Christofori, G., Angel, P. (2001)

Keratinocyte-specific onset of serine protease BSSP expression in experimental carcinogenesis.

J Invest Dermatol. 117(3):634-40
Grimm, C., Wenzel, A., Behrens, A., Hafezi, F., Wagner, EF., Remé, CE. (2001)

AP-1 mediated retinal photoreceptor apoptosis is independent of N-terminal phosphorylation of c-Jun.

Cell Death Differ. 8(8):859-67
Wendt, KS., Vodermaier, HC., Jacob, U., Gieffers, C., Gmachl, M., Peters, JM., Huber, R., Sondermann, P. (2001)

Crystal structure of the APC10/DOC1 subunit of the human anaphase-promoting complex.

Nat Struct Biol. 8(9):784-8
Pradet-Balade, B., Boulmé, F., Beug, H., Müllner, EW., Garcia-Sanz, JA. (2001)

Translation control: bridging the gap between genomics and proteomics?

Trends Biochem Sci. 26(4):225-9
Knoblich, JA. (2001)

Asymmetric cell division during animal development.

Nat Rev Mol Cell Biol. 2(1):11-20
Rabitsch, KP., Tóth, A., Gálová, M., Schleiffer, A., Schaffner, G., Aigner, E., Rupp, C., Penkner, AM., Moreno-Borchart, AC., Primig, M., Esposito, RE., Klein, F., Knop, M., Nasmyth, K. (2001)

A screen for genes required for meiosis and spore formation based on whole-genome expression.

Curr Biol. 11(13):1001-9
Jenuwein, T. (2001)

Re-SET-ting heterochromatin by histone methyltransferases.

Trends Cell Biol. 11(6):266-73
Cavallaro, U., Niedermeyer, J., Fuxa, M., Christofori, G. (2001)

N-CAM modulates tumour-cell adhesion to matrix by inducing FGF-receptor signalling.

Nat Cell Biol. 3(7):650-7
Jenuwein, T., Allis, CD. (2001)

Translating the histone code.

Science. 293(5532):1074-80
Hauf, S., Waizenegger, IC., Peters, JM. (2001)

Cohesin cleavage by separase required for anaphase and cytokinesis in human cells.

Science. 293(5533):1320-3
Nielsen, SJ., Schneider, R., Bauer, UM., Bannister, AJ., Morrison, A., O'Carroll, D., Firestein, R., Cleary, M., Jenuwein, T., Herrera, RE., Kouzarides, T. (2001)

Rb targets histone H3 methylation and HP1 to promoters.

Nature. 412(6846):561-5
Steinbach, JP., Kozmik, Z., Pfeffer, P., Aguzzi, A. (2001)

Overexpression of Pax5 is not sufficient for neoplastic transformation of mouse neuroectoderm.

Int J Cancer. 93(4):459-67
Eisenhaber, F., Wechselberger, C., Kreil, G. (2001)

The Brix domain protein family -- a key to the ribosomal biogenesis pathway?

Trends Biochem Sci. 26(6):345-7
Horcher, M., Souabni, A., Busslinger, M. (2001)

Pax5/BSAP maintains the identity of B cells in late B lymphopoiesis.

Immunity. 14(6):779-90
von Lindern, M., Deiner, EM., Dolznig, H., Parren-Van Amelsvoort, M., Hayman, MJ., Mullner, EW., Beug, H. (2001)

Leukemic transformation of normal murine erythroid progenitors: v- and c-ErbB act through signaling pathways activated by the EpoR and c-Kit in stress erythropoiesis.

Oncogene. 20(28):3651-64
Hofmann, JF., Sykora, M., Redemann, N., Beug, H. (2001)

G1-Cdk activity is required for both proliferation and viability of cytokine-dependent myeloid and erythroid cells.

Oncogene. 20(31):4198-208
Christian, S., Ahorn, H., Koehler, A., Eisenhaber, F., Rodi, HP., Garin-Chesa, P., Park, JE., Rettig, WJ., Lenter, MC. (2001)

Molecular cloning and characterization of endosialin, a C-type lectin-like cell surface receptor of tumor endothelium.

J Biol Chem. 276(10):7408-14
Nutt, SL., Eberhard, D., Horcher, M., Rolink, AG., Busslinger, M. (2001)

Pax5 determines the identity of B cells from the beginning to the end of B-lymphopoiesis.

Int Rev Immunol. 20(1):65-82
O'Carroll, D., Erhardt, S., Pagani, M., Barton, SC., Surani, MA., Jenuwein, T. (2001)

The polycomb-group gene Ezh2 is required for early mouse development.

Mol Cell Biol. 21(13):4330-6
Wagner, EF. (2001)

AP-1--Introductory remarks.

Oncogene. 20(19):2334-5
Jallepalli, PV., Waizenegger, IC., Bunz, F., Langer, S., Speicher, MR., Peters, JM., Kinzler, KW., Vogelstein, B., Lengauer, C. (2001)

Securin is required for chromosomal stability in human cells.

Cell. 105(4):445-57
Alexandru, G., Uhlmann, F., Mechtler, K., Poupart, MA., Nasmyth, K. (2001)

Phosphorylation of the cohesin subunit Scc1 by Polo/Cdc5 kinase regulates sister chromatid separation in yeast.

Cell. 105(4):459-72
Pasierbek, P., Jantsch, M., Melcher, M., Schleiffer, A., Schweizer, D., Loidl, J. (2001)

A Caenorhabditis elegans cohesion protein with functions in meiotic chromosome pairing and disjunction.

Genes Dev. 15(11):1349-60
Jochum, W., Passegué, E., Wagner, EF. (2001)

AP-1 in mouse development and tumorigenesis.

Oncogene. 20(19):2401-12
Dolznig, H., Boulmé, F., Stangl, K., Deiner, EM., Mikulits, W., Beug, H., Müllner, EW. (2001)

Establishment of normal, terminally differentiating mouse erythroid progenitors: molecular characterization by cDNA arrays.

FASEB J. 15(8):1442-4
Sørensen, CS., Lukas, C., Kramer, ER., Peters, JM., Bartek, J., Lukas, J. (2001)

A conserved cyclin-binding domain determines functional interplay between anaphase-promoting complex-Cdh1 and cyclin A-Cdk2 during cell cycle progression.

Mol Cell Biol. 21(11):3692-703
Tan, PK., Michou, AI., Bergelson, JM., Cotten, M. (2001)

Defining CAR as a cellular receptor for the avian adenovirus CELO using a genetic analysis of the two viral fibre proteins.

J Gen Virol. 82(Pt 6):1465-1472
Reimann, JD., Freed, E., Hsu, JY., Kramer, ER., Peters, JM., Jackson, PK. (2001)

Emi1 is a mitotic regulator that interacts with Cdc20 and inhibits the anaphase promoting complex.

Cell. 105(5):645-55
Wutz, A., Theussl, HC., Dausman, J., Jaenisch, R., Barlow, DP., Wagner, EF. (2001)

Non-imprinted Igf2r expression decreases growth and rescues the Tme mutation in mice.

Development. 128(10):1881-7
Diebold, SS., Cotten, M., Koch, N., Zenke, M. (2001)

MHC class II presentation of endogenously expressed antigens by transfected dendritic cells.

Gene Ther. 8(6):487-93
Sabapathy, K., Kallunki, T., David, JP., Graef, I., Karin, M., Wagner, EF. (2001)

c-Jun NH2-terminal kinase (JNK)1 and JNK2 have similar and stage-dependent roles in regulating T cell apoptosis and proliferation.

J Exp Med. 193(3):317-28
Jesenberger, V., Procyk, KJ., Rüth, J., Schreiber, M., Theussl, HC., Wagner, EF., Baccarini, M. (2001)

Protective role of Raf-1 in Salmonella-induced macrophage apoptosis.

J Exp Med. 193(3):353-64
Dickson, BJ., Cline, H., Polleux, F., Ghosh, A. (2001)

Making connections. Meeting: axon guidance and neural plasticity.

EMBO Rep. 2(3):182-6
Gieffers, C., Dube, P., Harris, JR., Stark, H., Peters, JM. (2001)

Three-dimensional structure of the anaphase-promoting complex.

Mol Cell. 7(4):907-13
Tapon, N., Ito, N., Dickson, BJ., Treisman, JE., Hariharan, IK. (2001)

The Drosophila tuberous sclerosis complex gene homologs restrict cell growth and cell proliferation.

Cell. 105(3):345-55
Wunderlich, W., Fialka, I., Teis, D., Alpi, A., Pfeifer, A., Parton, RG., Lottspeich, F., Huber, LA. (2001)

A novel 14-kilodalton protein interacts with the mitogen-activated protein kinase scaffold mp1 on a late endosomal/lysosomal compartment.

J Cell Biol. 152(4):765-76
Mikula, M., Schreiber, M., Husak, Z., Kucerova, L., Rüth, J., Wieser, R., Zatloukal, K., Beug, H., Wagner, EF., Baccarini, M. (2001)

Embryonic lethality and fetal liver apoptosis in mice lacking the c-raf-1 gene.

EMBO J. 20(8):1952-62
Rao, H., Uhlmann, F., Nasmyth, K., Varshavsky, A. (2001)

Degradation of a cohesin subunit by the N-end rule pathway is essential for chromosome stability.

Nature. 410(6831):955-9
Impagnatiello, MA., Weitzer, S., Gannon, G., Compagni, A., Cotten, M., Christofori, G. (2001)

Mammalian sprouty-1 and -2 are membrane-anchored phosphoprotein inhibitors of growth factor signaling in endothelial cells.

J Cell Biol. 152(5):1087-98
Dickson, BJ. (2001)

Rho GTPases in growth cone guidance.

Curr Opin Neurobiol. 11(1):103-10
Behrens, A., Sabapathy, K., Graef, I., Cleary, M., Crabtree, GR., Wagner, EF. (2001)

Jun N-terminal kinase 2 modulates thymocyte apoptosis and T cell activation through c-Jun and nuclear factor of activated T cell (NF-AT).

Proc Natl Acad Sci U S A. 98(4):1769-74
Mandriota, SJ., Jussila, L., Jeltsch, M., Compagni, A., Baetens, D., Prevo, R., Banerji, S., Huarte, J., Montesano, R., Jackson, DG., Orci, L., Alitalo, K., Christofori, G., Pepper, MS. (2001)

Vascular endothelial growth factor-C-mediated lymphangiogenesis promotes tumour metastasis.

EMBO J. 20(4):672-82
Lachner, M., O'Carroll, D., Rea, S., Mechtler, K., Jenuwein, T. (2001)

Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins.

Nature. 410(6824):116-20
Glotzer, JB., Michou, AI., Baker, A., Saltik, M., Cotten, M. (2001)

Microtubule-independent motility and nuclear targeting of adenoviruses with fluorescently labeled genomes.

J Virol. 75(5):2421-34
Passegué, E., Jochum, W., Schorpp-Kistner, M., Möhle-Steinlein, U., Wagner, EF. (2001)

Chronic myeloid leukemia with increased granulocyte progenitors in mice lacking junB expression in the myeloid lineage.

Cell. 104(1):21-32
Dickson, BJ. (2001)

Developmental neuroscience. Moving on.

Science. 291(5510):1910-1
Petronczki, M., Knoblich, JA. (2001)

DmPAR-6 directs epithelial polarity and asymmetric cell division of neuroblasts in Drosophila.

Nat Cell Biol. 3(1):43-9
Herzig, M., Christofori, G. (2001)

E-cadherin

Cancer Research, an Encyclopedic Reference (Schwab, M., ed.). :277-281
Horcher, M., Eberhard, D., Busslinger, M. (2001)

The role of PAX5 (BSAP) in early and late B-cell development.

Transcription Factors: Normal and Malignant Development of Blood Cells (Ravid, K., Licht, Jd., eds.). :217-228
Bauer, A., Gandrillon, O., Samarut, J., Beug, H. (2001)

Nuclear receptors in hematopoietic development: cooperation with growth factor receptors in regulation of proliferation and differentiation.

Hematopoiesis. A developmental approach (Zon, L., ed.). :368-390
Weitzman, JB., Fiette, L., Matsuo, K., Yaniv, M. (2000)

JunD protects cells from p53-dependent senescence and apoptosis.

Mol Cell. 6(5):1109-19
Cavallaro, U., Christofori, G. (2000)

Molecular mechanisms of tumor angiogenesis and tumor progression.

J Neurooncol. 50(1-2):63-70
Panizza, S., Tanaka, T., Hochwagen, A., Eisenhaber, F., Nasmyth, K. (2000)

Pds5 cooperates with cohesin in maintaining sister chromatid cohesion.

Curr Biol. 10(24):1557-64
Velloso, CP., Kumar, A., Tanaka, EM., Brockes, JP. (2000)

Generation of mononucleate cells from post-mitotic myotubes proceeds in the absence of cell cycle progression.

Differentiation. 66(4-5):239-46
Huber, LA., Fialka, I., Paiha, K., Hunziker, W., Sacks, DB., Bähler, M., Way, M., Gagescu, R., Gruenberg, J. (2000)

Both calmodulin and the unconventional myosin Myr4 regulate membrane trafficking along the recycling pathway of MDCK cells.

Traffic. 1(6):494-503
Mayr, B., Resch, S., Hepperle, S., Brem, G., Reifinger, M., Schaffner, G. (2000)

Comparative studies in the promoter and exon 1 regions of tumour suppressor p53 in several mammalian species: absence of mutations in a panel of spontaneous domestic animal tumours.

J Vet Med A Physiol Pathol Clin Med. 47(10):593-7
Rajagopalan, S., Vivancos, V., Nicolas, E., Dickson, BJ. (2000)

Selecting a longitudinal pathway: Robo receptors specify the lateral position of axons in the Drosophila CNS.

Cell. 103(7):1033-45
Tóth, A., Rabitsch, KP., Gálová, M., Schleiffer, A., Buonomo, SB., Nasmyth, K. (2000)

Functional genomics identifies monopolin: a kinetochore protein required for segregation of homologs during meiosis i.

Cell. 103(7):1155-68
Rajagopalan, S., Nicolas, E., Vivancos, V., Berger, J., Dickson, BJ. (2000)

Crossing the midline: roles and regulation of Robo receptors.

Neuron. 28(3):767-77
Compagni, A., Wilgenbus, P., Impagnatiello, MA., Cotten, M., Christofori, G. (2000)

Fibroblast growth factors are required for efficient tumor angiogenesis.

Cancer Res. 60(24):7163-9
Knoblich, JA. (2000)

Epithelial polarity: the ins and outs of the fly epidermis.

Curr Biol. 10(21):R791-4
Heumann, R., Goemans, C., Bartsch, D., Lingenhöhl, K., Waldmeier, PC., Hengerer, B., Allegrini, PR., Schellander, K., Wagner, EF., Arendt, T., Kamdem, RH., Obst-Pernberg, K., Narz, F., Wahle, P., Berns, H. (2000)

Transgenic activation of Ras in neurons promotes hypertrophy and protects from lesion-induced degeneration.

J Cell Biol. 151(7):1537-48
Petritsch, C., Beug, H., Balmain, A., Oft, M. (2000)

TGF-beta inhibits p70 S6 kinase via protein phosphatase 2A to induce G(1) arrest.

Genes Dev. 14(24):3093-101
Shaulian, E., Schreiber, M., Piu, F., Beeche, M., Wagner, EF., Karin, M. (2000)

The mammalian UV response: c-Jun induction is required for exit from p53-imposed growth arrest.

Cell. 103(6):897-907
O'Carroll, D., Scherthan, H., Peters, AH., Opravil, S., Haynes, AR., Laible, G., Rea, S., Schmid, M., Lebersorger, A., Jerratsch, M., Sattler, L., Mattei, MG., Denny, P., Brown, SD., Schweizer, D., Jenuwein, T. (2000)

Isolation and characterization of Suv39h2, a second histone H3 methyltransferase gene that displays testis-specific expression.

Mol Cell Biol. 20(24):9423-33
Schreiber, M., Wang, ZQ., Jochum, W., Fetka, I., Elliott, C., Wagner, EF. (2000)

Placental vascularisation requires the AP-1 component fra1.

Development. 127(22):4937-48
Gagescu, R., Demaurex, N., Parton, RG., Hunziker, W., Huber, LA., Gruenberg, J. (2000)

The recycling endosome of Madin-Darby canine kidney cells is a mildly acidic compartment rich in raft components.

Mol Biol Cell. 11(8):2775-91
Dürauer, A., Csaszar, E., Mechtler, K., Jungbauer, A., Schmid, E. (2000)

Characterisation of the rubber elongation factor from ammoniated latex by electrophoresis and mass spectrometry.

J Chromatogr A. 890(1):145-58
Groten, T., Kreienberg, R., Fialka, I., Huber, L., Wedlich, D. (2000)

Altered subcellular distribution of cadherin-5 in endothelial cells caused by the serum of pre-eclamptic patients.

Mol Hum Reprod. 6(11):1027-32
Sumara, I., Vorlaufer, E., Gieffers, C., Peters, BH., Peters, JM. (2000)

Characterization of vertebrate cohesin complexes and their regulation in prophase.

J Cell Biol. 151(4):749-62
von Lindern, M., Parren-van Amelsvoort, M., van Dijk, T., Deiner, E., van den Akker, E., van Emst-de Vries, S., Willems, P., Beug, H., Löwenberg, B. (2000)

Protein kinase C alpha controls erythropoietin receptor signaling.

J Biol Chem. 275(44):34719-27
Fleischmann, A., Hafezi, F., Elliott, C., Remé, CE., Rüther, U., Wagner, EF. (2000)

Fra-1 replaces c-Fos-dependent functions in mice.

Genes Dev. 14(21):2695-700
Tomonaga, T., Nagao, K., Kawasaki, Y., Furuya, K., Murakami, A., Morishita, J., Yuasa, T., Sutani, T., Kearsey, SE., Uhlmann, F., Nasmyth, K., Yanagida, M. (2000)

Characterization of fission yeast cohesin: essential anaphase proteolysis of Rad21 phosphorylated in the S phase.

Genes Dev. 14(21):2757-70
Rolink, AG., Schaniel, C., Busslinger, M., Nutt, SL., Melchers, F. (2000)

Fidelity and infidelity in commitment to B-lymphocyte lineage development.

Immunol Rev. 175:104-11
Uhlmann, F., Wernic, D., Poupart, MA., Koonin, EV., Nasmyth, K. (2000)

Cleavage of cohesin by the CD clan protease separin triggers anaphase in yeast.

Cell. 103(3):375-86
Buonomo, SB., Clyne, RK., Fuchs, J., Loidl, J., Uhlmann, F., Nasmyth, K. (2000)

Disjunction of homologous chromosomes in meiosis I depends on proteolytic cleavage of the meiotic cohesin Rec8 by separin.

Cell. 103(3):387-98
Waizenegger, IC., Hauf, S., Meinke, A., Peters, JM. (2000)

Two distinct pathways remove mammalian cohesin from chromosome arms in prophase and from centromeres in anaphase.

Cell. 103(3):399-410
Lehmann, K., Janda, E., Pierreux, CE., Rytömaa, M., Schulze, A., McMahon, M., Hill, CS., Beug, H., Downward, J. (2000)

Raf induces TGFbeta production while blocking its apoptotic but not invasive responses: a mechanism leading to increased malignancy in epithelial cells.

Genes Dev. 14(20):2610-22
McMorrow, T., van den Wijngaard, A., Wollenschlaeger, A., van de Corput, M., Monkhorst, K., Trimborn, T., Fraser, P., van Lohuizen, M., Jenuwein, T., Djabali, M., Philipsen, S., Grosveld, F., Milot, E. (2000)

Activation of the beta globin locus by transcription factors and chromatin modifiers.

EMBO J. 19(18):4986-96
Kaitna, S., Mendoza, M., Jantsch-Plunger, V., Glotzer, M. (2000)

Incenp and an aurora-like kinase form a complex essential for chromosome segregation and efficient completion of cytokinesis.

Curr Biol. 10(19):1172-81
Sorensen, CS., Lukas, C., Kramer, ER., Peters, JM., Bartek, J., Lukas, J. (2000)

Nonperiodic activity of the human anaphase-promoting complex-Cdh1 ubiquitin ligase results in continuous DNA synthesis uncoupled from mitosis.

Mol Cell Biol. 20(20):7613-23
Tanaka, T., Fuchs, J., Loidl, J., Nasmyth, K. (2000)

Cohesin ensures bipolar attachment of microtubules to sister centromeres and resists their precocious separation.

Nat Cell Biol. 2(8):492-9
Petersen, BO., Wagener, C., Marinoni, F., Kramer, ER., Melixetian, M., Lazzerini Denchi, E., Gieffers, C., Matteucci, C., Peters, JM., Helin, K. (2000)

Cell cycle- and cell growth-regulated proteolysis of mammalian CDC6 is dependent on APC-CDH1.

Genes Dev. 14(18):2330-43
Glotzer, JB., Saltik, M., Chiocca, S., Michou, AI., Moseley, P., Cotten, M. (2000)

Activation of heat-shock response by an adenovirus is essential for virus replication.

Nature. 407(6801):207-11
Bouchard, M., Pfeffer, P., Busslinger, M. (2000)

Functional equivalence of the transcription factors Pax2 and Pax5 in mouse development.

Development. 127(17):3703-13
Jochum, W., David, JP., Elliott, C., Wutz, A., Plenk, H., Matsuo, K., Wagner, EF. (2000)

Increased bone formation and osteosclerosis in mice overexpressing the transcription factor Fra-1.

Nat Med. 6(9):980-4
Mikulits, W., Schranzhofer, M., Deiner, EM., Beug, H., Müllner, EW. (2000)

Regulation of ferritin mRNA translation in primary erythroblasts: exogenous c-Kit plus EpoR signaling mimics v-ErbA oncoprotein activity.

Biochem Biophys Res Commun. 275(2):292-4
Urnov, FD., Yee, J., Sachs, L., Collingwood, TN., Bauer, A., Beug, H., Shi, YB., Wolffe, AP. (2000)

Targeting of N-CoR and histone deacetylase 3 by the oncoprotein v-erbA yields a chromatin infrastructure-dependent transcriptional repression pathway.

EMBO J. 19(15):4074-90
Eisenhaber, B., Bork, P., Yuan, Y., Löffler, G., Eisenhaber, F. (2000)

Automated annotation of GPI anchor sites: case study C. elegans.

Trends Biochem Sci. 25(7):340-1
Rea, S., Eisenhaber, F., O'Carroll, D., Strahl, BD., Sun, ZW., Schmid, M., Opravil, S., Mechtler, K., Ponting, CP., Allis, CD., Jenuwein, T. (2000)

Regulation of chromatin structure by site-specific histone H3 methyltransferases.

Nature. 406(6796):593-9
Sibilia, M., Fleischmann, A., Behrens, A., Stingl, L., Carroll, J., Watt, FM., Schlessinger, J., Wagner, EF. (2000)

The EGF receptor provides an essential survival signal for SOS-dependent skin tumor development.

Cell. 102(2):211-20
Lean, JM., Matsuo, K., Fox, SW., Fuller, K., Gibson, FM., Draycott, G., Wani, MR., Bayley, KE., Wong, BR., Choi, Y., Wagner, EF., Chambers, TJ. (2000)

Osteoclast lineage commitment of bone marrow precursors through expression of membrane-bound TRANCE.

Bone. 27(1):29-40
Gmachl, M., Gieffers, C., Podtelejnikov, AV., Mann, M., Peters, JM. (2000)

The RING-H2 finger protein APC11 and the E2 enzyme UBC4 are sufficient to ubiquitinate substrates of the anaphase-promoting complex.

Proc Natl Acad Sci U S A. 97(16):8973-8
Mikulits, W., Pradet-Balade, B., Habermann, B., Beug, H., Garcia-Sanz, JA., Müllner, EW. (2000)

Isolation of translationally controlled mRNAs by differential screening.

FASEB J. 14(11):1641-52
Kramer, ER., Scheuringer, N., Podtelejnikov, AV., Mann, M., Peters, JM. (2000)

Mitotic regulation of the APC activator proteins CDC20 and CDH1.

Mol Biol Cell. 11(5):1555-69
Jantsch-Plunger, V., Gönczy, P., Romano, A., Schnabel, H., Hamill, D., Schnabel, R., Hyman, AA., Glotzer, M. (2000)

CYK-4: A Rho family gtpase activating protein (GAP) required for central spindle formation and cytokinesis.

J Cell Biol. 149(7):1391-404
Dickson, BJ. (2000)

Genetics. Reverse gear for Drosophila.

Nature. 405(6789):896-7
Compagni, A., Christofori, G. (2000)

Recent advances in research on multistage tumorigenesis.

Br J Cancer. 83(1):1-5
Ciosk, R., Shirayama, M., Shevchenko, A., Tanaka, T., Toth, A., Shevchenko, A., Nasmyth, K. (2000)

Cohesin's binding to chromosomes depends on a separate complex consisting of Scc2 and Scc4 proteins.

Mol Cell. 5(2):243-54
Senti, K., Keleman, K., Eisenhaber, F., Dickson, BJ. (2000)

brakeless is required for lamina targeting of R1-R6 axons in the Drosophila visual system.

Development. 127(11):2291-301
Ghysdael, J., Tran Quang, C., Deiner, EM., Dolznig, H., Müllner, EW., Beug, H. (2000)

Erythroid cell development and leukemic transformation: interplay between signal transduction, cell cycle control and oncogenes.

Pathol Biol (Paris). 48(3):211-26
Newsome, TP., Schmidt, S., Dietzl, G., Keleman, K., Asling, B., Debant, A., Dickson, BJ. (2000)

Trio combines with dock to regulate Pak activity during photoreceptor axon pathfinding in Drosophila.

Cell. 101(3):283-94
Tagaya, H., Kunisada, T., Yamazaki, H., Yamane, T., Tokuhisa, T., Wagner, EF., Sudo, T., Shultz, LD., Hayashi, SI. (2000)

Intramedullary and extramedullary B lymphopoiesis in osteopetrotic mice.

Blood. 95(11):3363-70
Behrens, A., Jochum, W., Sibilia, M., Wagner, EF. (2000)

Oncogenic transformation by ras and fos is mediated by c-Jun N-terminal phosphorylation.

Oncogene. 19(22):2657-63
Eberhard, D., Jiménez, G., Heavey, B., Busslinger, M. (2000)

Transcriptional repression by Pax5 (BSAP) through interaction with corepressors of the Groucho family.

EMBO J. 19(10):2292-303
Nasmyth, K., Peters, JM., Uhlmann, F. (2000)

Splitting the chromosome: cutting the ties that bind sister chromatids.

Science. 288(5470):1379-85
Boehmelt, G., Fialka, I., Brothers, G., McGinley, MD., Patterson, SD., Mo, R., Hui, CC., Chung, S., Huber, LA., Mak, TW., Iscove, NN. (2000)

Cloning and characterization of the murine glucosamine-6-phosphate acetyltransferase EMeg32. Differential expression and intracellular membrane association.

J Biol Chem. 275(17):12821-32
Ogris, M., Wagner, E., Steinlein, P. (2000)

A versatile assay to study cellular uptake of gene transfer complexes by flow cytometry.

Biochim Biophys Acta. 1474(2):237-43
Busslinger, M., Nutt, SL., Rolink, AG. (2000)

Lineage commitment in lymphopoiesis.

Curr Opin Immunol. 12(2):151-8
Melcher, M., Schmid, M., Aagaard, L., Selenko, P., Laible, G., Jenuwein, T. (2000)

Structure-function analysis of SUV39H1 reveals a dominant role in heterochromatin organization, chromosome segregation, and mitotic progression.

Mol Cell Biol. 20(10):3728-41
Schaefer, M., Shevchenko, A., Shevchenko, A., Knoblich, JA. (2000)

A protein complex containing Inscuteable and the Galpha-binding protein Pins orients asymmetric cell divisions in Drosophila.

Curr Biol. 10(7):353-62
Oliferenko, S., Kaverina, I., Small, JV., Huber, LA. (2000)

Hyaluronic acid (HA) binding to CD44 activates Rac1 and induces lamellipodia outgrowth.

J Cell Biol. 148(6):1159-64
Haigh, JJ., Gerber, HP., Ferrara, N., Wagner, EF. (2000)

Conditional inactivation of VEGF-A in areas of collagen2a1 expression results in embryonic lethality in the heterozygous state.

Development. 127(7):1445-53
Mayr, B., Blauensteiner, J., Edlinger, A., Reifinger, M., Alton, K., Schaffner, G., Brem, G. (2000)

Presence of p53 mutations in feline neoplasms.

Res Vet Sci. 68(1):63-70
Revy, P., Busslinger, M., Tashiro, K., Arenzana, F., Pillet, P., Fischer, A., Durandy, A. (2000)

A syndrome involving intrauterine growth retardation, microcephaly, cerebellar hypoplasia, B lymphocyte deficiency, and progressive pancytopenia.

Pediatrics. 105(3):E39
Brunner, S., Sauer, T., Carotta, S., Cotten, M., Saltik, M., Wagner, E. (2000)

Cell cycle dependence of gene transfer by lipoplex, polyplex and recombinant adenovirus.

Gene Ther. 7(5):401-7
Newsome, TP., Asling, B., Dickson, BJ. (2000)

Analysis of Drosophila photoreceptor axon guidance in eye-specific mosaics.

Development. 127(4):851-60
Matsuo, K., Owens, JM., Tonko, M., Elliott, C., Chambers, TJ., Wagner, EF. (2000)

Fosl1 is a transcriptional target of c-Fos during osteoclast differentiation.

Nat Genet. 24(2):184-7
Kieslinger, M., Woldman, I., Moriggl, R., Hofmann, J., Marine, JC., Ihle, JN., Beug, H., Decker, T. (2000)

Antiapoptotic activity of Stat5 required during terminal stages of myeloid differentiation.

Genes Dev. 14(2):232-44
Kolbus, A., Herr, I., Schreiber, M., Debatin, KM., Wagner, EF., Angel, P. (2000)

c-Jun-dependent CD95-L expression is a rate-limiting step in the induction of apoptosis by alkylating agents.

Mol Cell Biol. 20(2):575-82
Gieffers, C., Schleiffer, A., Peters, JM. (2000)

Cullins and cell cycle control.

Protoplasma. 211:20-28
Hochedlinger, K., Wagner, EF. (2000)

The puzzle of size control in organisms.

B.I.F. Futura. 15:81-90
Rolink, A., Nutt, S., Busslinger, M., ten Boekel, E., Seidl, T., Andersson, J., Melchers, F. (1999)

Differentiation, dedifferentiation, and redifferentiation of B-lineage lymphocytes: roles of the surrogate light chain and the Pax5 gene.

Cold Spring Harb Symp Quant Biol. 64:21-5
Nutt, SL., Rolink, AG., Busslinger, M. (1999)

The molecular basis of B-cell lineage commitment.

Cold Spring Harb Symp Quant Biol. 64:51-9
Jochum, W., Passegue, E., Wagner, EF. (1999)

[Loss of junB expression causes a myeloproliferative syndrome resembling chronic myeloid leukemia].

Verh Dtsch Ges Pathol. 83:216-7
Sabapathy, K., Jochum, W., Hochedlinger, K., Chang, L., Karin, M., Wagner, EF. (1999)

Defective neural tube morphogenesis and altered apoptosis in the absence of both JNK1 and JNK2.

Mech Dev. 89(1-2):115-24
Shirayama, M., Tóth, A., Gálová, M., Nasmyth, K. (1999)

APC(Cdc20) promotes exit from mitosis by destroying the anaphase inhibitor Pds1 and cyclin Clb5.

Nature. 402(6758):203-7
Fuhrmann, G., Rosenberger, G., Grusch, M., Klein, N., Hofmann, J., Krupitza, G. (1999)

The MYC dualism in growth and death.

Mutat Res. 437(3):205-17
Mikulits, W., Schranzhofer, M., Beug, H., Müllner, EW. (1999)

Post-transcriptional control via iron-responsive elements: the impact of aberrations in hereditary disease.

Mutat Res. 437(3):219-30
Mikulits, W., Schranzhofer, M., Bauer, A., Dolznig, H., Lobmayr, L., Infante, AA., Beug, H., Müllner, EW. (1999)

Impaired ferritin mRNA translation in primary erythroid progenitors: shift to iron-dependent regulation by the v-ErbA oncoprotein.

Blood. 94(12):4321-32
Bauer, A., Tronche, F., Wessely, O., Kellendonk, C., Reichardt, HM., Steinlein, P., Schütz, G., Beug, H. (1999)

The glucocorticoid receptor is required for stress erythropoiesis.

Genes Dev. 13(22):2996-3002
Kozmik, Z., Pfeffer, P., Kralova, J., Paces, J., Paces, V., Kalousova, A., Cvekl, A. (1999)

Molecular cloning and expression of the human and mouse homologues of the Drosophila dachshund gene.

Dev Genes Evol. 209(9):537-45
Schober, M., Schaefer, M., Knoblich, JA. (1999)

Bazooka recruits Inscuteable to orient asymmetric cell divisions in Drosophila neuroblasts.

Nature. 402(6761):548-51
Minowada, G., Jarvis, LA., Chi, CL., Neubüser, A., Sun, X., Hacohen, N., Krasnow, MA., Martin, GR. (1999)

Vertebrate Sprouty genes are induced by FGF signaling and can cause chondrodysplasia when overexpressed.

Development. 126(20):4465-75
Beedles, KE., Sharpe, PT., Wagner, EF., Grigoriadis, AE. (1999)

A putative role for c-Fos in the pathophysiology of Paget's disease.

J Bone Miner Res. 14 Suppl 2:21-8
Glotzer, M. (1999)

Chromosome segregation: Samurai separation of Siamese sisters.

Curr Biol. 9(14):R531-4
Lukas, C., Sørensen, CS., Kramer, E., Santoni-Rugiu, E., Lindeneg, C., Peters, JM., Bartek, J., Lukas, J. (1999)

Accumulation of cyclin B1 requires E2F and cyclin-A-dependent rearrangement of the anaphase-promoting complex.

Nature. 401(6755):815-8
Tanaka, EM., Drechsel, DN., Brockes, JP. (1999)

Thrombin regulates S-phase re-entry by cultured newt myotubes.

Curr Biol. 9(15):792-9
Nutt, SL., Heavey, B., Rolink, AG., Busslinger, M. (1999)

Commitment to the B-lymphoid lineage depends on the transcription factor Pax5.

Nature. 401(6753):556-62
Rolink, AG., Nutt, SL., Melchers, F., Busslinger, M. (1999)

Long-term in vivo reconstitution of T-cell development by Pax5-deficient B-cell progenitors.

Nature. 401(6753):603-6
Eisenhaber, B., Bork, P., Eisenhaber, F. (1999)

Prediction of potential GPI-modification sites in proprotein sequences.

J Mol Biol. 292(3):741-58
Gieffers, C., Peters, BH., Kramer, ER., Dotti, CG., Peters, JM. (1999)

Expression of the CDH1-associated form of the anaphase-promoting complex in postmitotic neurons.

Proc Natl Acad Sci U S A. 96(20):11317-22
Tanaka, T., Cosma, MP., Wirth, K., Nasmyth, K. (1999)

Identification of cohesin association sites at centromeres and along chromosome arms.

Cell. 98(6):847-58
Fialka, I., Steinlein, P., Ahorn, H., Böck, G., Burbelo, PD., Haberfellner, M., Lottspeich, F., Paiha, K., Pasquali, C., Huber, LA. (1999)

Identification of syntenin as a protein of the apical early endocytic compartment in Madin-Darby canine kidney cells.

J Biol Chem. 274(37):26233-9
Zachariae, W., Nasmyth, K. (1999)

Whose end is destruction: cell division and the anaphase-promoting complex.

Genes Dev. 13(16):2039-58
Knop, M., Siegers, K., Pereira, G., Zachariae, W., Winsor, B., Nasmyth, K., Schiebel, E. (1999)

Epitope tagging of yeast genes using a PCR-based strategy: more tags and improved practical routines.

Yeast. 15(10B):963-72
Oliferenko, S., Paiha, K., Harder, T., Gerke, V., Schwärzler, C., Schwarz, H., Beug, H., Günthert, U., Huber, LA. (1999)

Analysis of CD44-containing lipid rafts: Recruitment of annexin II and stabilization by the actin cytoskeleton.

J Cell Biol. 146(4):843-54
Matsuo, K., Jochum, W., Owens, JM., Chambers, TJ., Wagner, EF. (1999)

Function of Fos proteins in bone cell differentiation.

Bone. 25(1):141
Burtscher, I., Compagni, A., Lamm, GM., Christofori, G. (1999)

An insulin-like growth factor-mediated, phosphatidylinositol 3' kinase-independent survival signaling pathway in beta tumor cells.

Cancer Res. 59(16):3923-6
Novák, B., Tóth, A., Csikász-Nagy, A., Györffy, B., Tyson, JJ., Nasmyth, K. (1999)

Finishing the cell cycle.

J Theor Biol. 199(2):223-33
Lehrmann, H., Cotten, M. (1999)

Characterization of CELO virus proteins that modulate the pRb/E2F pathway.

J Virol. 73(8):6517-25
Mühlner, U., Möhle-Steinlein, U., Wizigmann-Voos, S., Christofori, G., Risau, W., Wagner, EF. (1999)

Formation of transformed endothelial cells in the absence of VEGFR-2/Flk-1 by Polyoma middle T oncogene.

Oncogene. 18(29):4200-10
Klein, F., Mahr, P., Galova, M., Buonomo, SB., Michaelis, C., Nairz, K., Nasmyth, K. (1999)

A central role for cohesins in sister chromatid cohesion, formation of axial elements, and recombination during yeast meiosis.

Cell. 98(1):91-103
Seol, JH., Feldman, RM., Zachariae, W., Shevchenko, A., Correll, CC., Lyapina, S., Chi, Y., Galova, M., Claypool, J., Sandmeyer, S., Nasmyth, K., Deshaies, RJ., Shevchenko, A., Deshaies, RJ. (1999)

Cdc53/cullin and the essential Hrt1 RING-H2 subunit of SCF define a ubiquitin ligase module that activates the E2 enzyme Cdc34.

Genes Dev. 13(12):1614-26
von Lindern, M., Zauner, W., Mellitzer, G., Steinlein, P., Fritsch, G., Huber, K., Löwenberg, B., Beug, H. (1999)

The glucocorticoid receptor cooperates with the erythropoietin receptor and c-Kit to enhance and sustain proliferation of erythroid progenitors in vitro.

Blood. 94(2):550-9
Schwarz, M., Alvarez-Bolado, G., Dressler, G., Urbánek, P., Busslinger, M., Gruss, P. (1999)

Pax2/5 and Pax6 subdivide the early neural tube into three domains.

Mech Dev. 82(1-2):29-39
Diebold, SS., Kursa, M., Wagner, E., Cotten, M., Zenke, M. (1999)

Mannose polyethylenimine conjugates for targeted DNA delivery into dendritic cells.

J Biol Chem. 274(27):19087-94
Uhlmann, F., Lottspeich, F., Nasmyth, K. (1999)

Sister-chromatid separation at anaphase onset is promoted by cleavage of the cohesin subunit Scc1.

Nature. 400(6739):37-42
Alexandru, G., Zachariae, W., Schleiffer, A., Nasmyth, K. (1999)

Sister chromatid separation and chromosome re-duplication are regulated by different mechanisms in response to spindle damage.

EMBO J. 18(10):2707-21
Eferl, R., Sibilia, M., Hilberg, F., Fuchsbichler, A., Kufferath, I., Guertl, B., Zenz, R., Wagner, EF., Zatloukal, K. (1999)

Functions of c-Jun in liver and heart development.

J Cell Biol. 145(5):1049-61
De Graeve, F., Bahr, A., Sabapathy, KT., Hauss, C., Wagner, EF., Kedinger, C., Chatton, B. (1999)

Role of the ATFa/JNK2 complex in Jun activation.

Oncogene. 18(23):3491-500
Jansen, MW., von Lindern, M., Beug, H., Brandenburg, H., Wildschut, HI., Wladimiroff, JW., In 't Veld, PA. (1999)

The use of in vitro expanded erythroid cells in a model system for the isolation of fetal cells from maternal blood.

Prenat Diagn. 19(4):323-9
Koch, C., Staffler, G., Hüttinger, R., Hilgert, I., Prager, E., Cerný, J., Steinlein, P., Majdic, O., Horejsí, V., Stockinger, H. (1999)

T cell activation-associated epitopes of CD147 in regulation of the T cell response, and their definition by antibody affinity and antigen density.

Int Immunol. 11(5):777-86
Schreiber, S., Kämpgen, E., Wagner, E., Pirkhammer, D., Trcka, J., Korschan, H., Lindemann, A., Dorffner, R., Kittler, H., Kasteliz, F., Küpcü, Z., Sinski, A., Zatloukal, K., Buschle, M., Schmidt, W., Birnstiel, M., Kempe, RE., Voigt, T., Weber, HA., Pehamberger, H., Mertelsmann, R., Bröcker, EB., Wolff, K., Stingl, G. (1999)

Immunotherapy of metastatic malignant melanoma by a vaccine consisting of autologous interleukin 2-transfected cancer cells: outcome of a phase I study.

Hum Gene Ther. 10(6):983-93
Fialka, I., Pasquali, C., Kurzbauer, R., Lottspeich, F., Huber, LA. (1999)

Loss of epithelial polarity is accompanied by differential association of proteins with intracellular membranes.

Electrophoresis. 20(2):331-43
Grossberger, R., Gieffers, C., Zachariae, W., Podtelejnikov, AV., Schleiffer, A., Nasmyth, K., Mann, M., Peters, JM. (1999)

Characterization of the DOC1/APC10 subunit of the yeast and the human anaphase-promoting complex.

J Biol Chem. 274(20):14500-7
Auer, H., Warncke, K., Nowak, D., Koops, F., Jaeger, U., Kurzbauer, R., Ruediger, HW. (1999)

Variations of p53 in cultured fibroblasts of patients with lung cancer who have a presumed genetic predisposition.

Am J Clin Oncol. 22(3):278-82
Diebold, SS., Lehrmann, H., Kursa, M., Wagner, E., Cotten, M., Zenke, M. (1999)

Efficient gene delivery into human dendritic cells by adenovirus polyethylenimine and mannose polyethylenimine transfection.

Hum Gene Ther. 10(5):775-86
Nasmyth, K. (1999)

Separating sister chromatids.

Trends Biochem Sci. 24(3):98-104
Wessely, O., Bauer, A., Quang, CT., Deiner, EM., von Lindern, M., Mellitzer, G., Steinlein, P., Ghysdael, J., Beug, H. (1999)

A novel way to induce erythroid progenitor self renewal: cooperation of c-Kit with the erythropoietin receptor.

Biol Chem. 380(2):187-202
Herzig, M., Novatchkova, M., Christofori, G. (1999)

An unexpected role for p53 in augmenting SV40 large T antigen-mediated tumorigenesis.

Biol Chem. 380(2):203-11
Lawtrakul, L., Hannongbua, S., Beyer, A., Wolschann, P. (1999)

Conformational study of the HIV-1 reverse transcriptase inhibitor 1-[(2-hydroxyethoxy)methyl]-6-(phenylthio)thymine (HEPT).

Biol Chem. 380(2):265-7
Bischof, J., Vietor, I., Cotten, M., Huber, LA. (1999)

Transient transfection of mammary epithelial cells with a PEI/DNA/adenovirus system.

Biol Chem. 380(2):269-73
Gonzalez, I., Buonomo, SB., Nasmyth, K., von Ahsen, U. (1999)

ASH1 mRNA localization in yeast involves multiple secondary structural elements and Ash1 protein translation.

Curr Biol. 9(6):337-40
Aagaard, L., Laible, G., Selenko, P., Schmid, M., Dorn, R., Schotta, G., Kuhfittig, S., Wolf, A., Lebersorger, A., Singh, PB., Reuter, G., Jenuwein, T. (1999)

Functional mammalian homologues of the Drosophila PEV-modifier Su(var)3-9 encode centromere-associated proteins which complex with the heterochromatin component M31.

EMBO J. 18(7):1923-38
Peters, JM. (1999)

Subunits and substrates of the anaphase-promoting complex.

Exp Cell Res. 248(2):339-49
Tropepe, V., Sibilia, M., Ciruna, BG., Rossant, J., Wagner, EF., van der Kooy, D. (1999)

Distinct neural stem cells proliferate in response to EGF and FGF in the developing mouse telencephalon.

Dev Biol. 208(1):166-88
Pasquali, C., Fialka, I., Huber, LA. (1999)

Subcellular fractionation, electromigration analysis and mapping of organelles.

J Chromatogr B Biomed Sci Appl. 722(1-2):89-102
Schreiber, M., Kolbus, A., Piu, F., Szabowski, A., Möhle-Steinlein, U., Tian, J., Karin, M., Angel, P., Wagner, EF. (1999)

Control of cell cycle progression by c-Jun is p53 dependent.

Genes Dev. 13(5):607-19
Christofori, G., Semb, H. (1999)

The role of the cell-adhesion molecule E-cadherin as a tumour-suppressor gene.

Trends Biochem Sci. 24(2):73-6
Owens, JM., Matsuo, K., Nicholson, GC., Wagner, EF., Chambers, TJ. (1999)

Fra-1 potentiates osteoclastic differentiation in osteoclast-macrophage precursor cell lines.

J Cell Physiol. 179(2):170-8
Schorpp-Kistner, M., Wang, ZQ., Angel, P., Wagner, EF. (1999)

JunB is essential for mammalian placentation.

EMBO J. 18(4):934-48
Nutt, SL., Vambrie, S., Steinlein, P., Kozmik, Z., Rolink, A., Weith, A., Busslinger, M. (1999)

Independent regulation of the two Pax5 alleles during B-cell development.

Nat Genet. 21(4):390-5
Czerny, T., Halder, G., Kloter, U., Souabni, A., Gehring, WJ., Busslinger, M. (1999)

twin of eyeless, a second Pax-6 gene of Drosophila, acts upstream of eyeless in the control of eye development.

Mol Cell. 3(3):297-307
Pereira, R., Quang, CT., Lesault, I., Dolznig, H., Beug, H., Ghysdael, J. (1999)

FLI-1 inhibits differentiation and induces proliferation of primary erythroblasts.

Oncogene. 18(8):1597-608
Eberhard, D., Busslinger, M. (1999)

The partial homeodomain of the transcription factor Pax-5 (BSAP) is an interaction motif for the retinoblastoma and TATA-binding proteins.

Cancer Res. 59(7 Suppl):1716s-1724s; discussion 1724s-1725s
Perl, AK., Dahl, U., Wilgenbus, P., Cremer, H., Semb, H., Christofori, G. (1999)

Reduced expression of neural cell adhesion molecule induces metastatic dissemination of pancreatic beta tumor cells.

Nat Med. 5(3):286-91
Burkart, V., Wang, ZQ., Radons, J., Heller, B., Herceg, Z., Stingl, L., Wagner, EF., Kolb, H. (1999)

Mice lacking the poly(ADP-ribose) polymerase gene are resistant to pancreatic beta-cell destruction and diabetes development induced by streptozocin.

Nat Med. 5(3):314-9
Tóth, A., Ciosk, R., Uhlmann, F., Galova, M., Schleiffer, A., Nasmyth, K. (1999)

Yeast cohesin complex requires a conserved protein, Eco1p(Ctf7), to establish cohesion between sister chromatids during DNA replication.

Genes Dev. 13(3):320-33
Lucas, T., Krugluger, W., Samorapoompichit, P., Gamperl, R., Beug, H., Förster, O., Boltz-Nitulescu, G. (1999)

Self-renewal, maturation, and differentiation of the rat myelomonocytic hematopoietic stem cell.

FASEB J. 13(2):263-72
Behrens, A., Sibilia, M., Wagner, EF. (1999)

Amino-terminal phosphorylation of c-Jun regulates stress-induced apoptosis and cellular proliferation.

Nat Genet. 21(3):326-9
Sabapathy, K., Hu, Y., Kallunki, T., Schreiber, M., David, JP., Jochum, W., Wagner, EF., Karin, M. (1999)

JNK2 is required for efficient T-cell activation and apoptosis but not for normal lymphocyte development.

Curr Biol. 9(3):116-25
Laible, G., Haynes, AR., Lebersorger, A., O'Carroll, D., Mattei, MG., Denny, P., Brown, SD., Jenuwein, T. (1999)

The murine polycomb-group genes Ezh1 and Ezh2 map close to Hox gene clusters on mouse chromosomes 11 and 6.

Mamm Genome. 10(3):311-4
Karl, T., Onder, K., Kodzius, R., Pichová, A., Wimmer, H., Th r, A., Hundsberger, H., Löffler, M., Klade, T., Beyer, A., Breitenbach, M., Koller, L. (1999)

GRC5 and NMD3 function in translational control of gene expression and interact genetically.

Curr Genet. 34(6):419-29
Esni, F., Täljedal, IB., Perl, AK., Cremer, H., Christofori, G., Semb, H. (1999)

Neural cell adhesion molecule (N-CAM) is required for cell type segregation and normal ultrastructure in pancreatic islets.

J Cell Biol. 144(2):325-37
Michou, AI., Lehrmann, H., Saltik, M., Cotten, M. (1999)

Mutational analysis of the avian adenovirus CELO, which provides a basis for gene delivery vectors.

J Virol. 73(2):1399-410
Burtscher, I., Christofori, G. (1999)

The IGF/IGF-1 receptor signaling pathway as a potential target for cancer therapy.

Drug Resist Updat. 2(1):3-8
Eisenhaber, F. (1999)

Hydrophobic regions on protein surfaces.

Perspectives in Drug Discovery and Design. v. 17(N1):27-42
Fialka, I., Huber, LA. (1999)

Endocytic organelles: Methods for preparation.

Encyclopedia of Life Sciences (www.els.net).
Lawtrakul, L., Hannongbua, S., Beyer, A., Wolschann, P. (1999)

Molecular calculations on the conformation of the HIV-1 reverse transcriptase inhibitor 1-[(2-Hydroxyethoxy)methyl]-6-[phenylthio]-thymine [HEPT].

Monatshefte für Chemie. 130:1347-63
Eisenhaber F. (1999)

Getting informed in bioinformatics

Trends in Cell Biology. 9:289
Cotten, M., Wagner, E. (1999)

Receptor-mediated gene delivery strategies.

The Development of Human Gene Therapy (ed. Friedmann, T.). :261-77
Vlodavsky, I., Christofori, G. (1999)

Fibroblast growth factors in tumor progression and angiogenesis.

Antiangiogenic Agents in Cancer Therapy (ed. Teicher, BA.). :83-118
Wagner, EF., Wang, ZQ. (1999)

Genetically modified mice as tolls for cancer research.

Development-Genetics, Epigenetics and Environmental Regulation (eds. Russo, D., Cove, L., Edgar, R., Jaenisch, Salamini, F.. :471-85
Christofori, G. (1998)

The implications of angiogenesis on tumor invasiveness.

Angiogenesis. 2(1):21-3
Novak, B., Csikasz-Nagy, A., Gyorffy, B., Nasmyth, K., Tyson, JJ. (1998)

Model scenarios for evolution of the eukaryotic cell cycle.

Philos Trans R Soc Lond B Biol Sci. 353(1378):2063-76
Diebold, SS., Cotten, M., Wagner, E., Zenke, M. (1998)

Gene-modified dendritic cells by receptor-mediated transfection.

Adv Exp Med Biol. 451:449-55
Ogris, M., Steinlein, P., Kursa, M., Mechtler, K., Kircheis, R., Wagner, E. (1998)

The size of DNA/transferrin-PEI complexes is an important factor for gene expression in cultured cells.

Gene Ther. 5(10):1425-33
Ciana, P., Braliou, GG., Demay, FG., von Lindern, M., Barettino, D., Beug, H., Stunnenberg, HG. (1998)

Leukemic transformation by the v-ErbA oncoprotein entails constitutive binding to and repression of an erythroid enhancer in vivo.

EMBO J. 17(24):7382-94
Peters, JM. (1998)

SCF and APC: the Yin and Yang of cell cycle regulated proteolysis.

Curr Opin Cell Biol. 10(6):759-68
Mosleh, IM., Huber, LA., Steinlein, P., Pasquali, C., Günther, D., Meyer, TF. (1998)

Neisseria gonorrhoeae porin modulates phagosome maturation.

J Biol Chem. 273(52):35332-8
Semb, H., Christofori, G. (1998)

The tumor-suppressor function of E-cadherin.

Am J Hum Genet. 63(6):1588-93
Kramer, ER., Gieffers, C., Hölzl, G., Hengstschläger, M., Peters, JM. (1998)

Activation of the human anaphase-promoting complex by proteins of the CDC20/Fizzy family.

Curr Biol. 8(22):1207-10
Vorlaufer, E., Peters, JM. (1998)

Regulation of the cyclin B degradation system by an inhibitor of mitotic proteolysis.

Mol Biol Cell. 9(7):1817-31
Uhlmann, F., Nasmyth, K. (1998)

Cohesion between sister chromatids must be established during DNA replication.

Curr Biol. 8(20):1095-101
Tanaka, EM., Brockes, JP. (1998)

A target of thrombin activation promotes cell cycle re-entry by urodele muscle cells.

Wound Repair Regen. 6(4):371-81
Morrison, AM., Jäger, U., Chott, A., Schebesta, M., Haas, OA., Busslinger, M. (1998)

Deregulated PAX-5 transcription from a translocated IgH promoter in marginal zone lymphoma.

Blood. 92(10):3865-78
Oft, M., Heider, KH., Beug, H. (1998)

TGFbeta signaling is necessary for carcinoma cell invasiveness and metastasis.

Curr Biol. 8(23):1243-52
Zachariae, W., Schwab, M., Nasmyth, K., Seufert, W. (1998)

Control of cyclin ubiquitination by CDK-regulated binding of Hct1 to the anaphase promoting complex.

Science. 282(5394):1721-4
Dahl, R., Kieslinger, M., Beug, H., Hayman, MJ. (1998)

Transformation of hematopoietic cells by the Ski oncoprotein involves repression of retinoic acid receptor signaling.

Proc Natl Acad Sci U S A. 95(19):11187-92
Mayr, B., Reifinger, M., Alton, K., Schaffner, G. (1998)

Novel p53 tumour suppressor mutations in cases of spindle cell sarcoma, pleomorphic sarcoma and fibrosarcoma in cats.

Vet Res Commun. 22(4):249-55
Bennett, DC., Trayner, ID., Piao, X., Easty, DJ., Klüppel, M., Alexander, WS., Wagner, EF., Bernstein, A. (1998)

recessive spotting: a linked locus that interacts with W/Kit but is not allelic.

Genes Cells. 3(4):235-44
Thévenin, C., Nutt, SL., Busslinger, M. (1998)

Early function of Pax5 (BSAP) before the pre-B cell receptor stage of B lymphopoiesis.

J Exp Med. 188(4):735-44
Onyango, P., Lubyova, B., Gardellin, P., Kurzbauer, R., Weith, A. (1998)

Molecular cloning and expression analysis of five novel genes in chromosome 1p36.

Genomics. 50(2):187-98
Pfeffer, PL., Gerster, T., Lun, K., Brand, M., Busslinger, M. (1998)

Characterization of three novel members of the zebrafish Pax2/5/8 family: dependency of Pax5 and Pax8 expression on the Pax2.1 (noi) function.

Development. 125(16):3063-74
Bauer, A., Mikulits, W., Lagger, G., Stengl, G., Brosch, G., Beug, H. (1998)

The thyroid hormone receptor functions as a ligand-operated developmental switch between proliferation and differentiation of erythroid progenitors.

EMBO J. 17(15):4291-303
Morrison, AM., Nutt, SL., Thévenin, C., Rolink, A., Busslinger, M. (1998)

Loss- and gain-of-function mutations reveal an important role of BSAP (Pax-5) at the start and end of B cell differentiation.

Semin Immunol. 10(2):133-42
Ciosk, R., Zachariae, W., Michaelis, C., Shevchenko, A., Mann, M., Nasmyth, K. (1998)

An ESP1/PDS1 complex regulates loss of sister chromatid cohesion at the metaphase to anaphase transition in yeast.

Cell. 93(6):1067-76
Nutt, SL., Morrison, AM., Dörfler, P., Rolink, A., Busslinger, M. (1998)

Identification of BSAP (Pax-5) target genes in early B-cell development by loss- and gain-of-function experiments.

EMBO J. 17(8):2319-33
Macchia, PE., Lapi, P., Krude, H., Pirro, MT., Missero, C., Chiovato, L., Souabni, A., Baserga, M., Tassi, V., Pinchera, A., Fenzi, G., Grüters, A., Busslinger, M., Di Lauro, R. (1998)

PAX8 mutations associated with congenital hypothyroidism caused by thyroid dysgenesis.

Nat Genet. 19(1):83-6
Olmsted, EA., Gannon, FH., Wang, ZQ., Grigoriadis, AE., Wagner, EF., Zasloff, MA., Shore, EM., Kaplan, FS. (1998)

Embryonic overexpression of the c-Fos protooncogene. A murine stem cell chimera applicable to the study of fibrodysplasia ossificans progressiva in humans.

Clin Orthop Relat Res. (346):81-94
Perl, AK., Wilgenbus, P., Dahl, U., Semb, H., Christofori, G. (1998)

A causal role for E-cadherin in the transition from adenoma to carcinoma.

Nature. 392(6672):190-3
Zachariae, W., Shevchenko, A., Andrews, PD., Ciosk, R., Galova, M., Stark, MJ., Mann, M., Nasmyth, K. (1998)

Mass spectrometric analysis of the anaphase-promoting complex from yeast: identification of a subunit related to cullins.

Science. 279(5354):1216-9
Yu, H., Peters, JM., King, RW., Page, AM., Hieter, P., Kirschner, MW. (1998)

Identification of a cullin homology region in a subunit of the anaphase-promoting complex.

Science. 279(5354):1219-22
Sibilia, M., Steinbach, JP., Stingl, L., Aguzzi, A., Wagner, EF. (1998)

A strain-independent postnatal neurodegeneration in mice lacking the EGF receptor.

EMBO J. 17(3):719-31
Jenuwein, T., Laible, G., Dorn, R., Reuter, G. (1998)

SET domain proteins modulate chromatin domains in eu- and heterochromatin.

Cell Mol Life Sci. 54(1):80-93
Glotzer, M., Knoblich, JA. (1998)

Cell multiplication - editorial overview.

Current Opinion in Cell Biology. 10:739-41
Cotten, M., Saltik, M., Baker, A. (1998)

Transfection complexes generated with adenovirus and polyethylenimine-condensed DNA.

Methods in Molecular Biology; Adenovirus Methods and Protocols (ed. Wold, WSM.). :295-307
Busslinger, M., Nutt, SL. (1998)

Role of the transcription factor BSAP [Pax-5] in B-cell development.

Molecular Biology of B-Cell and T-Cell Development (eds. Monroe, JG., Rothenberg, EV.). :83-110
Huber, LA., Simons, K. (1998)

Preparation and purification of post-golgi vesicles from perforated Madin-Darby Canine Kidney Cells.

Cell Biology - A Laboratory Handbook (ed. Celis, JE.). 1:56-62
Buschle, M., Schmidt, W., Berger, M., Schaffner, G., Kurzbauer, R., Killisch, I., Tiedemann, JK., Trska, B., Kirlappos, H., Mechtler, K., Schilcher, F., Gabler, C., Birnstiel, ML. (1998)

Chemically defined, cell-free cancer vaccines: use of tumor antigen-derived peptides or polyepitope proteins for vaccination.

Gene Therapy and Molecular Biology. 1:309-21
Wagner, EF. (1998)

Oncogene function in normal development and disease.

OECD Proceedings. :201-7
Peters, JM., King, RW., Deshaies, RJ. (1998)

Cell cycle control by ubiquitin-dependent proteolysis.

Ubiquitin and the biology of the cell (eds. Peters, JM., Harris, JR., Finley, D.). :345-87
Fialka, I., Oft, M., Reichmann, E., Huber, LA., Beug, H. (1998)

Three-dimensional organotypic growth of epithelial cells in reconstituted extracellular matrix.

Cell Biology - A Laboratory Handbook (ed. Celis, JE.). 1:107-12
Löffler, G. (1998)

A multithreaded Java framework for solving linear elliptic partial differential equations in 3D.

Lecture Notes in Computer Science. 1343:121-8
Böck, G., Steinlein, P., Huber, LA. (1997)

Cell biologists sort things out: Analysis and purification of intracellular organelles by flow cytometry.

Trends Cell Biol. 7(12):499-503
Scianimanico, S., Pasquali, C., Lavoie, J., Huber, LA., Gorvel, JP., Desjardins, M. (1997)

Two-dimensional gel electrophoresis analysis of endovacuolar organelles.

Electrophoresis. 18(14):2566-72
Pasquali, C., Fialka, I., Huber, LA. (1997)

Preparative two-dimensional gel electrophoresis of membrane proteins.

Electrophoresis. 18(14):2573-81
Fialka, I., Pasquali, C., Lottspeich, F., Ahorn, H., Huber, LA. (1997)

Subcellular fractionation of polarized epithelial cells and identification of organelle-specific proteins by two-dimensional gel electrophoresis.

Electrophoresis. 18(14):2582-90
Taylor, RS., Fialka, I., Jones, SM., Huber, LA., Howell, KE. (1997)

Two-dimensional mapping of the endogenous proteins of the rat hepatocyte Golgi complex cleared of proteins in transit.

Electrophoresis. 18(14):2601-12
Nutt, SL., Thévenin, C., Busslinger, M. (1997)

Essential functions of Pax-5 (BSAP) in pro-B cell development.

Immunobiology. 198(1-3):227-35
Long, RM., Singer, RH., Meng, X., Gonzalez, I., Nasmyth, K., Jansen, RP. (1997)

Mating type switching in yeast controlled by asymmetric localization of ASH1 mRNA.

Science. 277(5324):383-7
Glotzer, M. (1997)

The mechanism and control of cytokinesis.

Curr Opin Cell Biol. 9(6):815-23
Knoblich, JA. (1997)

Mechanisms of asymmetric cell division during animal development.

Curr Opin Cell Biol. 9(6):833-41
Hunt, T., Nasmyth, K. (1997)

Cell multiplication.

Curr Opin Cell Biol. 9(6):765-7
Schwarz, M., Alvarez-Bolado, G., Urbánek, P., Busslinger, M., Gruss, P. (1997)

Conserved biological function between Pax-2 and Pax-5 in midbrain and cerebellum development: evidence from targeted mutations.

Proc Natl Acad Sci U S A. 94(26):14518-23
Vietor, I., Huber, LA. (1997)

In search of differentially expressed genes and proteins.

Biochim Biophys Acta. 1359(3):187-99
Lamm, GM., Steinlein, P., Cotten, M., Christofori, G. (1997)

A rapid, quantitative and inexpensive method for detecting apoptosis by flow cytometry in transiently transfected cells.

Nucleic Acids Res. 25(23):4855-7
Morrison, C., Smith, GC., Stingl, L., Jackson, SP., Wagner, EF., Wang, ZQ. (1997)

Genetic interaction between PARP and DNA-PK in V(D)J recombination and tumorigenesis.

Nat Genet. 17(4):479-82
Sabapathy, K., Klemm, M., Jaenisch, R., Wagner, EF. (1997)

Regulation of ES cell differentiation by functional and conformational modulation of p53.

EMBO J. 16(20):6217-29
Pichler, S., Piatti, S., Nasmyth, K. (1997)

Is the yeast anaphase promoting complex needed to prevent re-replication during G2 and M phases?

EMBO J. 16(19):5988-97
Baker, A., Saltik, M., Lehrmann, H., Killisch, I., Mautner, V., Lamm, G., Christofori, G., Cotten, M. (1997)

Polyethylenimine (PEI) is a simple, inexpensive and effective reagent for condensing and linking plasmid DNA to adenovirus for gene delivery.

Gene Ther. 4(8):773-82
Michaelis, C., Ciosk, R., Nasmyth, K. (1997)

Cohesins: chromosomal proteins that prevent premature separation of sister chromatids.

Cell. 91(1):35-45
Wutz, A., Smrzka, OW., Schweifer, N., Schellander, K., Wagner, EF., Barlow, DP. (1997)

Imprinted expression of the Igf2r gene depends on an intronic CpG island.

Nature. 389(6652):745-9
Breiteneder-Geleff, S., Matsui, K., Soleiman, A., Meraner, P., Poczewski, H., Kalt, R., Schaffner, G., Kerjaschki, D. (1997)

Podoplanin, novel 43-kd membrane protein of glomerular epithelial cells, is down-regulated in puromycin nephrosis.

Am J Pathol. 151(4):1141-52
Talsma, H., Cherng, J., Lehrmann, H., Kursa, M., Ogris, M., Hennink, WE., Cotten, M., Wagner, E. (1997)

Stabilization of gene delivery systems by freeze-drying.

Int J Pharm. 157(2):233-238
Fuchs, B., Wagner, T., Rössel, N., Antoine, M., Beug, H., Niessing, J. (1997)

Structure and erythroid cell-restricted expression of a chicken cDNA encoding a novel zinc finger protein of the Cys + His class.

Gene. 195(2):277-84
Wang, ZQ., Stingl, L., Morrison, C., Jantsch, M., Los, M., Schulze-Osthoff, K., Wagner, EF. (1997)

PARP is important for genomic stability but dispensable in apoptosis.

Genes Dev. 11(18):2347-58
Tanaka, T., Knapp, D., Nasmyth, K. (1997)

Loading of an Mcm protein onto DNA replication origins is regulated by Cdc6p and CDKs.

Cell. 90(4):649-60
Wollenberg, B., Schmidt, W., Schmitt, B., Lang, S., Zeidler, R. (1997)

[Receptor mediated gene transfer in squamous epithelial carcinoma of the head-neck area].

Laryngorhinootologie. 76(7):411-4
Brandt, WF., Schwager, SU., Rodrigues, JA., Busslinger, M. (1997)

Isolation and amino acid sequence analysis reveal an ancient evolutionary origin of the cleavage stage (CS) histones of the sea urchin.

Eur J Biochem. 247(3):784-91
Schreiber, M., Poirier, C., Franchi, A., Kurzbauer, R., Guenet, JL., Carle, GF., Wagner, EF. (1997)

Structure and chromosomal assignment of the mouse fra-1 gene, and its exclusion as a candidate gene for oc (osteosclerosis).

Oncogene. 15(10):1171-8
Agarwal, ML., Agarwal, A., Taylor, WR., Wang, ZQ., Wagner, EF., Stark, GR. (1997)

Defective induction but normal activation and function of p53 in mouse cells lacking poly-ADP-ribose polymerase.

Oncogene. 15(9):1035-41
Wang, ZQ., Kiefer, F., Urbánek, P., Wagner, EF. (1997)

Generation of completely embryonic stem cell-derived mutant mice using tetraploid blastocyst injection.

Mech Dev. 62(2):137-45
Mayr, B., Schaffner, W., Botto, I., Reifinger, M., Loupal, G. (1997)

Canine tumour suppressor gene p53--mutation in a case of adenoma of circumanal glands.

Vet Res Commun. 21(5):369-73
Mikulits, W., Dolznig, H., Edelmann, H., Sauer, T., Deiner, EM., Ballou, L., Beug, H., Müllner, EW. (1997)

Dynamics of cell cycle regulators: artifact-free analysis by recultivation of cells synchronized by centrifugal elutriation.

DNA Cell Biol. 16(7):849-59
Bauer, A., Ulrich, E., Andersson, M., Beug, H., von Lindern, M. (1997)

Mechanism of transformation by v-ErbA: substitution for steroid hormone receptor function in self renewal induction.

Oncogene. 15(6):701-15
Wheatley, SP., Hinchcliffe, EH., Glotzer, M., Hyman, AA., Sluder, G., Wang, Yl. (1997)

CDK1 inactivation regulates anaphase spindle dynamics and cytokinesis in vivo.

J Cell Biol. 138(2):385-93
Nasmyth, K., Jansen, RP. (1997)

The cytoskeleton in mRNA localization and cell differentiation.

Curr Opin Cell Biol. 9(3):396-400
Woldman, I., Mellitzer, G., Kieslinger, M., Buchhart, D., Meinke, A., Beug, H., Decker, T. (1997)

STAT5 involvement in the differentiation response of primary chicken myeloid progenitor cells to chicken myelomonocytic growth factor.

J Immunol. 159(2):877-86
Laible, G., Wolf, A., Dorn, R., Reuter, G., Nislow, C., Lebersorger, A., Popkin, D., Pillus, L., Jenuwein, T. (1997)

Mammalian homologues of the Polycomb-group gene Enhancer of zeste mediate gene silencing in Drosophila heterochromatin and at S. cerevisiae telomeres.

EMBO J. 16(11):3219-32
Bauer, A., Hüttinger, R., Staffler, G., Hansmann, C., Schmidt, W., Majdic, O., Knapp, W., Stockinger, H. (1997)

Analysis of the requirement for beta 2-microglobulin for expression and formation of human CD1 antigens.

Eur J Immunol. 27(6):1366-73
Kichler, A., Mechtler, K., Behr, JP., Wagner, E. (1997)

Influence of membrane-active peptides on lipospermine/DNA complex mediated gene transfer.

Bioconjug Chem. 8(2):213-21
Stingl, G., Bröcker, EB., Mertelsmann, R., Wolff, K., Schreiber, S., Kämpgen, E., Schneeberger, A., Trcka, J., Brennscheidt, U., Veelken, H., Birnstiel, ML., Zatloukal, K., Maass, G., Wagner, E., Buschle, M., Kempe, ER., Weber, HA., Voigt, T. (1997)

Phase I study to the immunotherapy of metastatic malignant melanoma by a cancer vaccine consisting of autologous cancer cells transfected with the human IL-2 gene.

J Mol Med (Berl). 75(4):297-9
Wessely, O., Mellitzer, G., von Lindern, M., Levitzki, A., Gazit, A., Ischenko, I., Hayman, MJ., Beug, H. (1997)

Distinct roles of the receptor tyrosine kinases c-ErbB and c-Kit in regulating the balance between erythroid cell proliferation and differentiation.

Cell Growth Differ. 8(5):481-93
Schmidt, W., Maass, G., Buschle, M., Schweighoffer, T., Berger, M., Herbst, E., Schilcher, F., Birnstiel, ML. (1997)

Generation of effective cancer vaccines genetically engineered to secrete cytokines using adenovirus-enhanced transferrinfection (AVET).

Gene. 190(1):211-6
Thienes, CP., De Monte, L., Monticelli, S., Busslinger, M., Gould, HJ., Vercelli, D. (1997)

The transcription factor B cell-specific activator protein (BSAP) enhances both IL-4- and CD40-mediated activation of the human epsilon germline promoter.

J Immunol. 158(12):5874-82
Chlichlia, K., Busslinger, M., Peter, ME., Walczak, H., Krammer, PH., Schirrmacher, V., Khazaie, K. (1997)

ICE-proteases mediate HTLV-I Tax-induced apoptotic T-cell death.

Oncogene. 14(19):2265-72
Via, LE., Deretic, D., Ulmer, RJ., Hibler, NS., Huber, LA., Deretic, V. (1997)

Arrest of mycobacterial phagosome maturation is caused by a block in vesicle fusion between stages controlled by rab5 and rab7.

J Biol Chem. 272(20):13326-31
Sabapathy, KT., Pepper, MS., Kiefer, F., Möhle-Steinlein, U., Tacchini-Cottier, F., Fetka, I., Breier, G., Risau, W., Carmeliet, P., Montesano, R., Wagner, EF. (1997)

Polyoma middle T-induced vascular tumor formation: the role of the plasminogen activator/plasmin system.

J Cell Biol. 137(4):953-63
Urbánek, P., Fetka, I., Meisler, MH., Busslinger, M. (1997)

Cooperation of Pax2 and Pax5 in midbrain and cerebellum development.

Proc Natl Acad Sci U S A. 94(11):5703-8
Zirwes, RF., Kouzmenko, AP., Peters, JM., Franke, WW., Schmidt-Zachmann, MS. (1997)

Topogenesis of a nucleolar protein: determination of molecular segments directing nucleolar association.

Mol Biol Cell. 8(2):231-48
Xu, RM., Koch, C., Liu, Y., Horton, JR., Knapp, D., Nasmyth, K., Cheng, X. (1997)

Crystal structure of the DNA-binding domain of Mbp1, a transcription factor important in cell-cycle control of DNA synthesis.

Structure. 5(3):349-58
Novoa, I., Benavente, J., Cotten, M., Carrasco, L. (1997)

Permeabilization of mammalian cells to proteins: poliovirus 2A(pro) as a probe to analyze entry of proteins into cells.

Exp Cell Res. 232(1):186-90
McBride, HJ., Brazas, RM., Yu, Y., Nasmyth, K., Stillman, DJ. (1997)

Long-range interactions at the HO promoter.

Mol Cell Biol. 17(5):2669-78
De Monte, L., Thienes, CP., Monticelli, S., Busslinger, M., Gould, HJ., Vercelli, D. (1997)

Regulation of human epsilon germline transcription: role of B-cell-specific activator protein.

Int Arch Allergy Immunol. 113(1-3):35-8
Schmidt, W., Buschle, M., Zauner, W., Kirlappos, H., Mechtler, K., Trska, B., Birnstiel, ML. (1997)

Cell-free tumor antigen peptide-based cancer vaccines.

Proc Natl Acad Sci U S A. 94(7):3262-7
Buschle, M., Schmidt, W., Zauner, W., Mechtler, K., Trska, B., Kirlappos, H., Birnstiel, ML. (1997)

Transloading of tumor antigen-derived peptides into antigen-presenting cells.

Proc Natl Acad Sci U S A. 94(7):3256-61
Chiocca, S., Baker, A., Cotten, M. (1997)

Identification of a novel antiapoptotic protein, GAM-1, encoded by the CELO adenovirus.

J Virol. 71(4):3168-77
van't Hof, RJ., von Lindern, M., Nijweide, PJ., Beug, H. (1997)

Stem cell factor stimulates chicken osteoclast activity in vitro.

FASEB J. 11(4):287-93
Coll, JL., Wagner, E., Combaret, V., Metchler, K., Amstutz, H., Iacono-Di-Cacito, I., Simon, N., Favrot, MC. (1997)

In vitro targeting and specific transfection of human neuroblastoma cells by chCE7 antibody-mediated gene transfer.

Gene Ther. 4(2):156-61
Hafezi, F., Steinbach, JP., Marti, A., Munz, K., Wang, ZQ., Wagner, EF., Aguzzi, A., Remé, CE. (1997)

The absence of c-fos prevents light-induced apoptotic cell death of photoreceptors in retinal degeneration in vivo.

Nat Med. 3(3):346-9
Drechsel, DN., Hyman, AA., Hall, A., Glotzer, M. (1997)

A requirement for Rho and Cdc42 during cytokinesis in Xenopus embryos.

Curr Biol. 7(1):12-23
Juang, YL., Huang, J., Peters, JM., McLaughlin, ME., Tai, CY., Pellman, D. (1997)

APC-mediated proteolysis of Ase1 and the morphogenesis of the mitotic spindle.

Science. 275(5304):1311-4
Tanaka, EM., Gann, AA., Gates, PB., Brockes, JP. (1997)

Newt myotubes reenter the cell cycle by phosphorylation of the retinoblastoma protein.

J Cell Biol. 136(1):155-65
Jenuwein, T., Forrester, WC., Fernández-Herrero, LA., Laible, G., Dull, M., Grosschedl, R. (1997)

Extension of chromatin accessibility by nuclear matrix attachment regions.

Nature. 385(6613):269-72
Böck, G., Steinlein, P., Haberfellner, M., Gruenberg, J., Huber, LA. (1997)

Fluorescence activated sorting of endocytic organelles.

Cell Biology - a laboratory handbook. 2:63-69
Böck, G., Steinlein P., Huber, LA. (1997)

Cell Biologists sort things out: Analysis and purification of intracellular organelles by flow cytometry.

Trends Cell Biology. 7:499-503
Christofori, G. (1997)

The role of fibroblast growth factors in tumor progression and angiogenesis.

Tumour Angiogenesis (eds. Bicknell, R., Lewis, CE., Ferrara, N.). :201-38
Pepper, MS., Tacchini-Cottier, F., Sabapathy, K., Montesano, R., Wagner, EF. (1997)

Endothelial cells transformed by polyomavirus middle-T oncogene: A model for hemangiomas and other vascular tumors.

Tumour Angiogenesis (eds. Bicknell, R., Lewis, CE., Ferrara, N.). :309-31
Mechtler, K., Wagner, E. (1997)

Gene transfer mediated by influenza virus peptides: the role of peptide sequences.

New J. Chem.. 21:105-11
Odde, DJ., Tanaka, EM., Hawkins, SS., Buettner, HM. (1996)

Stochastic dynamics of the nerve growth cone and its microtubules during neurite outgrowth.

Biotechnol Bioeng. 50(4):452-61
Schweighoffer, T., Berger, M., Buschle, M., Schmidt, W., Birnstiel, ML. (1996)

Adenovirus-enhanced receptor-mediated transferrinfection for the generation of tumor vaccines.

Cytokines Mol Ther. 2(3):185-91
Huber, LA., Pasquali, C., Gagescu, R., Zuk, A., Gruenberg, J., Matlin, KS. (1996)

Endosomal fractions from viral K-ras-transformed MDCK cells reveal transformation specific changes on two-dimensional gel maps.

Electrophoresis. 17(11):1734-40
Huber, K., Wolf, H., Van Lindern, M., Worofka, B., Rosen, A., Hafner, E., Beug, H., Philipp, K., Bauer, K. (1996)

Development of a rapid means of estimating the haemoglobin F content of candidate fetal cells isolated from maternal blood using HPLC.

Prenat Diagn. 16(11):1011-9
Briegel, K., Bartunek, P., Stengl, G., Lim, KC., Beug, H., Engel, JD., Zenke, M. (1996)

Regulation and function of transcription factor GATA-1 during red blood cell differentiation.

Development. 122(12):3839-50
Nasmyth, K. (1996)

A homage to Giardia.

Curr Biol. 6(9):1042
Beug, H., Bauer, A., Dolznig, H., von Lindern, M., Lobmayer, L., Mellitzer, G., Steinlein, P., Wessely, O., Mullner, E. (1996)

Avian erythropoiesis and erythroleukemia: towards understanding the role of the biomolecules involved.

Biochim Biophys Acta. 1288(3):M35-47
Plank, C., Mechtler, K., Szoka, FC., Wagner, E. (1996)

Activation of the complement system by synthetic DNA complexes: a potential barrier for intravenous gene delivery.

Hum Gene Ther. 7(12):1437-46
Weith, A., Brodeur, GM., Bruns, GA., Matise, TC., Mischke, D., Nizetic, D., Seldin, MF., van Roy, N., Vance, J. (1996)

Report of the second international workshop on human chromosome 1 mapping 1995.

Cytogenet Cell Genet. 72(2-3):114-44
Schweighoffer, T. (1996)

Tumor cells expressing a recall antigen are powerful cancer vaccines.

Eur J Immunol. 26(11):2559-64
Nasmyth, K. (1996)

Viewpoint: putting the cell cycle in order.

Science. 274(5293):1643-5
Stiasny, K., Allison, SL., Marchler-Bauer, A., Kunz, C., Heinz, FX. (1996)

Structural requirements for low-pH-induced rearrangements in the envelope glycoprotein of tick-borne encephalitis virus.

J Virol. 70(11):8142-7
Müllner, EW., Dolznig, H., Beug, H. (1996)

Cell cycle regulation and erythroid differentiation.

Curr Top Microbiol Immunol. 212:175-94
Nasmyth, K. (1996)

At the heart of the budding yeast cell cycle.

Trends Genet. 12(10):405-12
Zachariae, W., Shin, TH., Galova, M., Obermaier, B., Nasmyth, K. (1996)

Identification of subunits of the anaphase-promoting complex of Saccharomyces cerevisiae.

Science. 274(5290):1201-4
Lamm, GM., Nicol, SM., Fuller-Pace, FV., Lamond, AI. (1996)

p72: a human nuclear DEAD box protein highly related to p68.

Nucleic Acids Res. 24(19):3739-47
Oft, M., Peli, J., Rudaz, C., Schwarz, H., Beug, H., Reichmann, E. (1996)

TGF-beta1 and Ha-Ras collaborate in modulating the phenotypic plasticity and invasiveness of epithelial tumor cells.

Genes Dev. 10(19):2462-77
Knapp, D., Bhoite, L., Stillman, DJ., Nasmyth, K. (1996)

The transcription factor Swi5 regulates expression of the cyclin kinase inhibitor p40SIC1.

Mol Cell Biol. 16(10):5701-7
Mellitzer, G., Wessely, O., Decker, T., Meinke, A., Hayman, MJ., Beug, H. (1996)

Activation of Stat 5b in erythroid progenitors correlates with the ability of ErbB to induce sustained cell proliferation.

Proc Natl Acad Sci U S A. 93(18):9600-5
Schmidt, W., Steinlein, P., Buschle, M., Schweighoffer, T., Herbst, E., Mechtler, K., Kirlappos, H., Birnstiel, ML. (1996)

Transloading of tumor cells with foreign major histocompatibility complex class I peptide ligand: a novel general strategy for the generation of potent cancer vaccines.

Proc Natl Acad Sci U S A. 93(18):9759-63
Bartůnĕk, P., Pichlíková, L., Stengl, G., Boehmelt, G., Martin, FH., Beug, H., Dvorák, M., Zenke, M. (1996)

Avian stem cell factor (SCF): production and characterization of the recombinant His-tagged SCF of chicken and its neutralizing antibody.

Cytokine. 8(1):14-20
Zauner, W., Kichler, A., Schmidt, W., Sinski, A., Wagner, E. (1996)

Glycerol enhancement of ligand-polylysine/DNA transfection.

Biotechniques. 20(5):905-13
Ellmeier, W., Barnas, C., Kobrna, A., Kleiner, E., Kurzbauer, R., Weith, A. (1996)

Cloning and characterization of CpG islands of the human chromosome 1p36 region.

Genomics. 32(1):155-8
Neumann, B., Barlow, DP. (1996)

Multiple roles for DNA methylation in gametic imprinting.

Curr Opin Genet Dev. 6(2):159-63
Parangi, S., O'Reilly, M., Christofori, G., Holmgren, L., Grosfeld, J., Folkman, J., Hanahan, D. (1996)

Antiangiogenic therapy of transgenic mice impairs de novo tumor growth.

Proc Natl Acad Sci U S A. 93(5):2002-7
Kovacech, B., Nasmyth, K., Schuster, T. (1996)

EGT2 gene transcription is induced predominantly by Swi5 in early G1.

Mol Cell Biol. 16(7):3264-74
Morrison, C., Wagner, E. (1996)

Extrachromosomal recombination occurs efficiently in cells defective in various DNA repair systems.

Nucleic Acids Res. 24(11):2053-8
Nasmyth, K. (1996)

Retinoblastoma protein. Another role rolls in.

Nature. 382(6586):28-9
Busslinger, M., Klix, N., Pfeffer, P., Graninger, PG., Kozmik, Z. (1996)

Deregulation of PAX-5 by translocation of the Emu enhancer of the IgH locus adjacent to two alternative PAX-5 promoters in a diffuse large-cell lymphoma.

Proc Natl Acad Sci U S A. 93(12):6129-34
Schorpp, M., Jäger, R., Schellander, K., Schenkel, J., Wagner, EF., Weiher, H., Angel, P. (1996)

The human ubiquitin C promoter directs high ubiquitous expression of transgenes in mice.

Nucleic Acids Res. 24(9):1787-8
Martínez-Pastor, MT., Marchler, G., Schüller, C., Marchler-Bauer, A., Ruis, H., Estruch, F. (1996)

The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE).

EMBO J. 15(9):2227-35
Jansen, RP., Dowzer, C., Michaelis, C., Galova, M., Nasmyth, K. (1996)

Mother cell-specific HO expression in budding yeast depends on the unconventional myosin myo4p and other cytoplasmic proteins.

Cell. 84(5):687-97
Chiocca, S., Kurzbauer, R., Schaffner, G., Baker, A., Mautner, V., Cotten, M. (1996)

The complete DNA sequence and genomic organization of the avian adenovirus CELO.

J Virol. 70(5):2939-49
Fialka, I., Schwarz, H., Reichmann, E., Oft, M., Busslinger, M., Beug, H. (1996)

The estrogen-dependent c-JunER protein causes a reversible loss of mammary epithelial cell polarity involving a destabilization of adherens junctions.

J Cell Biol. 132(6):1115-32
Czerny, T. (1996)

High primer concentration improves PCR amplification from random pools.

Nucleic Acids Res. 24(5):985-6
Bevec, D., Jaksche, H., Oft, M., Wöhl, T., Himmelspach, M., Pacher, A., Schebesta, M., Koettnitz, K., Dobrovnik, M., Csonga, R., Lottspeich, F., Hauber, J. (1996)

Inhibition of HIV-1 replication in lymphocytes by mutants of the Rev cofactor eIF-5A.

Science. 271(5257):1858-60
Beug, H., Metz, T., Müllner, EW., Hayman, MJ. (1996)

Self renewal and differentiation in primary avian hematopoietic cells: an alternative to mammalian in vitro models?

Curr Top Microbiol Immunol. 211:29-39
Edelmann, HM., Kühne, C., Petritsch, C., Ballou, LM. (1996)

Cell cycle regulation of p70 S6 kinase and p42/p44 mitogen-activated protein kinases in Swiss mouse 3T3 fibroblasts.

J Biol Chem. 271(2):963-71
Cocker, JH., Piatti, S., Santocanale, C., Nasmyth, K., Diffley, JF. (1996)

An essential role for the Cdc6 protein in forming the pre-replicative complexes of budding yeast.

Nature. 379(6561):180-2
Nasmyth, K. (1996)

Control of S phase

DNA Replication in Eukaryotic Cells. :331-86
Cotten, M., Baker, A., Saltik, M., Lehrmann, H., Panzenböck, B., Chiocca, S. (1996)

Receptor-mediated gene delivery.

Falk Symposium no. 88, Molecular Diagnosis and Gene Therapy.
Wagner, E., Cotten, M., Berger, M., Schmidt, W., Zauner, W., Buschle, T., Schweighoffer, T., Maass, G., Zatloukal, K., Schreiber, S., Stingl, G., Birnstiel, ML. (1996)

Adenovirus enhanced receptor mediated transferrinfection (AVET) applied to the generation of tumor vaccines.

OECD Biotechnology, Gene Delivery Systems, A state-of-the-Art Review. :153-62
Wagner, E., Cotten, M., Zatloukal, K. (1996)

Receptor-mediated gene delivery with synthetic virus-like particles.

Targeting of Drugs 5: Strategies for Oligonucleotide and Gene Delivery in Therapy (eds. Gregoriadis, McCormack).
Sjöberg, RM., Hallstenson, K., Nordling, M., Kogner, P. Gardellin, P., Lubyova, B., Onyango, P., Weith, A., Martinsson, T. (1996)

Analysis of location and integrity of the human PITSLRE (p58CDC2L1) genes in neuroblastoma cell genomes. evidence against involvement in tumorigenesis.

Int. J. Oncol.. 8:1137-42
Sibilia, M., Wagner, EF. (1996)

Transgenic animals.

European Review. 4:371-91
Schwob, E., Nasmyth, K. (1996)

Cell cycle control of DNA replication in Saccharomyces cerevisiae.

Eukaryotic DNA Replication - Frontiers in Molecular Biology - OUP. :165-96
Grigoriadis, AE., Wang, ZQ., Wagner, EF. (1996)

Regulation of bone cell differentiation and bone remodelling by the c-Fos/AP-1 transcription factor.

Principles of Bone Biology. :15-24
Chiocca, S., Cotten, M. (1996)

Cellular responses to adenovirus entry.

Gene Therapy for Diseases of the Lung (ed. Brigham, KL.).
Birnstiel, ML. (1996)

The genetic revolution 1950-1996: An introduction

European Review. 4:333-4
Birnstiel, ML. (1996)

Gene therapy.

European Review. 4:335-56
Busslinger, M., Urbánek, P. (1995)

The role of BSAP (Pax-5) in B-cell development.

Curr Opin Genet Dev. 5(5):595-601
Mayr, B., Schaffner, G., Kurzbauer, R., Schneider, A., Reifinger, M., Loupal, G. (1995)

Mutations in tumour suppressor gene p53 in two feline fibrosarcomas.

Br Vet J. 151(6):707-13
Smrzka, OW., Faé, I., Stöger, R., Kurzbauer, R., Fischer, GF., Henn, T., Weith, A., Barlow, DP. (1995)

Conservation of a maternal-specific methylation signal at the human IGF2R locus.

Hum Mol Genet. 4(10):1945-52
Barnas, CM., Onyango, P., Ellmeier, W., Lengauer, C., Kleiner, E., Henn, T., Brunner, C., Stapleton, P., Weith, A. (1995)

Determination and regional assignment of grouped sets of microclones in chromosome 1pter-p35.

Genomics. 29(3):607-15
Nasmyth, K. (1995)

Evolution of the cell cycle.

Philos Trans R Soc Lond B Biol Sci. 349(1329):271-81
Grigoriadis, AE., Wang, ZQ., Wagner, EF. (1995)

Fos and bone cell development: lessons from a nuclear oncogene.

Trends Genet. 11(11):436-41
Beug, H., Schroeder, C., Wessely, O., Deiner, E., Meyer, S., Ischenko, ID., Hayman, MJ. (1995)

Transformation of erythroid progenitors by viral and cellular tyrosine kinases.

Cell Growth Differ. 6(8):999-1008
Beug, H., Steinlein, P., Bartunek, P., Hayman, MJ. (1995)

Avian hematopoietic cell culture: in vitro model systems to study oncogenic transformation of hematopoietic cells.

Methods Enzymol. 254:41-76
Wang, ZQ., Liang, J., Schellander, K., Wagner, EF., Grigoriadis, AE. (1995)

c-fos-induced osteosarcoma formation in transgenic mice: cooperativity with c-jun and the role of endogenous c-fos.

Cancer Res. 55(24):6244-51
Barlow, DP. (1995)

Gametic imprinting in mammals.

Science. 270(5242):1610-3
Schreiber, M., Baumann, B., Cotten, M., Angel, P., Wagner, EF. (1995)

Fos is an essential component of the mammalian UV response.

EMBO J. 14(21):5338-49
Cotten, M., Weber, JM. (1995)

The adenovirus protease is required for virus entry into host cells.

Virology. 213(2):494-502
Auer, B., Flick, K., Wang, ZQ., Haidacher, D., Jäger, S., Berghammer, H., Kofler, B., Schweiger, M., Wagner, EF. (1995)

On the biological role of the nuclear polymerizing NAD+: protein(ADP-ribosyl) transferase (ADPRT): ADPRT from Dictyostelium discoideum and inactivation of the ADPRT gene in the mouse.

Biochimie. 77(6):444-9
Quang, CT., Pironin, M., von Lindern, M., Beug, H., Ghysdael, J. (1995)

Spi-1 and mutant p53 regulate different aspects of the proliferation and differentiation control of primary erythroid progenitors.

Oncogene. 11(7):1229-39
Tanaka, EM., Gann, AF. (1995)

Limb development. The budding role of FGF.

Curr Biol. 5(6):594-7
Buschle, M., Cotten, M., Kirlappos, H., Mechtler, K., Schaffner, G., Zauner, W., Birnstiel, ML., Wagner, E. (1995)

Receptor-mediated gene transfer into human T lymphocytes via binding of DNA/CD3 antibody particles to the CD3 T cell receptor complex.

Hum Gene Ther. 6(6):753-61
Derynck, R., Wagner, EF. (1995)

Cell differentiation.

Curr Opin Cell Biol. 7(6):843-4
Gack, S., Vallon, R., Schmidt, J., Grigoriadis, A., Tuckermann, J., Schenkel, J., Weiher, H., Wagner, EF., Angel, P. (1995)

Expression of interstitial collagenase during skeletal development of the mouse is restricted to osteoblast-like cells and hypertrophic chondrocytes.

Cell Growth Differ. 6(6):759-67
Ellmeier, W., Weith, A. (1995)

Expression of the helix-loop-helix gene Id3 during murine embryonic development.

Dev Dyn. 203(2):163-73
Maass, G., Schweighoffer, T., Berger, M., Schmidt, W., Herbst, E., Zatloukal, K., Buschle, M., Birnstiel, ML. (1995)

Tumor vaccines: effects and fate of IL-2 transfected murine melanoma cells in vivo.

Int J Immunopharmacol. 17(2):65-73
Cvrcková, F., De Virgilio, C., Manser, E., Pringle, JR., Nasmyth, K. (1995)

Ste20-like protein kinases are required for normal localization of cell growth and for cytokinesis in budding yeast.

Genes Dev. 9(15):1817-30
Mayr, B., Schaffner, G., Kurzbauer, R., Reifinger, M., Schellander, K. (1995)

Sequence of an exon of tumour suppressor p53 gene--a comparative study in domestic animals: mutation in a feline solid mammary carcinoma.

Br Vet J. 151(3):325-9
Pospiech, A., Neumann, B. (1995)

A versatile quick-prep of genomic DNA from gram-positive bacteria.

Trends Genet. 11(6):217-8
Beug, H., Dahl, R., Steinlein, P., Meyer, S., Deiner, EM., Hayman, MJ. (1995)

In vitro growth of factor-dependent multipotential hematopoietic cells is induced by the nuclear oncoprotein v-Ski.

Oncogene. 11(1):59-72
Sibilia, M., Wagner, EF. (1995)

Strain-dependent epithelial defects in mice lacking the EGF receptor.

Science. 269(5221):234-8
Petritsch, C., Woscholski, R., Edelmann, HM., Parker, PJ., Ballou, LM. (1995)

Selective inhibition of p70 S6 kinase activation by phosphatidylinositol 3-kinase inhibitors.

Eur J Biochem. 230(2):431-8
Vorechovský, I., Koskinen, S., Paganelli, R., Smith, CI., Busslinger, M., Hammarström, L. (1995)

The PAX5 gene: a linkage and mutation analysis in candidate human primary immunodeficiencies.

Immunogenetics. 42(2):149-52
Marino, S., Kretschmer, C., Brandner, S., Cavard, C., Zider, A., Briand, P., Isenmann, S., Wagner, EF., Aguzzi, A. (1995)

Activation of HIV transcription by human foamy virus in transgenic mice.

Lab Invest. 73(1):103-10
Bergers, G., Graninger, P., Braselmann, S., Wrighton, C., Busslinger, M. (1995)

Transcriptional activation of the fra-1 gene by AP-1 is mediated by regulatory sequences in the first intron.

Mol Cell Biol. 15(7):3748-58
von Rüden, T., Stingl, L., Cotten, M., Wagner, E., Zatloukal, K. (1995)

Generation of high-titer retroviral vectors following receptor-mediated, adenovirus-augmented transfection.

Biotechniques. 18(3):484-9
Maass, G., Schmidt, W., Berger, M., Schilcher, F., Koszik, F., Schneeberger, A., Stingl, G., Birnstiel, ML., Schweighoffer, T. (1995)

Priming of tumor-specific T cells in the draining lymph nodes after immunization with interleukin 2-secreting tumor cells: three consecutive stages may be required for successful tumor vaccination.

Proc Natl Acad Sci U S A. 92(12):5540-4
Kozmik, Z., Sure, U., Rüedi, D., Busslinger, M., Aguzzi, A. (1995)

Deregulated expression of PAX5 in medulloblastoma.

Proc Natl Acad Sci U S A. 92(12):5709-13
Maher, M., Cong, F., Kindelberger, D., Nasmyth, K., Dalton, S. (1995)

Cell cycle-regulated transcription of the CLB2 gene is dependent on Mcm1 and a ternary complex factor.

Mol Cell Biol. 15(6):3129-37
Schmidt, W., Schweighoffer, T., Herbst, E., Maass, G., Berger, M., Schilcher, F., Schaffner, G., Birnstiel, ML. (1995)

Cancer vaccines: the interleukin 2 dosage effect.

Proc Natl Acad Sci U S A. 92(10):4711-4
Heller, B., Wang, ZQ., Wagner, EF., Radons, J., Bürkle, A., Fehsel, K., Burkart, V., Kolb, H. (1995)

Inactivation of the poly(ADP-ribose) polymerase gene affects oxygen radical and nitric oxide toxicity in islet cells.

J Biol Chem. 270(19):11176-80
Steinlein, P., Wessely, O., Meyer, S., Deiner, EM., Hayman, MJ., Beug, H. (1995)

Primary, self-renewing erythroid progenitors develop through activation of both tyrosine kinase and steroid hormone receptors.

Curr Biol. 5(2):191-204
Muir, WJ., Gosden, CM., Brookes, AJ., Fantes, J., Evans, KL., Maguire, SM., Stevenson, B., Boyle, S., Blackwood, DH., St Clair, DM. (1995)

Direct microdissection and microcloning of a translocation breakpoint region, t(1;11)(q42.2;q21), associated with schizophrenia.

Cytogenet Cell Genet. 70(1-2):35-40
Irniger, S., Piatti, S., Michaelis, C., Nasmyth, K. (1995)

Genes involved in sister chromatid separation are needed for B-type cyclin proteolysis in budding yeast.

Cell. 81(2):269-78
López-Barahona, M., Fialka, I., González-Sancho, JM., Asunción, M., González, M., Iglesias, T., Bernal, J., Beug, H., Muñoz, A. (1995)

Thyroid hormone regulates stromelysin expression, protease secretion and the morphogenetic potential of normal polarized mammary epithelial cells.

EMBO J. 14(6):1145-55
Neumann, B., Kubicka, P., Barlow, DP. (1995)

Characteristics of imprinted genes.

Nat Genet. 9(1):12-3
Wang, ZQ., Auer, B., Stingl, L., Berghammer, H., Haidacher, D., Schweiger, M., Wagner, EF. (1995)

Mice lacking ADPRT and poly(ADP-ribosyl)ation develop normally but are susceptible to skin disease.

Genes Dev. 9(5):509-20
Zatloukal, K., Schneeberger, A., Berger, M., Schmidt, W., Koszik, F., Kutil, R., Cotten, M., Wagner, E., Buschle, M., Maass, G. (1995)

Elicitation of a systemic and protective anti-melanoma immune response by an IL-2-based vaccine. Assessment of critical cellular and molecular parameters.

J Immunol. 154(7):3406-19
Stapleton, P., Kozmik, Z., Weith, A., Busslinger, M. (1995)

The gene coding for the B cell surface protein CD19 is localized on human chromosome 16p11.

Hum Genet. 95(2):223-5
de Groot, RP., Schouten, GJ., de Wit, L., Ballou, LM., van der Eb, AJ., Zantema, A. (1995)

Induction of the mitogen-activated p70 S6 kinase by adenovirus E1A.

Oncogene. 10(3):543-8
Boehmelt, G., Madruga, J., Dörfler, P., Briegel, K., Schwarz, H., Enrietto, PJ., Zenke, M. (1995)

Dendritic cell progenitor is transformed by a conditional v-Rel estrogen receptor fusion protein v-RelER.

Cell. 80(2):341-52
Chlichlia, K., Moldenhauer, G., Daniel, PT., Busslinger, M., Gazzolo, L., Schirrmacher, V., Khazaie, K. (1995)

Immediate effects of reversible HTLV-1 tax function: T-cell activation and apoptosis.

Oncogene. 10(2):269-77
Brüsselbach, S., Möhle-Steinlein, U., Wang, ZQ., Schreiber, M., Lucibello, FC., Müller, R., Wagner, EF. (1995)

Cell proliferation and cell cycle progression are not impaired in fibroblasts and ES cells lacking c-Fos.

Oncogene. 10(1):79-86
Zauner, W., Blaas, D., Kuechler, E., Wagner, E. (1995)

Rhinovirus-mediated endosomal release of transfection complexes.

J Virol. 69(2):1085-92
Wutz, A., Smrzka, OW., Barlow, DP., Neumann, B. (1995)

Genomic imprinting: the parental connection.

Applied Cytogenetics. 21:145-52
Boehmelt, G., Stengl, G., Enrietto, PJ., Zenke, M. (1995)

v-rel protects transformed chicken bone marrow cells from apoptosis: A study with the conditional v-rel estrogen receptor fusion oncoprotein v-rel ER.

Advances in Avian Immunology Research (eds. Davison, TF., Bumstead, N., Kaiser, P.). :65-73
Batra, RK., Wang-Johanning, F., Wagner, E., Garver, RI., Curiel, DT. (1994)

Receptor-mediated gene delivery employing lectin-binding specificity.

Gene Ther. 1(4):255-60
Lengauer, C., Henn, T., Onyango, P., Francis, F., Lehrach, H., Weith, A. (1994)

Large-scale isolation of human 1p36-specific P1 clones and their use for fluorescence in situ hybridization.

Genet Anal Tech Appl. 11(5-6):140-7
Lengauer, C., Dunham, I., Featherstone, T., Cremer, T. (1994)

Generation of alphoid DNA probes for fluorescence in situ hybridization (FISH) using the polymerase chain reaction.

Methods Mol Biol. 33:51-61
Lengauer, C., Speicher, MR., Cremer, T. (1994)

FISH of Alu-PCR-amplified YAC clones and applications in tumor cytogenetics.

Methods Mol Biol. 33:85-94
Chen, J., Stewart, V., Spyrou, G., Hilberg, F., Wagner, EF., Alt, FW. (1994)

Generation of normal T and B lymphocytes by c-jun deficient embryonic stem cells.

Immunity. 1(1):65-72
Zatloukal, K., Schneeberger, A., Berger, M., Koszik, F., Schmidt, W., Wagner, E., Cotten, M., Buschle, M., Maass, G., Stingl, G. (1994)

Genetic modification of cells by receptor-mediated adenovirus-augmented gene delivery: a new approach for immunotherapy of cancer.

Verh Dtsch Ges Pathol. 78:171-6
Beug, H., Müllner, EW., Hayman, MJ. (1994)

Insights into erythroid differentiation obtained from studies on avian erythroblastosis virus.

Curr Opin Cell Biol. 6(6):816-24
Kiefer, F., Courtneidge, SA., Wagner, EF. (1994)

Oncogenic properties of the middle T antigens of polyomaviruses.

Adv Cancer Res. 64:125-57
Ohlsson, R., Barlow, D., Surani, A. (1994)

Impressions of imprints.

Trends Genet. 10(12):415-7
Labosky, PA., Barlow, DP., Hogan, BL. (1994)

Embryonic germ cell lines and their derivation from mouse primordial germ cells.

Ciba Found Symp. 182:157-68; discussion 168-78
Thurnher, M., Wagner, E., Clausen, H., Mechtler, K., Rusconi, S., Dinter, A., Birnstiel, ML., Berger, EG., Cotten, M. (1994)

Carbohydrate receptor-mediated gene transfer to human T leukaemic cells.

Glycobiology. 4(4):429-35
Urbánek, P., Wang, ZQ., Fetka, I., Wagner, EF., Busslinger, M. (1994)

Complete block of early B cell differentiation and altered patterning of the posterior midbrain in mice lacking Pax5/BSAP.

Cell. 79(5):901-12
Schäfer, BW., Czerny, T., Bernasconi, M., Genini, M., Busslinger, M. (1994)

Molecular cloning and characterization of a human PAX-7 cDNA expressed in normal and neoplastic myocytes.

Nucleic Acids Res. 22(22):4574-82
Wang, ZQ., Fung, MR., Barlow, DP., Wagner, EF. (1994)

Regulation of embryonic growth and lysosomal targeting by the imprinted Igf2/Mpr gene.

Nature. 372(6505):464-7
Cotten, M., Saltik, M., Kursa, M., Wagner, E., Maass, G., Birnstiel, ML. (1994)

Psoralen treatment of adenovirus particles eliminates virus replication and transcription while maintaining the endosomolytic activity of the virus capsid.

Virology. 205(1):254-61
Magyar, JP., Bartsch, U., Wang, ZQ., Howells, N., Aguzzi, A., Wagner, EF., Schachner, M. (1994)

Degeneration of neural cells in the central nervous system of mice deficient in the gene for the adhesion molecule on Glia, the beta 2 subunit of murine Na,K-ATPase.

J Cell Biol. 127(3):835-45
Kiefer, F., Anhauser, I., Soriano, P., Aguzzi, A., Courtneidge, SA., Wagner, EF. (1994)

Endothelial cell transformation by polyomavirus middle T antigen in mice lacking Src-related kinases.

Curr Biol. 4(2):100-9
Schwob, E., Böhm, T., Mendenhall, MD., Nasmyth, K. (1994)

The B-type cyclin kinase inhibitor p40SIC1 controls the G1 to S transition in S. cerevisiae.

Cell. 79(2):233-44
Frank, S., Krasznai, K., Durovic, S., Lobentanz, EM., Dieplinger, H., Wagner, E., Zatloukal, K., Cotten, M., Utermann, G., Kostner, GM. (1994)

High-level expression of various apolipoprotein(a) isoforms by "transferrinfection": the role of kringle IV sequences in the extracellular association with low-density lipoprotein.

Biochemistry. 33(40):12329-39
Grigoriadis, AE., Wang, ZQ., Cecchini, MG., Hofstetter, W., Felix, R., Fleisch, HA., Wagner, EF. (1994)

c-Fos: a key regulator of osteoclast-macrophage lineage determination and bone remodeling.

Science. 266(5184):443-8
Koch, C., Nasmyth, K. (1994)

Cell cycle regulated transcription in yeast.

Curr Opin Cell Biol. 6(3):451-9
Kenner, L., el-Shabrawi, Y., Hutter, H., Forstner, M., Zatloukal, K., Hoefler, G., Preisegger, KH., Kurzbauer, R., Denk, H. (1994)

Expression of three- and four-repeat tau isoforms in mouse liver.

Hepatology. 20(4 Pt 1):1086-9
Vorechovský, I., Kurzbauer, R., Kozmík, Z., Hammarström, L., Smith, CI., Busslinger, M. (1994)

SSCP/SacI polymorphism in the PAX5 gene.

Hum Mol Genet. 3(5):839
Barlow, DP. (1994)

Imprinting: a gamete's point of view.

Trends Genet. 10(6):194-9
Vorechovský, I., Kozmík, Z., Hammarström, L., Smith, CI., Busslinger, M. (1994)

An intragenic TaqI RFLP at the PAX5 locus.

Hum Mol Genet. 3(4):681
Wagner, EF., Risau, W. (1994)

Oncogenes in the study of endothelial cell growth and differentiation.

Semin Cancer Biol. 5(2):137-45
Reichmann, E. (1994)

Oncogenes and epithelial cell transformation.

Semin Cancer Biol. 5(2):157-65
Enrietto, PJ., Beug, H. (1994)

Introduction: oncogenes and differentiation.

Semin Cancer Biol. 5(2):91-4
Dracopoli, NC., Bruns, GA., Brodeur, GM., Landes, GM., Matise, TC., Seldin, MF., Vance, JM., Weith, A. (1994)

Report and abstracts of the First International Workshop on Human Chromosome 1 Mapping 1994. Bethesda, Maryland, March 25-27, 1994.

Cytogenet Cell Genet. 67(3):144-65
Huber, LA., Beug, H., Simons, K., Reichmann, E. (1994)

Two-dimensional gel mapping of small GTPases reveals transformation-specific changes during oncogenesis.

Electrophoresis. 15(3-4):469-73
Bauer, A., Beyer, A. (1994)

An improved pair potential to recognize native protein folds.

Proteins. 18(3):254-61
Zatloukal, K., Cotten, M., Berger, M., Schmidt, W., Wagner, E., Birnstiel, ML. (1994)

In vivo production of human factor VII in mice after intrasplenic implantation of primary fibroblasts transfected by receptor-mediated, adenovirus-augmented gene delivery.

Proc Natl Acad Sci U S A. 91(11):5148-52
Epstein, DJ., Bardeesy, N., Vidal, S., Malo, D., Weith, A., Vekemans, M., Gros, P. (1994)

Characterization of a region-specific library of microclones in the vicinity of the Bcg and splotch loci on mouse chromosome 1.

Genomics. 19(1):163-6
Gruber, J., Sgonc, R., Hu, YH., Beug, H., Wick, G. (1994)

Thymocyte apoptosis induced by elevated endogenous corticosterone levels.

Eur J Immunol. 24(5):1115-21
Boehmelt, G., Ulrich, E., Kurzbauer, R., Mellitzer, G., Bird, A., Zenke, M. (1994)

Structure and expression of the chicken retinoblastoma gene.

Cell Growth Differ. 5(2):221-30
Cheng, Q., Cant, CA., Moll, T., Hofer-Warbinek, R., Wagner, E., Birnstiel, ML., Bach, FH., de Martin, R. (1994)

NK-kappa B subunit-specific regulation of the I kappa B alpha promoter.

J Biol Chem. 269(18):13551-7
Plank, C., Oberhauser, B., Mechtler, K., Koch, C., Wagner, E. (1994)

The influence of endosome-disruptive peptides on gene transfer using synthetic virus-like gene transfer systems.

J Biol Chem. 269(17):12918-24
Vennström, B., Raynoscheck, C., Jansson, L., Doederlein, G., Lhotak, V., Johnsson, A., Beug, H. (1994)

Retroviral capture of c-erbB proto-oncogene sequences: rapid evolution of distinct viral genomes carrying mutant v-erbB genes with different transforming capacities.

Oncogene. 9(5):1307-20
Liao, F., Birshtein, BK., Busslinger, M., Rothman, P. (1994)

The transcription factor BSAP (NF-HB) is essential for immunoglobulin germ-line epsilon transcription.

J Immunol. 152(6):2904-11
Kubicka, P., Kramaric, G. (1994)

Electroporation of cosmid DNA into bacterial cells.

Trends Genet. 10(1):5
Gottlieb, E., Haffner, R., von Rüden, T., Wagner, EF., Oren, M. (1994)

Down-regulation of wild-type p53 activity interferes with apoptosis of IL-3-dependent hematopoietic cells following IL-3 withdrawal.

EMBO J. 13(6):1368-74
Curiel, TJ., Cook, DR., Bogedain, C., Jilg, W., Harrison, GS., Cotten, M., Curiel, DT., Wagner, E. (1994)

Efficient foreign gene expression in Epstein-Barr virus-transformed human B-cells.

Virology. 198(2):577-85
Okada, S., Wang, ZQ., Grigoriadis, AE., Wagner, EF., von Rüden, T. (1994)

Mice lacking c-fos have normal hematopoietic stem cells but exhibit altered B-cell differentiation due to an impaired bone marrow environment.

Mol Cell Biol. 14(1):382-90
Busslinger, M., Bergers, G. (1994)

Identification of AP-1-regulated genes.

The Fos and Jun families of transcription factors (eds. Angel, PE., Herrlich, PA.). :133-50
Nasmyth, KA. (1994)

An Egg-ocentric view of the cell cycle.

Cell. 78:11-13
Maass, G., Zatloukal, K., Schmidt, W., Berger, M., Cotten, M., Buschle, M., Wagner, E., Birnstiel, ML. (1994)

Generation of tumor vaccines by adenovirus-enhanced transfection of cytokine genes into tumor cells.

NATO ASI Series. H88:467-79
Wagner, E., Curiel, D., Cotten, M. (1994)

Delivery of drugs, proteins and genes into cells using transferrin as a ligand for receptor-mediated endocytosis.

Advanced Drug Delivery Reviews. 14:113-36
Weith, A. (1994)

The analysis of disease-specific chromosomal rearrangements with microcloned DNA markers.

Methods in Molecular Genetics (ed. Adolph, K.). 5: Gene and Chromosome Analysis, Part C:169-94
Wagner, EF. (1994)

Embryonic stem cell as a tool for analyzing mammalian hematopoietic development and disease.

Schering Res. Foundation Workshop. 11:58-67
Stapleton, P., Weith, A., Urbánek, P., Kozmik, Z., Busslinger, M. (1993)

Chromosomal localization of seven PAX genes and cloning of a novel family member, PAX-9.

Nat Genet. 3(4):292-8
Cotten, M., Wagner, E. (1993)

Non-viral approaches to gene therapy.

Curr Opin Biotechnol. 4(6):705-10
Zatloukal, K., Schmidt, W., Cotten, M., Wagner, E., Stingl, G., Birnstiel, ML. (1993)

Somatic gene therapy for cancer: the utility of transferrinfection in generating 'tumor vaccines'.

Gene. 135(1-2):199-207
Himmelbauer, H., Artzt, K., Barlow, D., Fischer-Lindahl, K., Lyon, M., Klein, J., Silver, LM. (1993)

Encyclopedia of the mouse genome III. October 1993. Mouse chromosome 17.

Mamm Genome. 4 Spec No:S230-52
Cvrcková, F., Nasmyth, K. (1993)

Yeast G1 cyclins CLN1 and CLN2 and a GAP-like protein have a role in bud formation.

EMBO J. 12(13):5277-86
Nasmyth, K., Hunt, T. (1993)

Cell cycle. Dams and sluices.

Nature. 366(6456):634-5
Larsen, J., Meyer, S., Steinlein, P., Beug, H., Hayman, MJ. (1993)

Transformation of chicken bone marrow cells by the v-ski oncogene.

Oncogene. 8(12):3221-8
Micklem, G., Rowley, A., Harwood, J., Nasmyth, K., Diffley, JF. (1993)

Yeast origin recognition complex is involved in DNA replication and transcriptional silencing.

Nature. 366(6450):87-9
Czerny, T., Schaffner, G., Busslinger, M. (1993)

DNA sequence recognition by Pax proteins: bipartite structure of the paired domain and its binding site.

Genes Dev. 7(10):2048-61
Kozmik, Z., Kurzbauer, R., Dörfler, P., Busslinger, M. (1993)

Alternative splicing of Pax-8 gene transcripts is developmentally regulated and generates isoforms with different transactivation properties.

Mol Cell Biol. 13(10):6024-35
Koch, C., Moll, T., Neuberg, M., Ahorn, H., Nasmyth, K. (1993)

A role for the transcription factors Mbp1 and Swi4 in progression from G1 to S phase.

Science. 261(5128):1551-7
Moll, T., Schwob, E., Koch, C., Moore, A., Auer, H., Nasmyth, K. (1993)

Transcription factors important for starting the cell cycle in yeast.

Philos Trans R Soc Lond B Biol Sci. 340(1293):351-60
Hilberg, F., Aguzzi, A., Howells, N., Wagner, EF. (1993)

c-jun is essential for normal mouse development and hepatogenesis.

Nature. 365(6442):179-81
Thomas, JE., Aguzzi, A., Soriano, P., Wagner, EF., Brugge, JS. (1993)

Induction of tumor formation and cell transformation by polyoma middle T antigen in the absence of Src.

Oncogene. 8(9):2521-9
Pavlik, P., Simon, M., Schuster, T., Ruis, H. (1993)

The glycerol kinase (GUT1) gene of Saccharomyces cerevisiae: cloning and characterization.

Curr Genet. 24(1-2):21-5
Gautel, M., Lakey, A., Barlow, DP., Holmes, Z., Scales, S., Leonard, K., Labeit, S., Mygland, A., Gilhus, NE., Aarli, JA. (1993)

Titin antibodies in myasthenia gravis: identification of a major immunogenic region of titin.

Neurology. 43(8):1581-5
Wang, ZQ., Grigoriadis, AE., Wagner, EF. (1993)

Stable murine chondrogenic cell lines derived from c-fos-induced cartilage tumors.

J Bone Miner Res. 8(7):839-47
Grigoriadis, AE., Schellander, K., Wang, ZQ., Wagner, EF. (1993)

Osteoblasts are target cells for transformation in c-fos transgenic mice.

J Cell Biol. 122(3):685-701
Lakey, A., Labeit, S., Gautel, M., Ferguson, C., Barlow, DP., Leonard, K., Bullard, B. (1993)

Kettin, a large modular protein in the Z-disc of insect muscles.

EMBO J. 12(7):2863-71
Breitwieser, W., Price, C., Schuster, T. (1993)

Identification of a gene encoding a novel zinc finger protein in Saccharomyces cerevisiae.

Yeast. 9(5):551-6
Netzer, KO., Schliephake, A., Maurer, B., Watanabe, R., Aguzzi, A., Rethwilm, A. (1993)

Identification of pol-related gene products of human foamy virus.

Virology. 192(1):336-8
Nasmyth, K. (1993)

Control of the yeast cell cycle by the Cdc28 protein kinase.

Curr Opin Cell Biol. 5(2):166-79
Nasmyth, K. (1993)

Regulating the HO endonuclease in yeast.

Curr Opin Genet Dev. 3(2):286-94
Briegel, K., Lim, KC., Plank, C., Beug, H., Engel, JD., Zenke, M. (1993)

Ectopic expression of a conditional GATA-2/estrogen receptor chimera arrests erythroid differentiation in a hormone-dependent manner.

Genes Dev. 7(6):1097-109
Saatcioglu, F., Bartunek, P., Deng, T., Zenke, M., Karin, M. (1993)

A conserved C-terminal sequence that is deleted in v-ErbA is essential for the biological activities of c-ErbA (the thyroid hormone receptor).

Mol Cell Biol. 13(6):3675-85
Surana, U., Amon, A., Dowzer, C., McGrew, J., Byers, B., Nasmyth, K. (1993)

Destruction of the CDC28/CLB mitotic kinase is not required for the metaphase to anaphase transition in budding yeast.

EMBO J. 12(5):1969-78
Cotten, M., Wagner, E., Birnstiel, ML. (1993)

Receptor-mediated transport of DNA into eukaryotic cells.

Methods Enzymol. 217:618-44
Aguzzi, A., Wagner, EF., Netzer, KO., Bothe, K., Anhauser, I., Rethwilm, A. (1993)

Human foamy virus proteins accumulate in neurons and induce multinucleated giant cells in the brain of transgenic mice.

Am J Pathol. 142(4):1061-71
Muñoz, A., Wrighton, C., Seliger, B., Bernal, J., Beug, H. (1993)

Thyroid hormone receptor/c-erbA: control of commitment and differentiation in the neuronal/chromaffin progenitor line PC12.

J Cell Biol. 121(2):423-38
Barettino, D., Bugge, TH., Bartunek, P., Vivanco Ruiz, MD., Sonntag-Buck, V., Beug, H., Zenke, M., Stunnenberg, HG. (1993)

Unliganded T3R, but not its oncogenic variant, v-erbA, suppresses RAR-dependent transactivation by titrating out RXR.

EMBO J. 12(4):1343-54
Barlow, DP. (1993)

Methylation and imprinting: from host defense to gene regulation?

Science. 260(5106):309-10
Gao, L., Wagner, E., Cotten, M., Agarwal, S., Harris, C., Rømer, M., Miller, L., Hu, PC., Curiel, D. (1993)

Direct in vivo gene transfer to airway epithelium employing adenovirus-polylysine-DNA complexes.

Hum Gene Ther. 4(1):17-24
Michael, SI., Huang, CH., Rømer, MU., Wagner, E., Hu, PC., Curiel, DT. (1993)

Binding-incompetent adenovirus facilitates molecular conjugate-mediated gene transfer by the receptor-mediated endocytosis pathway.

J Biol Chem. 268(10):6866-9
Stöger, R., Kubicka, P., Liu, CG., Kafri, T., Razin, A., Cedar, H., Barlow, DP. (1993)

Maternal-specific methylation of the imprinted mouse Igf2r locus identifies the expressed locus as carrying the imprinting signal.

Cell. 73(1):61-71
Errede, B., Gartner, A., Zhou, Z., Nasmyth, K., Ammerer, G. (1993)

MAP kinase-related FUS3 from S. cerevisiae is activated by STE7 in vitro.

Nature. 362(6417):261-4
Tebb, G., Moll, T., Dowzer, C., Nasmyth, K. (1993)

SWI5 instability may be necessary but is not sufficient for asymmetric HO expression in yeast.

Genes Dev. 7(3):517-28
Braselmann, S., Graninger, P., Busslinger, M. (1993)

A selective transcriptional induction system for mammalian cells based on Gal4-estrogen receptor fusion proteins.

Proc Natl Acad Sci U S A. 90(5):1657-61
Grigoriadis, AE., Wang, ZQ., Wagner, EF. (1993)

c-Fos oncogene expression in cartilage and bone tissues of transgenic and chimaeric mice.

Cell. and Mol. of the Bone (ed. Noda, M.). :497-537
Zenke, M. (1993)

v-erbA.

Guidebook to Oncogenes (eds. Marshall, C., Müller, R., Ozanne, B.).
Weith, A., Kleiner, E., Ellmeier, W., Stapleton, P., Barnas, C. (1993)

Towards physical linkage map of the human chromosome 1p36 region.

Human Neuroblastoma (ed. Schwab, M.). :251-61
Sokanathan, S., Moll, T., Siegmund, R., Dirick, L., Koch, C., Beug, H. (1993)

Switching genes on at the START of the yeast cell cycle.

The pharmacology of cell differentiation. Esteve Foundation Symposium Volume (ed. Rifkind, RA.). :107-21
Weith, A. (1993)

Tumour preventing genes in neuroblastoma.

Eur. J. Canc.. 29A S6:S38
Wagner, EF, Aguzzi, A. (1993)

Exploring the pathogenic potential of polyoma middle T, c-fos and human foamy virus in transgenic mice.

Transgenic animals as models for human diseases (eds. Theuring, F., Wagner, EF.). 6:109-28
Nasmyth, K. (1992)

How do cells control the timing of DNA replication and mitosis?

Harvey Lect. 88:141-71
Aguzzi, A., Ellmeier, W., Weith, A. (1992)

Dominant and recessive molecular changes in neuroblastomas.

Brain Pathol. 2(3):195-208
Wiestler, OD., Brüstle, O., Eibl, RH., Radner, H., Aguzzi, A., Kleihues, P. (1992)

Retrovirus-mediated oncogene transfer into neural transplants.

Brain Pathol. 2(1):47-59
Aguzzi, A., Bothe, K., Wagner, EF., Rethwilm, A., Horak, I. (1992)

Human foamy virus: an underestimated neuropathogen?

Brain Pathol. 2(1):61-9
Zatloukal, K., Wagner, E., Cotten, M., Phillips, S., Plank, C., Steinlein, P., Curiel, DT., Birnstiel, ML. (1992)

Transferrinfection: a highly efficient way to express gene constructs in eukaryotic cells.

Ann N Y Acad Sci. 660:136-53
Engel, JD., Beug, H., LaVail, JH., Zenke, MW., Mayo, K., Leonard, MW., Foley, KP., Yang, Z., Kornhauser, JM., Ko, LJ. (1992)

cis and trans regulation of tissue-specific transcription.

J Cell Sci Suppl. 16:21-31
Moll, T., Dirick, L., Auer, H., Bonkovsky, J., Nasmyth, K. (1992)

SWI6 is a regulatory subunit of two different cell cycle START-dependent transcription factors in Saccharomyces cerevisiae.

J Cell Sci Suppl. 16:87-96
Braselmann, S., Bergers, G., Wrighton, C., Graninger, P., Superti-Furga, G., Busslinger, M. (1992)

Identification of Fos target genes by the use of selective induction systems.

J Cell Sci Suppl. 16:97-109
Reichmann, E., Schwarz, H., Deiner, EM., Leitner, I., Eilers, M., Berger, J., Busslinger, M., Beug, H. (1992)

Activation of an inducible c-FosER fusion protein causes loss of epithelial polarity and triggers epithelial-fibroblastoid cell conversion.

Cell. 71(7):1103-16
Wang, ZQ., Ovitt, C., Grigoriadis, AE., Möhle-Steinlein, U., Rüther, U., Wagner, EF. (1992)

Bone and haematopoietic defects in mice lacking c-fos.

Nature. 360(6406):741-5
Vidal, SM., Epstein, DJ., Malo, D., Weith, A., Vekemans, M., Gros, P. (1992)

Identification and mapping of six microdissected genomic DNA probes to the proximal region of mouse chromosome 1.

Genomics. 14(1):32-7
Boehmelt, G., Walker, A., Kabrun, N., Mellitzer, G., Beug, H., Zenke, M., Enrietto, PJ. (1992)

Hormone-regulated v-rel estrogen receptor fusion protein: reversible induction of cell transformation and cellular gene expression.

EMBO J. 11(12):4641-52
Curiel, DT., Wagner, E., Cotten, M., Birnstiel, ML., Agarwal, S., Li, CM., Loechel, S., Hu, PC. (1992)

High-efficiency gene transfer mediated by adenovirus coupled to DNA-polylysine complexes.

Hum Gene Ther. 3(2):147-54
Juillerat-Jeanneret, L., Aguzzi, A., Wiestler, OD., Darekar, P., Janzer, RC. (1992)

Dexamethasone selectively regulates the activity of enzymatic markers of cerebral endothelial cell lines.

In Vitro Cell Dev Biol. 28A(7-8):537-43
Phillips, S., Cotten, M., Laengle-Rouault, F., Schaffner, G., Birnstiel, ML. (1992)

Amphibian oocytes and sphere organelles: are the U snRNA genes amplified?

Chromosoma. 101(9):549-56
Fitch, I., Dahmann, C., Surana, U., Amon, A., Nasmyth, K., Goetsch, L., Byers, B., Futcher, B. (1992)

Characterization of four B-type cyclin genes of the budding yeast Saccharomyces cerevisiae.

Mol Biol Cell. 3(7):805-18
Adams, B., Dörfler, P., Aguzzi, A., Kozmik, Z., Urbánek, P., Maurer-Fogy, I., Busslinger, M. (1992)

Pax-5 encodes the transcription factor BSAP and is expressed in B lymphocytes, the developing CNS, and adult testis.

Genes Dev. 6(9):1589-607
Fuerstenberg, S., Leitner, I., Schroeder, C., Schwarz, H., Vennström, B., Beug, H. (1992)

Transcriptional repression of band 3 and CAII in v-erbA transformed erythroblasts accounts for an important part of the leukaemic phenotype.

EMBO J. 11(9):3355-65
Primig, M., Sockanathan, S., Auer, H., Nasmyth, K. (1992)

Anatomy of a transcription factor important for the start of the cell cycle in Saccharomyces cerevisiae.

Nature. 358(6387):593-7
Silver, LM., Artzt, K., Barlow, D., Fischer-Lindahl, K., Lyon, MF., Klein, J., Snyder, L. (1992)

Mouse chromosome 17.

Mamm Genome. 3 Spec No:S241-60
Treisman, R., Ammerer, G. (1992)

The SRF and MCM1 transcription factors.

Curr Opin Genet Dev. 2(2):221-6
Boulter, CA., Aguzzi, A., Evans, MJ., Affara, N. (1992)

A chimaeric mouse model for autosomal-dominant polycystic kidney disease.

Contrib Nephrol. 97:60-70
Ellmeier, W., Aguzzi, A., Kleiner, E., Kurzbauer, R., Weith, A. (1992)

Mutually exclusive expression of a helix-loop-helix gene and N-myc in human neuroblastomas and in normal development.

EMBO J. 11(7):2563-71
Cotten, M., Wagner, E., Zatloukal, K., Phillips, S., Curiel, DT., Birnstiel, ML. (1992)

High-efficiency receptor-mediated delivery of small and large (48 kilobase gene constructs using the endosome-disruption activity of defective or chemically inactivated adenovirus particles.

Proc Natl Acad Sci U S A. 89(13):6094-8
Wagner, E., Zatloukal, K., Cotten, M., Kirlappos, H., Mechtler, K., Curiel, DT., Birnstiel, ML. (1992)

Coupling of adenovirus to transferrin-polylysine/DNA complexes greatly enhances receptor-mediated gene delivery and expression of transfected genes.

Proc Natl Acad Sci U S A. 89(13):6099-103
Wiestler, OD., Aguzzi, A., Schneemann, M., Eibl, R., von Deimling, A., Kleihues, P. (1992)

Oncogene complementation in fetal brain transplants.

Cancer Res. 52(13):3760-7
Larson, DE., Hoffmann, I., Zahradka, P., Birnstiel, ML., Sells, BH. (1992)

Histone H4 mRNA levels are down-regulated by 3' RNA processing during terminal differentiation of myoblasts.

Biochim Biophys Acta. 1131(2):139-44
Dirick, L., Moll, T., Auer, H., Nasmyth, K. (1992)

A central role for SWI6 in modulating cell cycle Start-specific transcription in yeast.

Nature. 357(6378):508-13
von Rüden, T., Kandels, S., Radaszkiewicz, T., Ullrich, A., Wagner, EF. (1992)

Development of a lethal mast cell disease in mice reconstituted with bone marrow cells expressing the v-erbB oncogene.

Blood. 79(12):3145-58
Brüstle, O., Aguzzi, A., Talarico, D., Basilico, C., Kleihues, P., Wiestler, OD. (1992)

Angiogenic activity of the K-fgf/hst oncogene in neural transplants.

Oncogene. 7(6):1177-83
Kozmik, Z., Wang, S., Dörfler, P., Adams, B., Busslinger, M. (1992)

The promoter of the CD19 gene is a target for the B-cell-specific transcription factor BSAP.

Mol Cell Biol. 12(6):2662-72
Aguzzi, A., Bothe, K., Anhauser, I., Horak, I., Rethwilm, A., Wagner, EF. (1992)

Expression of human foamy virus is differentially regulated during development in transgenic mice.

New Biol. 4(3):225-37
Phillips, SC., Birnstiel, ML. (1992)

Analysis of a gene cluster coding for the Xenopus laevis U7 snRNA.

Biochim Biophys Acta. 1131(1):95-8
Curiel, DT., Agarwal, S., Rømer, MU., Wagner, E., Cotten, M., Birnstiel, ML., Boucher, RC. (1992)

Gene transfer to respiratory epithelial cells via the receptor-mediated endocytosis pathway.

Am J Respir Cell Mol Biol. 6(3):247-52
Patel, G., Nasmyth, K., Jones, N. (1992)

A new method for the isolation of recombinant baculovirus.

Nucleic Acids Res. 20(1):97-104
Redemann, N., Holzmann, B., von Rüden, T., Wagner, EF., Schlessinger, J., Ullrich, A. (1992)

Anti-oncogenic activity of signalling-defective epidermal growth factor receptor mutants.

Mol Cell Biol. 12(2):491-8
Amon, A., Surana, U., Muroff, I., Nasmyth, K. (1992)

Regulation of p34CDC28 tyrosine phosphorylation is not required for entry into mitosis in S. cerevisiae.

Nature. 355(6358):368-71
Quarto, R., Dozin, B., Tacchetti, C., Robino, G., Zenke, M., Campanile, G., Cancedda, R. (1992)

Constitutive myc expression impairs hypertrophy and calcification in cartilage.

Dev Biol. 149(1):168-76
Silver LM., Artzt K., Barlow D., Fischer-Lindahl K., Lyon MF., Klein J., Snyder L. (1992)

Mouse Chromosome 17

Mammalian Genome. 3(1 Supplement):S241-S260
Beyer, A., Kalchhauser, H., Wolschann, P. (1992)

Molecular modeling on garuganin-I.

Monatshefte für Chemie. 123:417-23
Beug, H., Doederlein, G., Zenke, M. (1992)

Independent modulation of differentiation and proliferation in erythroid progenitors.

Nuclear Processes and Oncogenes. :53-84
Barlow, DP. (1992)

Preparation, restriction and hybridization analysis of mammalian genomic DNA for pulsed-field gel electrophoresis.

Methods, Applications and Theories in Pulsed-Field gel Electrophoresis (eds. Burmeister, M., Ulanovsky, L.). :107-28
Wagner, EF. (1992)

Towards a molecular understanding of mammalian development and disease?

Proc. of the 10th Discoveries Symposium "Basic Life Sciences and Human Society", Alexander von Humboldt Foundation. :63-71
Zimmer, A., Wang, ZQ., Wagner, EF., Gruss, P. (1992)

Homologous recombination in embryonic stem cells as a means to generate mice with defined mutations.

Mechanisms of Eukaryotic DNA Recombination (eds. Gottesman, ME., Vogel, HZ.). :29-40
Nasmyth, K., Dirick, L., Surana, U., Amon, A., Cvrckova, F. (1991)

Some facts and thoughts on cell cycle control in yeast.

Cold Spring Harb Symp Quant Biol. 56:9-20
Artzt, K., Barlow, D., Dove, WF., Fischer-Lindahl, K., Klein, J., Lyon, MF., Silver, LM. (1991)

Mouse chromosome 17.

Mamm Genome. 1 Spec No:S280-300
Lydall, D., Ammerer, G., Nasmyth, K. (1991)

A new role for MCM1 in yeast: cell cycle regulation of SW15 transcription.

Genes Dev. 5(12B):2405-19
Burkert, U., von Rüden, T., Wagner, EF. (1991)

Early fetal hematopoietic development from in vitro differentiated embryonic stem cells.

New Biol. 3(7):698-708
Benn, A., Antoine, M., Beug, H., Niessing, J. (1991)

Primary structure and expression of a chicken cDNA encoding a protein with zinc-finger motifs.

Gene. 106(2):207-12
Alexander, WS., Lyman, SD., Wagner, EF. (1991)

Expression of functional c-kit receptors rescues the genetic defect of W mutant mast cells.

EMBO J. 10(12):3683-91
Wagner, E., Oberhauser, B., Holzner, A., Brunar, H., Issakides, G., Schaffner, G., Cotten, M., Knollmüller, M., Noe, CR. (1991)

A simple procedure for the preparation of protected 2'-O-methyl or 2'-O-ethyl ribonucleoside-3'-O-phosphoramidites.

Nucleic Acids Res. 19(21):5965-71
Disela, C., Glineur, C., Bugge, T., Sap, J., Stengl, G., Dodgson, J., Stunnenberg, H., Beug, H., Zenke, M. (1991)

v-erbA overexpression is required to extinguish c-erbA function in erythroid cell differentiation and regulation of the erbA target gene CAII.

Genes Dev. 5(11):2033-47
Taba, MR., Muroff, I., Lydall, D., Tebb, G., Nasmyth, K. (1991)

Changes in a SWI4,6-DNA-binding complex occur at the time of HO gene activation in yeast.

Genes Dev. 5(11):2000-13
Smith, HO., Tabiti, K., Schaffner, G., Soldati, D., Albrecht, U., Birnstiel, ML. (1991)

Two-step affinity purification of U7 small nuclear ribonucleoprotein particles using complementary biotinylated 2'-O-methyl oligoribonucleotides.

Proc Natl Acad Sci U S A. 88(21):9784-8
Eckner, R., Ellmeier, W., Birnstiel, ML. (1991)

Mature mRNA 3' end formation stimulates RNA export from the nucleus.

EMBO J. 10(11):3513-22
Tanaka, EM., Kirschner, MW. (1991)

Microtubule behavior in the growth cones of living neurons during axon elongation.

J Cell Biol. 115(2):345-63
Morrison, LE., Boehmelt, G., Beug, H., Enrietto, PJ. (1991)

Expression of v-rel in a replication competent virus: transformation and biochemical characterization.

Oncogene. 6(9):1657-66
Curiel, DT., Agarwal, S., Wagner, E., Cotten, M. (1991)

Adenovirus enhancement of transferrin-polylysine-mediated gene delivery.

Proc Natl Acad Sci U S A. 88(19):8850-4
Boulter, CA., Aguzzi, A., Williams, RL., Wagner, EF., Evans, MJ., Beddington, R. (1991)

Expression of v-src induces aberrant development and twinning in chimaeric mice.

Development. 111(2):357-66
Nasmyth, K., Dirick, L. (1991)

The role of SWI4 and SWI6 in the activity of G1 cyclins in yeast.

Cell. 66(5):995-1013
Wang, ZQ., Grigoriadis, AE., Möhle-Steinlein, U., Wagner, EF. (1991)

A novel target cell for c-fos-induced oncogenesis: development of chondrogenic tumours in embryonic stem cell chimeras.

EMBO J. 10(9):2437-50
Hiller, S., Breit, S., Wang, ZQ., Wagner, EF., Schwab, M. (1991)

Localization of regulatory elements controlling human MYCN expression.

Oncogene. 6(6):969-77
Dirick, L., Nasmyth, K. (1991)

Positive feedback in the activation of G1 cyclins in yeast.

Nature. 351(6329):754-7
Simon, D., Knowles, BB., Weith, A. (1991)

Abnormalities of chromosome 1 and loss of heterozygosity on 1p in primary hepatomas.

Oncogene. 6(5):765-70
Superti-Furga, G., Bergers, G., Picard, D., Busslinger, M. (1991)

Hormone-dependent transcriptional regulation and cellular transformation by Fos-steroid receptor fusion proteins.

Proc Natl Acad Sci U S A. 88(12):5114-8
Cotten, M., Oberhauser, B., Brunar, H., Holzner, A., Issakides, G., Noe, CR., Schaffner, G., Wagner, E., Birnstiel, ML. (1991)

2'-O-methyl, 2'-O-ethyl oligoribonucleotides and phosphorothioate oligodeoxyribonucleotides as inhibitors of the in vitro U7 snRNP-dependent mRNA processing event.

Nucleic Acids Res. 19(10):2629-35
Wagner, E., Cotten, M., Foisner, R., Birnstiel, ML. (1991)

Transferrin-polycation-DNA complexes: the effect of polycations on the structure of the complex and DNA delivery to cells.

Proc Natl Acad Sci U S A. 88(10):4255-9
Cross, S., Kovarik, P., Schmidtke, J., Bird, A. (1991)

Non-methylated islands in fish genomes are GC-poor.

Nucleic Acids Res. 19(7):1469-74
Surana, U., Robitsch, H., Price, C., Schuster, T., Fitch, I., Futcher, AB., Nasmyth, K. (1991)

The role of CDC28 and cyclins during mitosis in the budding yeast S. cerevisiae.

Cell. 65(1):145-61
Lengauer, C., Eckelt, A., Weith, A., Endlich, N., Ponelies, N., Lichter, P., Greulich, KO., Cremer, T. (1991)

Painting of defined chromosomal regions by in situ suppression hybridization of libraries from laser-microdissected chromosomes.

Cytogenet Cell Genet. 56(1):27-30
Nadeau, JH., Herrmann, B., Bucan, M., Burkart, D., Crosby, JL., Erhart, MA., Kosowsky, M., Kraus, JP., Michiels, F., Schnattinger, A. (1991)

Genetic maps of mouse chromosome 17 including 12 new anonymous DNA loci and 25 anchor loci.

Genomics. 9(1):78-89
Eckert, WA., Plass, C., Weith, A., Traut, W., Winking, H. (1991)

Transcripts from amplified sequences of an inherited homogeneously staining region in chromosome 1 of the house mouse (Mus musculus).

Mol Cell Biol. 11(4):2229-35
von Rüden, T., Mouchiroud, G., Bourette, RP., Ouazana, R., Blanchet, JP., Wagner, EF. (1991)

Expression of human CSF-1 receptor induces CSF-1-dependent proliferation in murine myeloid but not in T-lymphoid cells.

Leukemia. 5(1):3-7
Khazaie, K., Panayotou, G., Aguzzi, A., Samarut, J., Gazzolo, L., Jurdic, P. (1991)

EGF promotes in vivo tumorigenic growth of primary chicken embryo fibroblasts expressing v-myc and enhances in vitro transformation by the v-erbA oncogene.

Oncogene. 6(1):21-8
Aguzzi, A., Kleihues, P., Heckl, K., Wiestler, OD. (1991)

Cell type-specific tumor induction in neural transplants by retrovirus-mediated oncogene transfer.

Oncogene. 6(1):113-8
Barlow, DP., Stöger, R., Herrmann, BG., Saito, K., Schweifer, N. (1991)

The mouse insulin-like growth factor type-2 receptor is imprinted and closely linked to the Tme locus.

Nature. 349(6304):84-7
Beug, H., Vennström, B. (1991)

Avian erythroleukemia: Possible mechanisms involved in v-erbA oncogene function.

Nuclear Hormone Receptors (ed. Parker, MD.). :355-75
Disela, C., Walter, C., Dodgson, J., Stunnenberg, H., Beug, H., Zenke, M. (1991)

The v-erbA oncoprotein efficiently suppresses erythrocyte-specific CA II expression.

Proceedings on carbonic anhydrases (ed. Botrè, F., Gros, G., Storey, BT.. :139-43
Wagner EF. (1991)

Transgenic mouse models for bone and vascular diseases and gene transfer into hematopoietic cells.

Human Gene Transfer (eds. Cohen-Haguenauer, O., Boiron, M.). 219:227-34
Wagner, EF., Wang, ZQ., Grigoriadis, AE., Möhle-Steinlein, U., Aguzzi, A., Risau, W. (1991)

Analysis of oncogene function in ES cells and chimaeric mice.

Origins of Human Cancer (CSH Lab Press). :1030-6
Vennström, B., Beug, H., Damm, K., Engel, D., Gehring, U., Graf, T., Munoz, A., Sap, J., Zenke, M. (1991)

Biological effects of the v-erbA oncogene in transformation of avian erythroid cells.

Molecular Mechanisms in Cellular Growth and Differentiation (eds. Bellve, AR., Vogel, JH.). :137-47
Zenke, M., Khazaie, K., Beug, H. (1991)

V-myc-transformed macrophages expressing the normal human EGF receptor are induced to proliferate by EGF via a non-autocrine mechanism.

Molecular Biology of Haematopiesis (eds. Sachs, I., Abraham, NG., Weidemann, C., Konwalinka, G.. :453-67
Aguzzi, A., Wagner, EF., Williams, RL., Courtneidge, SA. (1990)

Sympathetic hyperplasia and neuroblastomas in transgenic mice expressing polyoma middle T antigen.

New Biol. 2(6):533-43
Birnstiel, ML. (1990)

Gene isolation is 25 years old this month.

Trends Genet. 6(12):380-1
Goralczyk, R., Closs, EI., Rüther, U., Wagner, EF., Strauss, PG., Erfle, V., Schmidt, J. (1990)

Characterization of fos-induced osteogenic tumours and tumour-derived murine cell lines.

Differentiation. 44(2):122-31
Nasmyth, KA. (1990)

FAR-reaching discoveries about the regulation of START.

Cell. 63(6):1117-20
Glineur, C., Zenke, M., Beug, H., Ghysdael, J. (1990)

Phosphorylation of the v-erbA protein is required for its function as an oncogene.

Genes Dev. 4(10):1663-76
Schroeder, C., Raynoschek, C., Fuhrmann, U., Damm, K., Vennström, B., Beug, H. (1990)

The v-erb A oncogene causes repression of erythrocyte-specific genes and an immature, aberrant differentiation phenotype in normal erythroid progenitors.

Oncogene. 5(10):1445-53
Yamamoto, M., Ko, LJ., Leonard, MW., Beug, H., Orkin, SH., Engel, JD. (1990)

Activity and tissue-specific expression of the transcription factor NF-E1 multigene family.

Genes Dev. 4(10):1650-62
Fuerstenberg, S., Beug, H., Introna, M., Khazaie, K., Muñoz, A., Ness, S., Nordström, K., Sap, J., Stanley, I., Zenke, M. (1990)

Ectopic expression of the erythrocyte band 3 anion exchange protein, using a new avian retrovirus vector.

J Virol. 64(12):5891-902
Cotten, M. (1990)

The in vivo application of ribozymes.

Trends Biotechnol. 8(7):174-8
Montesano, R., Pepper, MS., Möhle-Steinlein, U., Risau, W., Wagner, EF., Orci, L. (1990)

Increased proteolytic activity is responsible for the aberrant morphogenetic behavior of endothelial cells expressing the middle T oncogene.

Cell. 62(3):435-45
Barberis, A., Widenhorn, K., Vitelli, L., Busslinger, M. (1990)

A novel B-cell lineage-specific transcription factor present at early but not late stages of differentiation.

Genes Dev. 4(5):849-59
Vasserot, AP., Hoffmann, I., Tabiti, K., Birnstiel, ML. (1990)

3 processing of histone RNA precursors.

Mol Biol Rep. 14(2-3):211-2
Sved, J., Bird, A. (1990)

The expected equilibrium of the CpG dinucleotide in vertebrate genomes under a mutation model.

Proc Natl Acad Sci U S A. 87(12):4692-6
Zenke, M., Muñoz, A., Sap, J., Vennström, B., Beug, H. (1990)

v-erbA oncogene activation entails the loss of hormone-dependent regulator activity of c-erbA.

Cell. 61(6):1035-49
Cotten, M., Längle-Rouault, F., Kirlappos, H., Wagner, E., Mechtler, K., Zenke, M., Beug, H., Birnstiel, ML. (1990)

Transferrin-polycation-mediated introduction of DNA into human leukemic cells: stimulation by agents that affect the survival of transfected DNA or modulate transferrin receptor levels.

Proc Natl Acad Sci U S A. 87(11):4033-7
Zenke, M., Steinlein, P., Wagner, E., Cotten, M., Beug, H., Birnstiel, ML. (1990)

Receptor-mediated endocytosis of transferrin-polycation conjugates: an efficient way to introduce DNA into hematopoietic cells.

Proc Natl Acad Sci U S A. 87(10):3655-9
Hengerer, B., Lindholm, D., Heumann, R., Rüther, U., Wagner, EF., Thoenen, H. (1990)

Lesion-induced increase in nerve growth factor mRNA is mediated by c-fos.

Proc Natl Acad Sci U S A. 87(10):3899-903
Labeit, S., Barlow, DP., Gautel, M., Gibson, T., Holt, J., Hsieh, CL., Francke, U., Leonard, K., Wardale, J., Whiting, A. (1990)

A regular pattern of two types of 100-residue motif in the sequence of titin.

Nature. 345(6272):273-6
Wagner, E., Zenke, M., Cotten, M., Beug, H., Birnstiel, ML. (1990)

Transferrin-polycation conjugates as carriers for DNA uptake into cells.

Proc Natl Acad Sci U S A. 87(9):3410-4
Tazi, J., Bird, A. (1990)

Alternative chromatin structure at CpG islands.

Cell. 60(6):909-20
Forrest, D., Muñoz, A., Raynoschek, C., Vennström, B., Beug, H. (1990)

Requirement for the C-terminal domain of the v-erbA oncogene protein for biological function and transcriptional repression.

Oncogene. 5(3):309-16
Meehan, R., Antequera, F., Lewis, J., MacLeod, D., McKay, S., Kleiner, E., Bird, AP. (1990)

A nuclear protein that binds preferentially to methylated DNA in vitro may play a role in the inaccessibility of methylated CpGs in mammalian nuclei.

Philos Trans R Soc Lond B Biol Sci. 326(1235):199-205
Beyer, A., Schuster, P. (1990)

Internal dynamics of flexible molecules.

Cyclohexane, Monatshefte f. Chemie. 1212:2339/349
Wagner, EF. (1990)

Oncogenes and transgenic mice.

Growth factors, differentiaion factors and cytokines (ed. Habenicht, A.). :662-83
Beug, H., Graf, T. (1989)

Co-operation between viral oncogenes in avian erythroid and myeloid leukaemia.

Eur J Clin Invest. 19(6):491-502
Cotten, M., Birnstiel, ML. (1989)

Ribozyme mediated destruction of RNA in vivo.

EMBO J. 8(12):3861-6
Bird, AP. (1989)

Two classes of observed frequency for rare-cutter sites in CpG islands.

Nucleic Acids Res. 17(22):9485
Harashima, S., Miller, AM., Tanaka, K., Kusumoto, K., Tanaka, K., Mukai, Y., Nasmyth, K., Oshima, Y. (1989)

Mating-type control in Saccharomyces cerevisiae: isolation and characterization of mutants defective in repression by a1-alpha 2.

Mol Cell Biol. 9(10):4523-30
Wiestler, OD., Aguzzi, A., Williams, RL., Wagner, EF., Boulter, CA., Kleihues, P. (1989)

Tumour induction in fetal brain transplants exposed to the viral oncogenes polyoma middle T and v-src.

IARC Sci Publ. (96):267-74
Barberis, A., Superti-Furga, G., Busslinger, M. (1989)

The testis-specific octamer-binding protein of the sea urchin has a molecular weight of 85 kDa.

Nucleic Acids Res. 17(17):7114
Meehan, RR., Lewis, JD., McKay, S., Kleiner, EL., Bird, AP. (1989)

Identification of a mammalian protein that binds specifically to DNA containing methylated CpGs.

Cell. 58(3):499-507
Rüther, U., Komitowski, D., Schubert, FR., Wagner, EF. (1989)

c-fos expression induces bone tumors in transgenic mice.

Oncogene. 4(7):861-5
Barberis, A., Superti-Furga, G., Vitelli, L., Kemler, I., Busslinger, M. (1989)

Developmental and tissue-specific regulation of a novel transcription factor of the sea urchin.

Genes Dev. 3(5):663-75
Birnstiel, ML., Busslinger, M. (1989)

Further liaisons with sperm.

Science. 245(4915):243-4
Williams, RL., Risau, W., Zerwes, HG., Drexler, H., Aguzzi, A., Wagner, EF. (1989)

Endothelioma cells expressing the polyoma middle T oncogene induce hemangiomas by host cell recruitment.

Cell. 57(6):1053-63
Rüther, U., Wagner, EF. (1989)

The specific consequences of c-fos expression in transgenic mice.

Prog Nucleic Acid Res Mol Biol. 36:235-45
Birnstiel, ML., Busslinger, M. (1989)

Dangerous liaisons: spermatozoa as natural vectors for foreign DNA?

Cell. 57(5):701-2
Trotter, J., Boulter, CA., Sontheimer, H., Schachner, M., Wagner, EF. (1989)

Expression of v-src arrests murine glial cell differentiation.

Oncogene. 4(4):457-64
Superti-Furga, G., Barberis, A., Schreiber, E., Busslinger, M. (1989)

The protein CDP, but not CP1, footprints on the CCAAT region of the gamma-globin gene in unfractionated B-cell extracts.

Biochim Biophys Acta. 1007(2):237-42
Wagner, EF., Williams, RL., Rüther, U. (1989)

c-fos and polyoma middle T oncogene expression in transgenic mice and embroyonal stem cell chimaeras.

NATO ASI Series. H26, Cell to cell signals in mammalian development (ed. de Laat, SW.):301-10
Heckl, K., Wagner, EF. (1989)

In situ analysis of c-fos expression in transgenic mice.

Current Communications in Molecular Biology: Molecular Genetics of Early Drosophila and Mouse Development (ed. Capecchi, MR.). :117-29
Graf, T., Kahn, P., Leutz, A., Beug, H., Vennström, B. (1988)

Cooperativity of viral oncogenes in avian leukaemia.

IARC Sci Publ. (92):165-70
Frykberg, L., Metz, T., Brady, G., Introna, M., Beug, H., Vennström, B., Graf, T. (1988)

A point mutation in the DNA binding domain of the v-myb oncogene of E26 virus confers temperature sensitivity for transformation of myelomonocytic cells.

Oncogene Res. 3(4):313-22
Superti-Furga, G., Barberis, A., Schaffner, G., Busslinger, M. (1988)

The -117 mutation in Greek HPFH affects the binding of three nuclear factors to the CCAAT region of the gamma-globin gene.

EMBO J. 7(10):3099-107
Cotten, M., Gick, O., Vasserot, A., Schaffner, G., Birnstiel, ML. (1988)

Specific contacts between mammalian U7 snRNA and histone precursor RNA are indispensable for the in vitro 3' RNA processing reaction.

EMBO J. 7(3):801-8
Cosson, J., Kemler, I., Tanno, S., Busslinger, M. (1988)

Promoter of a somatic histone H2B gene of the sea urchin.

Nucleic Acids Res. 16(9):4175
Gilmartin, GM., Schaufele, F., Schaffner, G., Birnstiel, ML. (1988)

Functional analysis of the sea urchin U7 small nuclear RNA.

Mol Cell Biol. 8(3):1076-84